pycom04g01540
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
1434643 .. 1436412
1770 bp
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UTR
Exon/CDS
Intron
pycom04g01540.1

Sequence Viewer

Length: 1323 bp
ATGATTGCTGGTATAGTTATTGCCGTTGTTATTTTCGTTGTGGTAGTATTGTTTGTGTCCTACAAATGTTATGCTAGTAAAAAGCATAAGAAATTTGGAAGGGTGGCTAATCCATTAACTGGGATAGAAATTGCTAAGAGTGATGTTATGAGTAGCGCAAATGGGTACAATGGAGTTACAAGTGAACTGCAAAGCCAGAGCAGTGGTGACCTTCATGTTTTTGAGGGTGGAAATGTTGCGATTTCGATCCAAGTTCTAAGACAAGTGACAAACAATTTTAGCGAGGACAACATATTAGGCAGAGGAGGATTTGGAATTGTTTATAAAGGCGAATTGCATGATGGGACCAAAATTGCCGTCAAACGGATGGAATCTGTGGCAGTAGGCACTAAGGGATTGAACGAGTTTCAGGCAGAAATCGCAGTCCTTACTAAGGTCAGGCATAGGCATTTGGTTGCGCTTTTGGGATCCTGTATCAATGGCAATGAGAGACTTTTGGTCTACGAGTACATGCCACAAGGGACTTTAACACAGCATTTATTTGAATGGCGCGAGATTGGAGTGCCTCCACTGACTTGGAAGCAGAGAGTAACAATAGCATTGGATGTGGCACGAGGAGTGGAATATTTGCACAGCTTGGCTCAACAAAGTTTCATTCACAGAGATTTAAAGCCCTCAAACATACTTCTGGGCGATGACATGAGGGCCAAGGTTGCTGACTTCGGACTGGTTAAAAACGCGCCCGACGGGAAGTATTCTGTTGAGACAAGGTTGGCAGGGACATTCGGGTATCTCGCACCAGAATATGCAGCTACTGGCAGAGTCACTACAAAAGTAGATGTTTATGCTTTCGGAGTGGTTTTGATGGAGTTGATAAGCGGTAGAAAAGCTCTCGATGATACAATGCCAGATGAGCGGTCTCATTTGGTCTCATGGTTCCGCAGAGTCCTTGTCAACAAAGAAAACATTCCAAAGGCTATTGACCAAACTCTTGACCCGGATGAGGAGACAATGGAGAGCATATACAAAGTTGCTGAGCTGGCAGGATACTGCACTGCTCGTGAGCCGTACCAGAGACCAGACATGGGACATGCTGTCAACATCCTGGGTCCTCTTGTTGAGCACTGGAAGCCTTCCACCCATGAAGAAGAAAACTCTGGCATCGACCTGCACATGAGCCTTCCGCAAGCGTTGCAAAGATGGCAAGCCAATGAAGGTACTTCTAGGATGTTTGATGATATGTCCTTCTCTCAAACTCAATCAAGCATCCCTTCAAAACCTTCCGGATTTGCTGACTCATTTGATTCAATGGATTGTCGATGA

Protein Analysis

441

Amino Acids

48.77

Weight (kDa)

6.13

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 94 - 366 7.6e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 96 - 364 6.6e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
Acc36I ACCTGC 1 cut(s) 1176
AccB7I CCANNNNNTGG 1 cut(s) 119
AccBSI CCGCTC 1 cut(s) 916
AccI GTMKAC 1 cut(s) 501
AccII CGCG 2 cut(s) 552, 740
AccIII TCCGGA 1 cut(s) 1283
AciI CCGC 4 cut(s) 879, 916, 940, 1184
AclWI GGATC 3 cut(s) 241, 462, 475
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 4 cut(s) 167, 509, 1070, 1219
AfiI CCNNNNNNNGG 5 cut(s) 119, 363, 433, 1003, 1085
AgsI TTSAA 4 cut(s) 400, 545, 1275, 1308
AhdI GACNNNNNGTC 2 cut(s) 497, 1094
AjnI CCWGG 1 cut(s) 1104
AluBI AGCT 4 cut(s) 636, 812, 890, 1039
AluI AGCT 4 cut(s) 636, 812, 890, 1039
Alw21I GWGCWC 1 cut(s) 1125
Alw26I GTCTC 6 cut(s) 484, 758, 924, 934, 1001, 1069
AlwI GGATC 3 cut(s) 241, 462, 475
AlwNI CAGNNNCTG 1 cut(s) 815
Aor13HI TCCGGA 1 cut(s) 1283
AoxI GGCC 1 cut(s) 705
ApeKI GCWGC 1 cut(s) 809
ApoI RAATTY 1 cut(s) 92
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
Asp700I GAANNNNTTC 1 cut(s) 966
AspLEI GCGC 4 cut(s) 158, 460, 552, 742
AspS9I GGNCC 3 cut(s) 345, 705, 1109
AsuC2I CCSGG 1 cut(s) 998
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 2 cut(s) 345, 1109
BamHI GGATCC 1 cut(s) 467
BauI CACGAG 2 cut(s) 612, 1059
Bbv12I GWGCWC 1 cut(s) 1125
BbvI GCAGC 1 cut(s) 821
BccI CCATC 4 cut(s) 335, 361, 859, 1194
BceAI ACGGC 3 cut(s) 8, 341, 1051
BciT130I CCWGG 1 cut(s) 1106
BciVI GTATCC 1 cut(s) 1040
BcnI CCSGG 1 cut(s) 998
BcoDI GTCTC 6 cut(s) 484, 758, 924, 934, 1001, 1069
BfaI CTAG 2 cut(s) 75, 1224
BfuAI ACCTGC 1 cut(s) 1176
BfuI GTATCC 1 cut(s) 1040
BisI GCNGC 1 cut(s) 810
BlpI GCTNAGC 1 cut(s) 1035
BlsI GCNGC 1 cut(s) 811
Bme1390I CCNGG 2 cut(s) 998, 1106
Bme18I GGWCC 2 cut(s) 345, 1109
BmeRI GACNNNNNGTC 2 cut(s) 497, 1094
BmgT120I GGNCC 3 cut(s) 345, 705, 1109
BmiI GGNNCC 4 cut(s) 346, 469, 938, 1110
BmrFI CCNGG 2 cut(s) 998, 1106
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 1170, 1275
BmuI ACTGGG 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 1035
BpuMI CCSGG 1 cut(s) 998
BsaBI GATNNNNATC 1 cut(s) 245
BsaI GGTCTC 3 cut(s) 924, 934, 1069
BsaJI CCNNGG 2 cut(s) 708, 1105
BsaWI WCCGGW 1 cut(s) 1283
Bsc4I CCNNNNNNNGG 5 cut(s) 119, 363, 433, 1003, 1085
Bse1I ACTGG 4 cut(s) 124, 732, 820, 1130
Bse3DI GCAATG 1 cut(s) 490
Bse8I GATNNNNATC 1 cut(s) 245
BseAI TCCGGA 1 cut(s) 1283
BseBI CCWGG 1 cut(s) 1106
BseDI CCNNGG 2 cut(s) 708, 1105
BseGI GGATG 6 cut(s) 372, 610, 1006, 1101, 1233, 1266
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 5 cut(s) 119, 363, 433, 1003, 1085
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 1 cut(s) 1026
BseNI ACTGG 4 cut(s) 124, 732, 820, 1130
BseRI GAGGAG 3 cut(s) 318, 630, 1019
BseXI GCAGC 1 cut(s) 821
BsgI GTGCAG 2 cut(s) 1036, 1154
Bsh1236I CGCG 2 cut(s) 552, 740
BshFI GGCC 1 cut(s) 707
BsiHKAI GWGCWC 1 cut(s) 1125
BsiSI CCGG 2 cut(s) 998, 1284
BslFI GGGAC 4 cut(s) 358, 535, 793, 1101
BslI CCNNNNNNNGG 5 cut(s) 119, 363, 433, 1003, 1085
BsmAI GTCTC 6 cut(s) 484, 758, 924, 934, 1001, 1069
BsmFI GGGAC 4 cut(s) 358, 535, 793, 1101
BsnI GGCC 1 cut(s) 707
Bso31I GGTCTC 3 cut(s) 924, 934, 1069
Bsp1286I GDGCHC 1 cut(s) 1125
Bsp13I TCCGGA 1 cut(s) 1283
Bsp143I GATC 2 cut(s) 246, 467
Bsp1720I GCTNAGC 1 cut(s) 1035
BspACI CCGC 4 cut(s) 879, 916, 940, 1184
BspANI GGCC 1 cut(s) 707
BspCNI CTCAG 1 cut(s) 1027
BspEI TCCGGA 1 cut(s) 1283
BspFNI CGCG 2 cut(s) 552, 740
BspLI GGNNCC 4 cut(s) 346, 469, 938, 1110
BspMI ACCTGC 1 cut(s) 1176
BspPI GGATC 3 cut(s) 241, 462, 475
BspTNI GGTCTC 3 cut(s) 924, 934, 1069
BsrBI CCGCTC 1 cut(s) 916
BsrDI GCAATG 1 cut(s) 490
BsrI ACTGG 4 cut(s) 124, 732, 820, 1130
BssECI CCNNGG 2 cut(s) 708, 1105
BssMI GATC 2 cut(s) 246, 467
BssSI CACGAG 2 cut(s) 612, 1059
BssT1I CCWWGG 1 cut(s) 708
Bst2BI CACGAG 2 cut(s) 612, 1059
Bst2UI CCWGG 1 cut(s) 1106
BstAPI GCANNNNNTGC 1 cut(s) 1192
BstC8I GCNNGC 3 cut(s) 1041, 1188, 1206
BstDEI CTNAG 5 cut(s) 135, 257, 390, 432, 1035
BstEII GGTNACC 1 cut(s) 206
BstENI CCTNNNNNAGG 1 cut(s) 431
BstF5I GGATG 6 cut(s) 372, 610, 1006, 1101, 1233, 1266
BstFNI CGCG 2 cut(s) 552, 740
BstHHI GCGC 4 cut(s) 158, 460, 552, 742
BstKTI GATC 2 cut(s) 249, 470
BstMAI GTCTC 6 cut(s) 484, 758, 924, 934, 1001, 1069
BstMBI GATC 2 cut(s) 246, 467
BstMWI GCNNNNNNNGC 7 cut(s) 419, 713, 913, 1040, 1129, 1192, 1201
BstNI CCWGG 1 cut(s) 1106
BstNSI RCATGY 2 cut(s) 514, 1094
BstPI GGTNACC 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 996, 1104
BstUI CGCG 2 cut(s) 552, 740
BstV1I GCAGC 1 cut(s) 821
BstX2I RGATCY 1 cut(s) 467
BstXI CCANNNNNNTGG 2 cut(s) 203, 576
BstYI RGATCY 1 cut(s) 467
BsuI GTATCC 1 cut(s) 1040
BsuRI GGCC 1 cut(s) 707
BtgZI GCGATG 1 cut(s) 708
BtsCI GGATG 6 cut(s) 372, 610, 1006, 1101, 1233, 1266
BtsI GCAGTG 2 cut(s) 208, 1053
BtsIMutI CAGTG 4 cut(s) 208, 569, 1053, 1123
BveI ACCTGC 1 cut(s) 1176
Cac8I GCNNGC 3 cut(s) 1041, 1188, 1206
CaiI CAGNNNCTG 1 cut(s) 815
CfoI GCGC 4 cut(s) 158, 460, 552, 742
Cfr13I GGNCC 3 cut(s) 345, 705, 1109
Csp6I GTAC 4 cut(s) 166, 508, 1069, 1218
CviAII CATG 9 cut(s) 215, 338, 511, 700, 933, 1084, 1091, 1142, 1174
CviQI GTAC 4 cut(s) 166, 508, 1069, 1218
DdeI CTNAG 5 cut(s) 135, 257, 390, 432, 1035
DpnI GATC 2 cut(s) 248, 469
DpnII GATC 2 cut(s) 246, 467
DraI TTTAAA 1 cut(s) 669
DriI GACNNNNNGTC 2 cut(s) 497, 1094
Eam1105I GACNNNNNGTC 2 cut(s) 497, 1094
Eco130I CCWWGG 1 cut(s) 708
Eco31I GGTCTC 3 cut(s) 924, 934, 1069
Eco47I GGWCC 2 cut(s) 345, 1109
Eco91I GGTNACC 1 cut(s) 206
EcoNI CCTNNNNNAGG 1 cut(s) 431
EcoO109I RGGNCCY 1 cut(s) 1109
EcoO65I GGTNACC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 1104
EcoT14I CCWWGG 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 708
FaeI CATG 9 cut(s) 218, 341, 514, 703, 936, 1087, 1094, 1145, 1177
FalI AAGNNNNNCTT 2 cut(s) 1255, 1287
FaqI GGGAC 4 cut(s) 358, 535, 793, 1101
FatI CATG 9 cut(s) 214, 337, 510, 699, 932, 1083, 1090, 1141, 1173
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 1 cut(s) 810
FokI GGATG 6 cut(s) 379, 617, 1013, 1088, 1240, 1253
Fsp4HI GCNGC 1 cut(s) 810
FspBI CTAG 2 cut(s) 75, 1224
GlaI GCGC 4 cut(s) 157, 459, 551, 741
GluI GCNGC 1 cut(s) 810
HaeIII GGCC 1 cut(s) 707
HapII CCGG 2 cut(s) 998, 1284
HhaI GCGC 4 cut(s) 158, 460, 552, 742
Hin1II CATG 9 cut(s) 218, 341, 514, 703, 936, 1087, 1094, 1145, 1177
Hin6I GCGC 4 cut(s) 156, 458, 550, 740
HinP1I GCGC 4 cut(s) 156, 458, 550, 740
HincII GTYRAC 2 cut(s) 955, 1099
HindII GTYRAC 2 cut(s) 955, 1099
HinfI GANTC 5 cut(s) 371, 822, 945, 1295, 1304
HpaII CCGG 2 cut(s) 998, 1284
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 4 cut(s) 185, 502, 955, 1099
Hpy188I TCNGA 2 cut(s) 725, 854
Hpy188III TCNNGA 4 cut(s) 893, 992, 1061, 1284
Hpy8I GTNNAC 4 cut(s) 185, 502, 955, 1099
Hpy99I CGWCG 1 cut(s) 749
HpyAV CCTTC 8 cut(s) 93, 221, 1143, 1190, 1208, 1255, 1281, 1290
HpyCH4V TGCA 7 cut(s) 190, 337, 631, 809, 1053, 1171, 1195
HpyF10VI GCNNNNNNNGC 7 cut(s) 419, 713, 913, 1040, 1129, 1192, 1201
HpyF3I CTNAG 5 cut(s) 135, 257, 390, 432, 1035
Hsp92II CATG 9 cut(s) 218, 341, 514, 703, 936, 1087, 1094, 1145, 1177
HspAI GCGC 4 cut(s) 156, 458, 550, 740
Kpn2I TCCGGA 1 cut(s) 1283
Kzo9I GATC 2 cut(s) 246, 467
Lsp1109I GCAGC 1 cut(s) 821
LweI GCATC 2 cut(s) 1170, 1275
MaeI CTAG 2 cut(s) 75, 1224
MaeIII GTNAC 5 cut(s) 175, 206, 265, 589, 823
MalI GATC 2 cut(s) 248, 469
MbiI CCGCTC 1 cut(s) 916
MboI GATC 2 cut(s) 246, 467
MboII GAAGA 2 cut(s) 1157, 1160
MflI RGATCY 1 cut(s) 467
MhlI GDGCHC 1 cut(s) 1125
MluCI AATT 6 cut(s) 92, 129, 274, 315, 332, 351
MlyI GAGTC 3 cut(s) 831, 954, 1289
MroI TCCGGA 1 cut(s) 1283
MroXI GAANNNNTTC 1 cut(s) 966
MseI TTAA 4 cut(s) 116, 527, 668, 732
MspI CCGG 2 cut(s) 998, 1284
MspR9I CCNGG 2 cut(s) 998, 1106
MvaI CCWGG 1 cut(s) 1106
MvnI CGCG 2 cut(s) 552, 740
MwoI GCNNNNNNNGC 7 cut(s) 419, 713, 913, 1040, 1129, 1192, 1201
NciI CCSGG 1 cut(s) 998
NdeII GATC 2 cut(s) 246, 467
NlaIII CATG 9 cut(s) 218, 341, 514, 703, 936, 1087, 1094, 1145, 1177
NlaIV GGNNCC 4 cut(s) 346, 469, 938, 1110
NmuCI GTSAC 3 cut(s) 206, 265, 823
NspI RCATGY 2 cut(s) 514, 1094
PdmI GAANNNNTTC 1 cut(s) 966
PfeI GAWTC 2 cut(s) 371, 1304
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 1 cut(s) 811
PleI GAGTC 3 cut(s) 830, 953, 1289
PpsI GAGTC 3 cut(s) 830, 953, 1289
PpuMI RGGWCCY 1 cut(s) 1109
PsiI TTATAA 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 1109
Psp6I CCWGG 1 cut(s) 1104
PspEI GGTNACC 1 cut(s) 206
PspGI CCWGG 1 cut(s) 1104
PspN4I GGNNCC 4 cut(s) 346, 469, 938, 1110
PspPI GGNCC 3 cut(s) 345, 705, 1109
PspPPI RGGWCCY 1 cut(s) 1109
PstNI CAGNNNCTG 1 cut(s) 815
PsuI RGATCY 1 cut(s) 467
RsaI GTAC 4 cut(s) 167, 509, 1070, 1219
RsaNI GTAC 4 cut(s) 166, 508, 1069, 1218
SaqAI TTAA 4 cut(s) 116, 527, 668, 732
SatI GCNGC 1 cut(s) 810
Sau3AI GATC 2 cut(s) 246, 467
Sau96I GGNCC 3 cut(s) 345, 705, 1109
SchI GAGTC 3 cut(s) 831, 954, 1289
ScrFI CCNGG 2 cut(s) 998, 1106
SduI GDGCHC 1 cut(s) 1125
SfaNI GCATC 2 cut(s) 1170, 1275
SinI GGWCC 2 cut(s) 345, 1109
Sse9I AATT 6 cut(s) 92, 129, 274, 315, 332, 351
SsiI CCGC 4 cut(s) 879, 916, 940, 1184
SspI AATATT 1 cut(s) 626
SspMI CTAG 2 cut(s) 75, 1224
StyD4I CCNGG 2 cut(s) 996, 1104
StyI CCWWGG 1 cut(s) 708
TaqI TCGA 4 cut(s) 245, 894, 1164, 1318
TasI AATT 6 cut(s) 92, 129, 274, 315, 332, 351
TatI WGTACW 1 cut(s) 507
TfiI GAWTC 2 cut(s) 371, 1304
Tru1I TTAA 4 cut(s) 116, 527, 668, 732
Tru9I TTAA 4 cut(s) 116, 527, 668, 732
TscAI CASTG 4 cut(s) 208, 576, 1060, 1130
TseFI GTSAC 3 cut(s) 206, 265, 823
TseI GCWGC 1 cut(s) 809
Tsp45I GTSAC 3 cut(s) 206, 265, 823
TspDTI ATGAA 4 cut(s) 203, 643, 1158, 1227
TspGWI ACGGA 1 cut(s) 379
TspRI CASTG 4 cut(s) 208, 576, 1060, 1130
Van91I CCANNNNNTGG 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 345, 1109
XagI CCTNNNNNAGG 1 cut(s) 431
XapI RAATTY 1 cut(s) 92
XceI RCATGY 2 cut(s) 514, 1094
XmiI GTMKAC 1 cut(s) 501
XmnI GAANNNNTTC 1 cut(s) 966
XspI CTAG 2 cut(s) 75, 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.