Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011065

Physical Location & Seq

Genomic Coordinates Forward (+)

23067448 .. 23068971

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGCAGGAAGGTAAATCCGACGAAAGTTCCATAAAAGGACATGTAATTAATGCTAAATCCCAAACAGTGTGGCTTTCTCCCCGTACAAAAGCGCCCCTCTCCTCATTTCTCACTCATCCCTTAAAACACTTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTTCACATCTTTCTCCTTCGATTTTCAGTTCATCAAATCTCTGAGAGTTATTTAACACAAGTTTGTTCGACTTCGAGAATGTGCGGTGGTGCTATAATCTCCGATTTTATCCCTCGCGACGGTCGCCGTCGTGTCACCGCTTCTGACATATGGCCGGACTCTCCCTTCGCTAAGTTCAATCCCGACACTTTCTTCGACTGCAATCCCACCCCAACTACTCACACCGACTCAAATCCGCGTAAAAAATCCAAGCCCATTTCAGGTAATGTGCAAGAAGAGAAGCCGGCTAAGAGGCAGAGGAAGAACCTGTACCGAGGCATCAGGCAGCGTCCGTGGGGAAAATGGGCCGCCGAGATTCGTGATCCTAGAAAAGGGGTTCGAGTTTGGCTTGGTACCTTCAACACCGCCGAAGAGGCGGCCCGAGCTTACGACAGGGAGGCTCGCAAAATCCGCGGCAATAAAGCCAAGGTCAATTTCCCAAACGAAGACGACGACCTTCCCGCCCAGACCTATCTGAGAAAACCAAATCCTCCTCTGTTTCAACCCAAAAGCTTTGAATTGGGATTTGAGTATGATCTGAACCAGTTTGCGGCATTTCCCTCCAATTCCAATTCAGATGGGTTTTACTCCATGGCCATTGCGAACACCGACCCAATTGTTATTTCCGGGGAAGAAAACTCTTGGTCTGGTTCAGATGGCGCTTTCTCCTCCAAGGGGTTGCTGGGTTGCAATCAGAACGGGATGGGCGGTTGTCACGGCGGAGCTGAGCTGACAGAAGTGGAGGAAACACAAGAAGGGGAATTGAGCTTGGAGGCGATTGCAAGAATGGAAGATGACGAAGTGCAGAAGCTTTCTGAGGAGCTAATGGCGTACGAGAACATGATGAAATTCTATCAGATTCCTTATCTGGACGGGCAGTCCATGGCGGCTCCCCAGAATCCTCCGCCTCAGGAAAGCACCGTCGGTGATGAGCTTTGGAGCTTCGATAACGACGAGGGCGTTCCTGCTTCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034059 GO:0036293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0070482 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

398

Amino Acids

44.28

Weight (kDa)

5.54

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	163 - 212	4.7e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47520
fragaria_vesca	FvH4_2g26080 FvH4_2g26080 FvH4_2g26080
malus_domestica	MD11G1306500.v1.1
prunus_persica	Prupe.8G264900_v2.0.a1
pyrus_communis	pycom03g23120 pycom11g26820
rosa_chinensis	RchiOBHm_Chr6g0294441
rosa_laevigata	RLG00000011869
rosa_multiflora	Rmu_co8464789.1_g000002 Rmu_ssc0000248.1_g000011 Rmu_ssc0000248.1_g000012
rosa_roxburghii	Rroxscaffold_7G00173330
rosa_rugosa	Rorug06G0244700
rosa_samantha	Rh6AG357200 Rh6BG364100 Rh6CG371200 Rh6DG358000
rosa_wichuraiana	Rw6G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	569
AccB1I	GGYRCC	1 cut(s)	569
AccII	CGCG	3 cut(s)	294, 415, 630
AclWI	GGATC	1 cut(s)	533
AcoI	YGGCCR	2 cut(s)	329, 810
AcsI	RAATTY	1 cut(s)	1064
AfaI	GTAC	4 cut(s)	85, 488, 571, 1049
AfiI	CCNNNNNNNGG	5 cut(s)	296, 437, 548, 766, 891
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	4 cut(s)	355, 577, 719, 734
AhdI	GACNNNNNGTC	1 cut(s)	1093
AjuI	GAANNNNNNNTTGG	4 cut(s)	635, 667, 823, 855
AluBI	AGCT	9 cut(s)	602, 729, 941, 946, 984, 1027, 1039, 1150, 1158
AluI	AGCT	9 cut(s)	602, 729, 941, 946, 984, 1027, 1039, 1150, 1158
AlwI	GGATC	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	597
AoxI	GGCC	4 cut(s)	329, 522, 594, 810
ApeKI	GCWGC	1 cut(s)	502
ApoI	RAATTY	1 cut(s)	1064
ArsI	GACNNNNNNTTYG	4 cut(s)	326, 353, 358, 385
AseI	ATTAAT	1 cut(s)	48
Asp718I	GGTACC	1 cut(s)	569
AspLEI	GCGC	2 cut(s)	94, 878
AspS9I	GGNCC	2 cut(s)	522, 595
AsuC2I	CCSGG	1 cut(s)	844
AsuHPI	GGTGA	2 cut(s)	304, 1154
AvaI	CYCGRG	1 cut(s)	597
AxyI	CCTNAGG	1 cut(s)	1125
BalI	TGGCCA	1 cut(s)	812
BanI	GGYRCC	1 cut(s)	569
BarI	GAAGNNNNNNTAC	2 cut(s)	470, 502
BbsI	GAAGAC	1 cut(s)	669
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	3 cut(s)	788, 866, 913
BceAI	ACGGC	2 cut(s)	288, 949
BcnI	CCSGG	1 cut(s)	844
BfaI	CTAG	1 cut(s)	543
BfoI	RGCGCY	2 cut(s)	95, 879
BglI	GCCNNNNNGGC	1 cut(s)	590
BisI	GCNGC	6 cut(s)	503, 525, 594, 631, 768, 1104
BlpI	GCTNAGC	1 cut(s)	942
BlsI	GCNGC	6 cut(s)	504, 526, 595, 632, 769, 1105
Bme1390I	CCNGG	1 cut(s)	844
BmeRI	GACNNNNNGTC	1 cut(s)	1093
BmeT110I	CYCGRG	1 cut(s)	597
BmgT120I	GGNCC	2 cut(s)	522, 595
BmiI	GGNNCC	2 cut(s)	571, 1107
BmrFI	CCNGG	1 cut(s)	844
BmsI	GCATC	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	669
Bpu1102I	GCTNAGC	1 cut(s)	942
BpuMI	CCSGG	1 cut(s)	844
BsaJI	CCNNGG	8 cut(s)	490, 509, 628, 642, 807, 843, 888, 1098
Bsc4I	CCNNNNNNNGG	5 cut(s)	296, 437, 548, 766, 891
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	1 cut(s)	760
Bse21I	CCTNAGG	1 cut(s)	1125
Bse3DI	GCAATG	1 cut(s)	813
BseDI	CCNNGG	8 cut(s)	490, 509, 628, 642, 807, 843, 888, 1098
BseGI	GGATG	2 cut(s)	115, 924
BseLI	CCNNNNNNNGG	5 cut(s)	296, 437, 548, 766, 891
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	5 cut(s)	210, 683, 933, 1023, 1139
BseNI	ACTGG	1 cut(s)	760
BseRI	GAGGAG	6 cut(s)	91, 126, 161, 699, 874, 1049
BseXI	GCAGC	1 cut(s)	514
BseYI	CCCAGC	1 cut(s)	898
BsgI	GTGCAG	1 cut(s)	1040
Bsh1236I	CGCG	3 cut(s)	294, 415, 630
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	4 cut(s)	331, 524, 596, 812
BshNI	GGYRCC	1 cut(s)	569
BsiEI	CGRYCG	1 cut(s)	301
BsiHKCI	CYCGRG	1 cut(s)	597
BsiSI	CCGG	3 cut(s)	332, 461, 843
BsiWI	CGTACG	1 cut(s)	1047
BslI	CCNNNNNNNGG	5 cut(s)	296, 437, 548, 766, 891
BsnI	GGCC	4 cut(s)	331, 524, 596, 812
BsoBI	CYCGRG	1 cut(s)	597
Bsp143I	GATC	2 cut(s)	538, 751
Bsp1720I	GCTNAGC	1 cut(s)	942
Bsp19I	CCATGG	2 cut(s)	807, 1098
Bsp68I	TCGCGA	1 cut(s)	294
BspANI	GGCC	4 cut(s)	331, 524, 596, 812
BspCNI	CTCAG	5 cut(s)	211, 684, 934, 1024, 1138
BspFNI	CGCG	3 cut(s)	294, 415, 630
BspLI	GGNNCC	2 cut(s)	571, 1107
BspPI	GGATC	1 cut(s)	533
BspT107I	GGYRCC	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	813
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	760
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	8 cut(s)	490, 509, 628, 642, 807, 843, 888, 1098
BssMI	GATC	2 cut(s)	538, 751
BssT1I	CCWWGG	4 cut(s)	642, 807, 888, 1098
Bst4CI	ACNGT	3 cut(s)	67, 299, 1138
Bst6I	CTCTTC	3 cut(s)	183, 447, 582
BstC8I	GCNNGC	2 cut(s)	462, 619
BstDEI	CTNAG	7 cut(s)	219, 348, 465, 692, 942, 1032, 1125
BstDSI	CCRYGG	4 cut(s)	509, 628, 807, 1098
BstENI	CCTNNNNNAGG	1 cut(s)	546
BstF5I	GGATG	2 cut(s)	115, 924
BstFNI	CGCG	3 cut(s)	294, 415, 630
BstH2I	RGCGCY	2 cut(s)	95, 879
BstHHI	GCGC	2 cut(s)	94, 878
BstKTI	GATC	2 cut(s)	541, 754
BstMBI	GATC	2 cut(s)	538, 751
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	4 cut(s)	300, 590, 599, 627
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	842
BstUI	CGCG	3 cut(s)	294, 415, 630
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	1 cut(s)	669
Bsu36I	CCTNAGG	1 cut(s)	1125
BsuRI	GGCC	4 cut(s)	331, 524, 596, 812
BtgI	CCRYGG	4 cut(s)	509, 628, 807, 1098
BtsCI	GGATG	2 cut(s)	115, 924
BtsIMutI	CAGTG	1 cut(s)	72
BtuMI	TCGCGA	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	462, 619
CfoI	GCGC	2 cut(s)	94, 878
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	2 cut(s)	522, 595
Cfr42I	CCGCGG	1 cut(s)	631
CseI	GACGC	1 cut(s)	494
Csp6I	GTAC	4 cut(s)	84, 487, 570, 1048
CspCI	CAANNNNNGTGG	2 cut(s)	50, 85
CviAII	CATG	4 cut(s)	41, 808, 1057, 1099
CviQI	GTAC	4 cut(s)	84, 487, 570, 1048
DdeI	CTNAG	7 cut(s)	219, 348, 465, 692, 942, 1032, 1125
DpnI	GATC	2 cut(s)	540, 753
DpnII	GATC	2 cut(s)	538, 751
DriI	GACNNNNNGTC	1 cut(s)	1093
EaeI	YGGCCR	2 cut(s)	329, 810
Eam1104I	CTCTTC	3 cut(s)	183, 447, 582
Eam1105I	GACNNNNNGTC	1 cut(s)	1093
EarI	CTCTTC	3 cut(s)	183, 447, 582
EciI	GGCGGA	2 cut(s)	951, 1110
Eco130I	CCWWGG	4 cut(s)	642, 807, 888, 1098
Eco81I	CCTNAGG	1 cut(s)	1125
Eco88I	CYCGRG	1 cut(s)	597
EcoNI	CCTNNNNNAGG	1 cut(s)	546
EcoT14I	CCWWGG	4 cut(s)	642, 807, 888, 1098
ErhI	CCWWGG	4 cut(s)	642, 807, 888, 1098
FaeI	CATG	4 cut(s)	44, 811, 1060, 1102
FaiI	YATR	9 cut(s)	32, 42, 272, 326, 328, 750, 809, 1058, 1100
FatI	CATG	4 cut(s)	40, 807, 1056, 1098
FauI	CCCGC	1 cut(s)	685
FauNDI	CATATG	1 cut(s)	326
Fnu4HI	GCNGC	6 cut(s)	503, 525, 594, 631, 768, 1104
FokI	GGATG	2 cut(s)	102, 931
Fsp4HI	GCNGC	6 cut(s)	503, 525, 594, 631, 768, 1104
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	2 cut(s)	93, 877
GluI	GCNGC	6 cut(s)	503, 525, 594, 631, 768, 1104
GsaI	CCCAGC	1 cut(s)	902
HaeII	RGCGCY	2 cut(s)	95, 879
HaeIII	GGCC	4 cut(s)	331, 524, 596, 812
HapII	CCGG	3 cut(s)	332, 461, 843
HgaI	GACGC	1 cut(s)	494
HhaI	GCGC	2 cut(s)	94, 878
Hin1II	CATG	4 cut(s)	44, 811, 1060, 1102
Hin6I	GCGC	2 cut(s)	92, 876
HinP1I	GCGC	2 cut(s)	92, 876
HindIII	AAGCTT	2 cut(s)	727, 1025
HinfI	GANTC	5 cut(s)	335, 404, 532, 1075, 1114
HpaII	CCGG	3 cut(s)	332, 461, 843
HphI	GGTGA	2 cut(s)	304, 1154
Hpy188III	TCNNGA	6 cut(s)	252, 293, 359, 536, 1085, 1127
Hpy99I	CGWCG	6 cut(s)	23, 299, 309, 671, 1142, 1172
HpyAV	CCTTC	5 cut(s)	203, 352, 583, 683, 965
HpyCH4III	ACNGT	3 cut(s)	67, 299, 1138
HpyCH4V	TGCA	6 cut(s)	4, 378, 448, 906, 998, 1021
HpyF10VI	GCNNNNNNNGC	4 cut(s)	300, 590, 599, 627
HpyF3I	CTNAG	7 cut(s)	219, 348, 465, 692, 942, 1032, 1125
Hsp92II	CATG	4 cut(s)	44, 811, 1060, 1102
HspAI	GCGC	2 cut(s)	92, 876
KpnI	GGTACC	1 cut(s)	573
KroI	GCCGGC	1 cut(s)	460
KroNI	GCCGGC	1 cut(s)	462
KspI	CCGCGG	1 cut(s)	631
Kzo9I	GATC	2 cut(s)	538, 751
LmnI	GCTCC	4 cut(s)	938, 1036, 1111, 1155
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	1 cut(s)	543
MaeIII	GTNAC	2 cut(s)	310, 929
MalI	GATC	2 cut(s)	540, 753
MboI	GATC	2 cut(s)	538, 751
MboII	GAAGA	8 cut(s)	170, 361, 464, 490, 599, 674, 860, 1019
MfeI	CAATTG	1 cut(s)	831
MlsI	TGGCCA	1 cut(s)	812
MluCI	AATT	8 cut(s)	45, 649, 734, 781, 787, 831, 977, 1064
MluNI	TGGCCA	1 cut(s)	812
MlyI	GAGTC	2 cut(s)	329, 398
MmeI	TCCRAC	1 cut(s)	42
Mox20I	TGGCCA	1 cut(s)	812
MroNI	GCCGGC	1 cut(s)	460
MscI	TGGCCA	1 cut(s)	812
MseI	TTAA	3 cut(s)	48, 122, 230
Msp20I	TGGCCA	1 cut(s)	812
MspA1I	CMGCKG	1 cut(s)	630
MspI	CCGG	3 cut(s)	332, 461, 843
MspR9I	CCNGG	1 cut(s)	844
MunI	CAATTG	1 cut(s)	831
MvnI	CGCG	3 cut(s)	294, 415, 630
MwoI	GCNNNNNNNGC	4 cut(s)	300, 590, 599, 627
NaeI	GCCGGC	1 cut(s)	462
NciI	CCSGG	1 cut(s)	844
NcoI	CCATGG	2 cut(s)	807, 1098
NdeI	CATATG	1 cut(s)	326
NdeII	GATC	2 cut(s)	538, 751
NgoMIV	GCCGGC	1 cut(s)	460
NlaIII	CATG	4 cut(s)	44, 811, 1060, 1102
NlaIV	GGNNCC	2 cut(s)	571, 1107
NmeAIII	GCCGAG	1 cut(s)	553
NmuCI	GTSAC	2 cut(s)	310, 929
NruI	TCGCGA	1 cut(s)	294
NspI	RCATGY	1 cut(s)	44
PciI	ACATGT	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	3 cut(s)	666, 1167, 1173
PdiI	GCCGGC	1 cut(s)	462
PfeI	GAWTC	3 cut(s)	532, 1075, 1114
Pfl23II	CGTACG	1 cut(s)	1047
PkrI	GCNGC	6 cut(s)	504, 526, 595, 632, 769, 1105
PleI	GAGTC	2 cut(s)	329, 398
PpsI	GAGTC	2 cut(s)	329, 398
PscI	ACATGT	1 cut(s)	40
PshBI	ATTAAT	1 cut(s)	48
PspFI	CCCAGC	1 cut(s)	898
PspLI	CGTACG	1 cut(s)	1047
PspN4I	GGNNCC	2 cut(s)	571, 1107
PspPI	GGNCC	2 cut(s)	522, 595
RruI	TCGCGA	1 cut(s)	294
RsaI	GTAC	4 cut(s)	85, 488, 571, 1049
RsaNI	GTAC	4 cut(s)	84, 487, 570, 1048
SacII	CCGCGG	1 cut(s)	631
SaqAI	TTAA	3 cut(s)	48, 122, 230
SatI	GCNGC	6 cut(s)	503, 525, 594, 631, 768, 1104
Sau3AI	GATC	2 cut(s)	538, 751
Sau96I	GGNCC	2 cut(s)	522, 595
SchI	GAGTC	2 cut(s)	329, 398
ScrFI	CCNGG	1 cut(s)	844
SfaNI	GCATC	1 cut(s)	504
Sfr303I	CCGCGG	1 cut(s)	631
SgrBI	CCGCGG	1 cut(s)	631
Sse9I	AATT	8 cut(s)	45, 649, 734, 781, 787, 831, 977, 1064
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	1 cut(s)	842
StyI	CCWWGG	4 cut(s)	642, 807, 888, 1098
TaaI	ACNGT	3 cut(s)	67, 299, 1138
TaqI	TCGA	6 cut(s)	196, 245, 251, 372, 556, 1161
TasI	AATT	8 cut(s)	45, 649, 734, 781, 787, 831, 977, 1064
TauI	GCSGC	5 cut(s)	527, 596, 633, 770, 1106
TfiI	GAWTC	3 cut(s)	532, 1075, 1114
Tru1I	TTAA	3 cut(s)	48, 122, 230
Tru9I	TTAA	3 cut(s)	48, 122, 230
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	2 cut(s)	310, 929
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	2 cut(s)	310, 929
TspDTI	ATGAA	2 cut(s)	197, 1076
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	1 cut(s)	72
VspI	ATTAAT	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	546
XapI	RAATTY	1 cut(s)	1064
XceI	RCATGY	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	895
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.