Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010557

Physical Location & Seq

Genomic Coordinates Reverse (-)

633917 .. 636449

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCAGACTGGTCTTTCGAAGACATGAAACCTAAAAAGCACTGGATGTACGAAAGAGAAGGGTTGAGGAAAGTAGACTTCCCAAGTCACTGCAGTTATGGACCAGTGAACGAAGATGACCCTTACAAATGGCAAGGTATGATCATGGGGCCACCAGATTCTCCTTATGAGCAAGGTGTCTTCTTTCTCTCCATTGATTTGCCACCAGAATATCCTAATAAACCTCCCACCATTAAATTCCTAACCAAGGTTTATCATCCAAATATTAACGGCGAGGACGGGACTATTTACGTCGACATTTTAGAAGAGGATAAATGGAATCCAGTGCAGAACATTGAGAGCCTCCTGCTCTCCATTTGCTCACTTCTTGATGATCCAAACCCAGTGGATCCCCTCAATCCATCCTGCCTGCTCTTCCGTAAAGACAAAAAGAAGTTTGTCGAAACGGCCAAGGAGTGGACTAGGACGTATGCCATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

HeLo UQ_con

Protein Analysis

161

Amino Acids

18.7

Weight (kDa)

4.87

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	28 - 153	4.2e-42	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010557)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16400 FvH4_4g16400 FvH4_4g16400
malus_domestica	MD04G1008900.v1.1
prunus_persica	Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1
pyrus_communis	pycom04g00690
rosa_laevigata	RLG00000008086
rosa_multiflora	Rmu_sc0001421.1_g000010
rosa_roxburghii	Rroxscaffold_5G00359060
rosa_rugosa	Rorug04G0132500
rosa_samantha	Rh4AG193300 Rh4BG191700 Rh4CG204400 Rh4DG191200
rosa_wichuraiana	Rw4G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	456
AccI	GTMKAC	2 cut(s)	75, 294
AclWI	GGATC	3 cut(s)	368, 383, 396
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	247, 456
AlwI	GGATC	3 cut(s)	368, 383, 396
AoxI	GGCC	2 cut(s)	149, 447
ApoI	RAATTY	1 cut(s)	236
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	101, 149
AsuII	TTCGAA	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	101
BamHI	GGATCC	1 cut(s)	388
BbsI	GAAGAC	2 cut(s)	27, 172
BccI	CCATC	1 cut(s)	409
BceAI	ACGGC	2 cut(s)	286, 462
BclI	TGATCA	1 cut(s)	141
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	101, 149
BmiI	GGNNCC	2 cut(s)	150, 390
BmrI	ACTGGG	1 cut(s)	377
BmuI	ACTGGG	1 cut(s)	377
BpiI	GAAGAC	2 cut(s)	27, 172
Bpu14I	TTCGAA	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	246, 450
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 456
Bse1I	ACTGG	5 cut(s)	14, 47, 104, 323, 383
BseDI	CCNNGG	2 cut(s)	246, 450
BseGI	GGATG	3 cut(s)	51, 256, 401
BseLI	CCNNNNNNNGG	2 cut(s)	247, 456
BseNI	ACTGG	5 cut(s)	14, 47, 104, 323, 383
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	2 cut(s)	151, 449
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	2 cut(s)	247, 456
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	151, 449
Bsp119I	TTCGAA	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	141, 373, 388
BspANI	GGCC	2 cut(s)	151, 449
BspLI	GGNNCC	2 cut(s)	150, 390
BspMAI	CTGCAG	1 cut(s)	95
BspPI	GGATC	3 cut(s)	368, 383, 396
BspQI	GCTCTTC	1 cut(s)	419
BspT104I	TTCGAA	1 cut(s)	18
BsrI	ACTGG	5 cut(s)	14, 47, 104, 323, 383
BssECI	CCNNGG	2 cut(s)	246, 450
BssMI	GATC	3 cut(s)	141, 373, 388
BssT1I	CCWWGG	2 cut(s)	246, 450
Bst6I	CTCTTC	2 cut(s)	300, 419
BstBI	TTCGAA	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	410
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	3 cut(s)	51, 256, 401
BstKTI	GATC	3 cut(s)	144, 376, 391
BstMBI	GATC	3 cut(s)	141, 373, 388
BstSFI	CTRYAG	1 cut(s)	91
BstV2I	GAAGAC	2 cut(s)	27, 172
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	151, 449
BtsCI	GGATG	3 cut(s)	51, 256, 401
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	5 cut(s)	40, 88, 111, 330, 390
Cac8I	GCNNGC	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	101, 149
Csp6I	GTAC	1 cut(s)	49
CspCI	CAANNNNNGTGG	2 cut(s)	366, 401
CviAII	CATG	3 cut(s)	25, 145, 475
CviJI	RGCY	3 cut(s)	151, 342, 449
CviKI_1	RGCY	3 cut(s)	151, 342, 449
CviQI	GTAC	1 cut(s)	49
DpnI	GATC	3 cut(s)	143, 375, 390
DpnII	GATC	3 cut(s)	141, 373, 388
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	2 cut(s)	300, 419
EarI	CTCTTC	2 cut(s)	300, 419
Eco130I	CCWWGG	2 cut(s)	246, 450
Eco47I	GGWCC	1 cut(s)	101
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoT14I	CCWWGG	2 cut(s)	246, 450
ErhI	CCWWGG	2 cut(s)	246, 450
FaeI	CATG	3 cut(s)	28, 148, 478
FaiI	YATR	7 cut(s)	26, 99, 140, 146, 168, 471, 476
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	3 cut(s)	24, 144, 474
FbaI	TGATCA	1 cut(s)	141
FblI	GTMKAC	2 cut(s)	75, 294
FokI	GGATG	3 cut(s)	58, 243, 388
FspBI	CTAG	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	151, 449
Hin1II	CATG	3 cut(s)	28, 148, 478
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	158, 319
Hpy166II	GTNNAC	4 cut(s)	76, 109, 295, 459
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	4 cut(s)	76, 109, 295, 459
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	53
HpyCH4IV	ACGT	2 cut(s)	291, 467
HpyCH4V	TGCA	2 cut(s)	93, 328
HpySE526I	ACGT	2 cut(s)	291, 467
Hsp92II	CATG	3 cut(s)	28, 148, 478
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	3 cut(s)	141, 373, 388
LguI	GCTCTTC	1 cut(s)	419
LpnPI	CCDG	9 cut(s)	28, 117, 168, 219, 336, 359, 396, 418, 422
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	2 cut(s)	291, 467
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	3 cut(s)	143, 375, 390
MboI	GATC	3 cut(s)	141, 373, 388
MboII	GAAGA	5 cut(s)	32, 125, 172, 317, 406
MflI	RGATCY	1 cut(s)	388
MluCI	AATT	1 cut(s)	236
MnlI	CCTC	6 cut(s)	60, 234, 268, 301, 353, 404
MseI	TTAA	2 cut(s)	234, 267
NdeII	GATC	3 cut(s)	141, 373, 388
NlaIII	CATG	3 cut(s)	28, 148, 478
NlaIV	GGNNCC	2 cut(s)	150, 390
NmuCI	GTSAC	1 cut(s)	86
NspV	TTCGAA	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	158, 319
PflMI	CCANNNNNTGG	1 cut(s)	456
PspN4I	GGNNCC	2 cut(s)	150, 390
PspPI	GGNCC	2 cut(s)	101, 149
PstI	CTGCAG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SalI	GTCGAC	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	234, 267
Sau3AI	GATC	3 cut(s)	141, 373, 388
Sau96I	GGNCC	2 cut(s)	101, 149
SetI	ASST	7 cut(s)	34, 139, 178, 226, 252, 294, 470
SfcI	CTRYAG	1 cut(s)	91
SfuI	TTCGAA	1 cut(s)	18
SinI	GGWCC	1 cut(s)	101
Sse9I	AATT	1 cut(s)	236
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	1 cut(s)	462
StyI	CCWWGG	2 cut(s)	246, 450
TaiI	ACGT	2 cut(s)	294, 470
TaqI	TCGA	3 cut(s)	18, 294, 441
TasI	AATT	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	158, 319
Tru1I	TTAA	2 cut(s)	234, 267
Tru9I	TTAA	2 cut(s)	234, 267
TscAI	CASTG	5 cut(s)	47, 95, 111, 330, 390
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	41
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	5 cut(s)	47, 95, 111, 330, 390
Van91I	CCANNNNNTGG	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	236
XmiI	GTMKAC	2 cut(s)	75, 294
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.