Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006862

Physical Location & Seq

Genomic Coordinates Forward (+)

44209702 .. 44214742

Gene Structure 5041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG176200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2757 bp

ATGGGTCCTGTGAAAACCCTACAAGCCCTCTTCCTCTTTCTACCCCTCCTCCTCATCTTCACCGCCGCCGACGACGCCGCCGTCATGTCCAAGCTCCTCGAGAACCTCAAACCCAGCGGCTGGTCCTCCTCCGCATCCTACTGCACCTGGGACGGCGTCAAATGCGACTCCGATTCTTCCAAACGAGTCACCTCCATCAGCTTAGCCTCCAACTCCCTCTCCGGCTCTCTCCCTTCAAATCTCAACGAACTCACCGAGCTCACCACTCTCTCTCTCCAAAGCAACACTCTTTCCGGCGCCTTACCTTCCCTCGCCAACCTCTCCAACCTCCAAGAAGTCTACCTCGACACCAATAACTTCACTTCCATTCCCCCCGGCTGCTTCGGAGGCTTGACCGGCTTGCAGACCTTGAGCATGAGCAACAATGTCGATCTTGCCCCTTGGGCGTTCCCATCTGAGCTCATCCAGTCTACCAGCCTGGTCACTCTTCAAGCAGGTAGCACCAACATGTATGGCAGCATTCCTGATATTTTCGGCTCTTTTGCAAACTTGCAAAATGTGAGATTGTCTTACAACAATCTTACTGGGCCTCTGCCCAAATCATTTTCTGGATCTGGGATTCAAAACCTCTGGATTAACAATCAGGCCGTTGGGTTAACTGGTACCGTTGAGGTTCTGTCCAACATGACTTCGTTGATTCAAGCGTGGCTGCATAAGAATCAGTTCACTGGTACGATCCCGGACCTGTCGCAATGTACTGCTCTCTCTGATCTTCTGCTTCGTGACAATGTCTTTACTGGGATGGTGCCGGCGACGTTGACGGCGTTGTCTTCTTTGCAAAATGTTTCTTTGGACAACAATAAGCTTCAGGGTCCTATGCTGGAGTTTGGGTCCAAGGTGAAGGTCACTTTTGATGGTAATAGCTTTTGCAAAACCACTGCTGGGCCTTGTGATCCACAGGTCACTACGCTGCTTCAGGTTGCAGGGGCTTTTGGGTACCCGGAATTATTGGCTGAGTCTTGGACTGGAGACGATGCATGCGGAGGGTGGAGCTTCGTTATTTGTGATGCTCAGAAGGTAGTTACAGTGAATCTGGACAACAAGCATCTCAATGGGACTATTTCACCTGCCTTTGCCAACCTCACATCGTTGAAAACTTTGGTGCTGAAAAACAACAACTTGACGGGTCCGATACCGGCTACCCTGACAACATTACCTCAGCTGGCGGTTTTTGATGCTTCCAATAACAATTTATATGGGGACATTCCGAAATTTCCTTCTAGGGTGAAGTTGACTACTAGTGGTAATCCATTGATTGGGACTACGCCGAGCTCTGGAGGTGGAGGGAGTGCACCTCCTGGTAACAACTCAACTGCACCTGGTGGAAGTCCGTCTCCATCATCCAACGGTTCTTCAGTGTCACCCGGTATGATTGCTGGTATAGTTATTGCTGTTGCTATTTTCATTGGAGTGTTGTTGTTTGTATTCATCAAATGTTATTTGAGTAAAAGGCATAGGAAGTTTGGAAGAGTGGATAATACGCTGAATGGAATTGAAATTGCCAAGAGTGACGCAACCAGTTGTGCAAATGGGTACAATGGAGTTGCAAGTGAGTTGCATAGCCAGAGCAGTGGTGACCTTCATGTTTTTGAGGGTGGAAATGTCGCCATTTCGATCCAAGTTCTTAGACAAGTGACAAACAATTTTAGTGAGGATAATATATTGGGTAGAGGAGGATTTGGAGTTGTTTATAAAGGTGAATTGCATGATGGGACTAAAATTGCTGTTAAAAGGATGGAATCTGTGGCAGTGGGTACTAAGGGATTGAATGAGTTTCAAGCAGAAATTGCAGTCCTCACTAAGGTTAGGCATAGGCATTTGGTTGCTCTGTTAGGATATTGCATTAATGGTAATGAGAGACTTTTAGTGTACGAGTACATGCCACAAGGAACGTTGACACAACATTTGTTTGATTGGCAAGAGAATGGGGTAACTCCTCTTACTTGGAAGCAGAGAGTGACAATAGCTTTGGATGTGGCAAGAGGAGTGGAATATCTACACAGCTTAGCTCAACAAAGTTTCATTCACAGAGATTTGAAACCTTCAAATATACTTCTTGGCGATGACATGAGGGCGAAGGTTGCGGACTTTGGTTTGGTTAAAAATGCCCCCGACGGAAAGTATTCAGTTGAGACACGATTGGCAGGGACATTCGGGTATCTTGCACCAGAATATGCAGCTACCGGCAGAGTGACAACAAAGGTGGATGTTTATGCATTTGGAGTGGTGTTGATGGAGTTGATGAGTGGTCGAAAAGCTCTAGATGATACCATGCCAGATGAAAGGTCTCATTTGGTCTCATGGTTTCGCAGAGTCCTTGTCAACAAAGAAAACATCCCCAAGTCCATCGACGAAACTCTTGACCCTGATGAGGAGACAATGGAGAGCATATACAAAGTTGCCGAGCTTGCGGGACACTGCACAGCTCGTGAGCCATATCAGAGACCAGACATGGGCCATGCAGTCAACATCTTGGGTCCTCTTGTTGAGCACTGGAAACCTACAACCCATGAAGAAGAAGATGAAAACAGTGGCATTAACATGCATATGAACCTTTCACAAGCAGTGCAAAGATGGCAAGCTGATGAAGGTACTTCAAGGATGTTTGATGATCTGTCCTATAGCCATACTCAATCAAGCATCCCTTCAAAACCTTCCGGGTTTGCAGACTCATTTGATTCAATGGACTGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

918

Amino Acids

98.83

Weight (kDa)

5.46

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	108 - 142	7.9e-07	Leucine rich repeat
LRR_8	PF13855	360 - 418	1.5e-06	Leucine rich repeat
Pkinase	PF00069	570 - 842	2.1e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	572 - 840	2.2e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23750
fragaria_vesca	FvH4_4g13110 FvH4_4g13110
malus_domestica	MD04G1019100.v1.1
prunus_persica	Prupe.1G168400_v2.0.a1 Prupe.1G168500_v2.0.a1 Prupe.1G168500_v2.0.a1
pyrus_communis	pycom04g01540 pycom13g29180
rosa_chinensis	RchiOBHm_Chr4g0412891 RchiOBHm_Chr4g0413671
rosa_laevigata	RLG00000008202 RLG00000008250
rosa_multiflora	Rmu_sc0004133.1_g000014 Rmu_sc0005621.1_g000017 Rmu_sc0012279.1_g000002
rosa_roxburghii	Rroxscaffold_5G00357130
rosa_rugosa	Rorug04G0117300
rosa_samantha	Rh4AG176200 Rh4AG181600 Rh4BG176600 Rh4CG187200 Rh4DG173400 Rh4DG177100
rosa_wichuraiana	Rw4G014790 Rw4G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1752
AarI	CACCTGC	1 cut(s)	1135
AasI	GACNNNNNNGTC	2 cut(s)	80, 826
Acc36I	ACCTGC	2 cut(s)	485, 1135
Acc65I	GGTACC	2 cut(s)	662, 996
AccB1I	GGYRCC	4 cut(s)	296, 662, 805, 996
AccB7I	CCANNNNNTGG	2 cut(s)	120, 1316
AccI	GTMKAC	2 cut(s)	339, 470
AciI	CCGC	9 cut(s)	63, 66, 78, 117, 132, 1041, 1226, 2144, 2471
AclI	AACGTT	1 cut(s)	1952
AclWI	GGATC	4 cut(s)	619, 730, 947, 1669
AcsI	RAATTY	1 cut(s)	1271
AcuI	CTGAAG	3 cut(s)	851, 959, 1398
AcyI	GRCGYC	3 cut(s)	75, 156, 297
AdeI	CACNNNGTG	1 cut(s)	1382
AfaI	GTAC	9 cut(s)	664, 733, 757, 998, 1595, 1816, 1931, 1937, 2653
AfiI	CCNNNNNNNGG	7 cut(s)	120, 942, 1316, 1334, 1861, 2431, 2513
AflIII	ACRYGT	1 cut(s)	507
AhlI	ACTAGT	1 cut(s)	1298
AjnI	CCWGG	4 cut(s)	146, 477, 1357, 1378
Alw21I	GWGCWC	5 cut(s)	261, 462, 1334, 1354, 2553
Alw26I	GTCTC	8 cut(s)	1023, 1398, 1912, 2186, 2352, 2362, 2429, 2497
Alw44I	GTGCAC	1 cut(s)	1350
AlwI	GGATC	4 cut(s)	619, 730, 947, 1669
AlwNI	CAGNNNCTG	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	4 cut(s)	587, 645, 944, 2515
ApaLI	GTGCAC	1 cut(s)	1350
ApeKI	GCWGC	5 cut(s)	378, 516, 709, 970, 2237
ApoI	RAATTY	1 cut(s)	1271
ArsI	GACNNNNNNTTYG	4 cut(s)	1948, 1980, 2011, 2043
AseI	ATTAAT	1 cut(s)	1905
Asp700I	GAANNNNTTC	2 cut(s)	722, 2182
Asp718I	GGTACC	2 cut(s)	662, 996
AspLEI	GCGC	1 cut(s)	299
AsuC2I	CCSGG	5 cut(s)	375, 740, 1001, 1425, 2719
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	7 cut(s)	5, 123, 742, 872, 891, 1187, 2537
BaeGI	GKGCMC	1 cut(s)	1354
BanI	GGYRCC	4 cut(s)	296, 662, 805, 996
BanII	GRGCYC	3 cut(s)	261, 462, 1334
BauI	CACGAG	1 cut(s)	2487
BbsI	GAAGAC	1 cut(s)	822
Bbv12I	GWGCWC	5 cut(s)	261, 462, 1334, 1354, 2553
BbvCI	CCTCAGC	1 cut(s)	1218
BbvI	GCAGC	5 cut(s)	365, 528, 696, 957, 2249
BceAI	ACGGC	4 cut(s)	65, 169, 632, 837
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BciT130I	CCWGG	4 cut(s)	148, 479, 1359, 1380
BcnI	CCSGG	5 cut(s)	375, 740, 1001, 1425, 2719
BcoDI	GTCTC	8 cut(s)	1023, 1398, 1912, 2186, 2352, 2362, 2429, 2497
BcuI	ACTAGT	1 cut(s)	1298
BfaI	CTAG	3 cut(s)	1281, 1299, 2321
BfmI	CTRYAG	1 cut(s)	2680
BfoI	RGCGCY	1 cut(s)	300
BfuAI	ACCTGC	2 cut(s)	485, 1135
BglI	GCCNNNNNGGC	1 cut(s)	443
BisI	GCNGC	8 cut(s)	66, 78, 118, 379, 517, 710, 971, 2238
BlpI	GCTNAGC	2 cut(s)	202, 2065
BlsI	GCNGC	8 cut(s)	67, 79, 119, 380, 518, 711, 972, 2239
Bme1390I	CCNGG	9 cut(s)	148, 375, 479, 740, 1001, 1359, 1380, 1425, 2719
Bme18I	GGWCC	7 cut(s)	5, 123, 742, 872, 891, 1187, 2537
BmeT110I	CYCGRG	1 cut(s)	98
BmiI	GGNNCC	9 cut(s)	6, 298, 664, 807, 873, 892, 998, 1188, 2538
BmrFI	CCNGG	9 cut(s)	148, 375, 479, 740, 1001, 1359, 1380, 1425, 2719
BmrI	ACTGGG	2 cut(s)	594, 807
BmsI	GCATC	6 cut(s)	143, 1024, 1057, 1114, 1225, 2709
BmuI	ACTGGG	2 cut(s)	594, 807
BpiI	GAAGAC	1 cut(s)	822
BplI	GAGNNNNNCTC	2 cut(s)	1339, 1371
BpmI	CTGGAG	3 cut(s)	902, 1047, 1356
Bpu10I	CCTNAGC	1 cut(s)	1218
Bpu1102I	GCTNAGC	2 cut(s)	202, 2065
BpuEI	CTTGAG	1 cut(s)	430
BpuMI	CCSGG	5 cut(s)	375, 740, 1001, 1425, 2719
BsaHI	GRCGYC	3 cut(s)	75, 156, 297
BsaI	GGTCTC	3 cut(s)	2352, 2362, 2497
BsaJI	CCNNGG	4 cut(s)	147, 373, 440, 894
BsaXI	ACNNNNNCTCC	6 cut(s)	33, 63, 203, 233, 875, 905
Bsc4I	CCNNNNNNNGG	7 cut(s)	120, 942, 1316, 1334, 1861, 2431, 2513
Bse118I	RCCGGY	4 cut(s)	395, 808, 1195, 2243
Bse1I	ACTGG	8 cut(s)	466, 589, 664, 733, 802, 1030, 1578, 2558
Bse3DI	GCAATG	1 cut(s)	758
BseBI	CCWGG	4 cut(s)	148, 479, 1359, 1380
BseDI	CCNNGG	4 cut(s)	147, 373, 440, 894
BseLI	CCNNNNNNNGG	7 cut(s)	120, 942, 1316, 1334, 1861, 2431, 2513
BseMI	GCAATG	1 cut(s)	758
BseMII	CTCAG	4 cut(s)	447, 1005, 1085, 1232
BseNI	ACTGG	8 cut(s)	466, 589, 664, 733, 802, 1030, 1578, 2558
BseRI	GAGGAG	8 cut(s)	38, 41, 86, 118, 1746, 1986, 2058, 2447
BseSI	GKGCMC	1 cut(s)	1354
BseXI	GCAGC	5 cut(s)	365, 528, 696, 957, 2249
BseYI	CCCAGC	2 cut(s)	113, 941
BsgI	GTGCAG	3 cut(s)	127, 1359, 2464
BshFI	GGCC	4 cut(s)	589, 647, 946, 2517
BshNI	GGYRCC	4 cut(s)	296, 662, 805, 996
BsiHKAI	GWGCWC	5 cut(s)	261, 462, 1334, 1354, 2553
BsiHKCI	CYCGRG	1 cut(s)	98
BslFI	GGGAC	7 cut(s)	164, 1129, 1274, 1333, 1786, 2221, 2487
BslI	CCNNNNNNNGG	7 cut(s)	120, 942, 1316, 1334, 1861, 2431, 2513
BsmAI	GTCTC	8 cut(s)	1023, 1398, 1912, 2186, 2352, 2362, 2429, 2497
BsmBI	CGTCTC	2 cut(s)	1023, 1398
BsmFI	GGGAC	7 cut(s)	164, 1129, 1274, 1333, 1786, 2221, 2487
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	4 cut(s)	589, 647, 946, 2517
Bso31I	GGTCTC	3 cut(s)	2352, 2362, 2497
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	5 cut(s)	261, 462, 1334, 1354, 2553
Bsp143I	GATC	7 cut(s)	430, 611, 735, 769, 952, 1674, 2671
Bsp1720I	GCTNAGC	2 cut(s)	202, 2065
BspACI	CCGC	9 cut(s)	63, 66, 78, 117, 132, 1041, 1226, 2144, 2471
BspANI	GGCC	4 cut(s)	589, 647, 946, 2517
BspCNI	CTCAG	4 cut(s)	448, 1006, 1084, 1231
BspLI	GGNNCC	9 cut(s)	6, 298, 664, 807, 873, 892, 998, 1188, 2538
BspMI	ACCTGC	2 cut(s)	485, 1135
BspPI	GGATC	4 cut(s)	619, 730, 947, 1669
BspT107I	GGYRCC	4 cut(s)	296, 662, 805, 996
BspTNI	GGTCTC	3 cut(s)	2352, 2362, 2497
BsrDI	GCAATG	1 cut(s)	758
BsrFI	RCCGGY	4 cut(s)	395, 808, 1195, 2243
BsrI	ACTGG	8 cut(s)	466, 589, 664, 733, 802, 1030, 1578, 2558
BssAI	RCCGGY	4 cut(s)	395, 808, 1195, 2243
BssECI	CCNNGG	4 cut(s)	147, 373, 440, 894
BssMI	GATC	7 cut(s)	430, 611, 735, 769, 952, 1674, 2671
BssNI	GRCGYC	3 cut(s)	75, 156, 297
BssSI	CACGAG	1 cut(s)	2487
BssT1I	CCWWGG	2 cut(s)	440, 894
Bst2BI	CACGAG	1 cut(s)	2487
Bst2UI	CCWGG	4 cut(s)	148, 479, 1359, 1380
Bst4CI	ACNGT	4 cut(s)	667, 1087, 1409, 2591
Bst6I	CTCTTC	3 cut(s)	35, 492, 1522
BstACI	GRCGYC	3 cut(s)	75, 156, 297
BstAPI	GCANNNNNTGC	1 cut(s)	1847
BstC8I	GCNNGC	6 cut(s)	401, 810, 1039, 1224, 2469, 2640
BstDEI	CTNAG	9 cut(s)	202, 456, 1014, 1071, 1218, 1685, 1818, 1860, 2065
BstEII	GGTNACC	1 cut(s)	1634
BstENI	CCTNNNNNAGG	1 cut(s)	1859
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	7 cut(s)	433, 614, 738, 772, 955, 1677, 2674
BstMAI	GTCTC	8 cut(s)	1023, 1398, 1912, 2186, 2352, 2362, 2429, 2497
BstMBI	GATC	7 cut(s)	430, 611, 735, 769, 952, 1674, 2671
BstMWI	GCNNNNNNNGC	9 cut(s)	74, 162, 387, 396, 443, 1847, 2141, 2468, 2635
BstNI	CCWGG	4 cut(s)	148, 479, 1359, 1380
BstNSI	RCATGY	4 cut(s)	511, 1041, 1942, 2605
BstPI	GGTNACC	1 cut(s)	1634
BstSCI	CCNGG	9 cut(s)	146, 373, 477, 738, 999, 1357, 1378, 1423, 2717
BstSFI	CTRYAG	1 cut(s)	2680
BstSLI	GKGCMC	1 cut(s)	1354
BstV1I	GCAGC	5 cut(s)	365, 528, 696, 957, 2249
BstV2I	GAAGAC	1 cut(s)	822
BstX2I	RGATCY	1 cut(s)	611
BstXI	CCANNNNNNTGG	1 cut(s)	1631
BstYI	RGATCY	1 cut(s)	611
BsuRI	GGCC	4 cut(s)	589, 647, 946, 2517
BtgZI	GCGATG	1 cut(s)	2136
BtsI	GCAGTG	5 cut(s)	936, 1636, 1815, 2476, 2631
BveI	ACCTGC	2 cut(s)	485, 1135
Cac8I	GCNNGC	6 cut(s)	401, 810, 1039, 1224, 2469, 2640
CaiI	CAGNNNCTG	1 cut(s)	120
CfoI	GCGC	1 cut(s)	299
Cfr10I	RCCGGY	4 cut(s)	395, 808, 1195, 2243
CseI	GACGC	3 cut(s)	83, 145, 1580
CsiI	ACCWGGT	1 cut(s)	1378
Csp6I	GTAC	9 cut(s)	663, 732, 756, 997, 1594, 1815, 1930, 1936, 2652
CspCI	CAANNNNNGTGG	4 cut(s)	2028, 2063, 2244, 2279
CviQI	GTAC	9 cut(s)	663, 732, 756, 997, 1594, 1815, 1930, 1936, 2652
DdeI	CTNAG	9 cut(s)	202, 456, 1014, 1071, 1218, 1685, 1818, 1860, 2065
DinI	GGCGCC	1 cut(s)	298
DpnI	GATC	7 cut(s)	432, 613, 737, 771, 954, 1676, 2673
DpnII	GATC	7 cut(s)	430, 611, 735, 769, 952, 1674, 2671
DraIII	CACNNNGTG	1 cut(s)	1382
DrdI	GACNNNNNNGTC	2 cut(s)	80, 826
DseDI	GACNNNNNNGTC	2 cut(s)	80, 826
Eam1104I	CTCTTC	3 cut(s)	35, 492, 1522
EarI	CTCTTC	3 cut(s)	35, 492, 1522
Ecl136II	GAGCTC	3 cut(s)	259, 460, 1332
Eco130I	CCWWGG	2 cut(s)	440, 894
Eco24I	GRGCYC	3 cut(s)	261, 462, 1334
Eco31I	GGTCTC	3 cut(s)	2352, 2362, 2497
Eco47I	GGWCC	7 cut(s)	5, 123, 742, 872, 891, 1187, 2537
Eco53kI	GAGCTC	3 cut(s)	259, 460, 1332
Eco57I	CTGAAG	3 cut(s)	851, 959, 1398
Eco88I	CYCGRG	1 cut(s)	98
Eco91I	GGTNACC	1 cut(s)	1634
EcoICRI	GAGCTC	3 cut(s)	259, 460, 1332
EcoNI	CCTNNNNNAGG	1 cut(s)	1859
EcoO109I	RGGNCCY	3 cut(s)	5, 872, 2537
EcoO65I	GGTNACC	1 cut(s)	1634
EcoRII	CCWGG	4 cut(s)	146, 477, 1357, 1378
EcoT14I	CCWWGG	2 cut(s)	440, 894
EcoT22I	ATGCAT	3 cut(s)	1039, 2278, 2607
EcoT38I	GRGCYC	3 cut(s)	261, 462, 1334
EgeI	GGCGCC	1 cut(s)	298
EheI	GGCGCC	1 cut(s)	298
ErhI	CCWWGG	2 cut(s)	440, 894
Esp3I	CGTCTC	2 cut(s)	1023, 1398
FalI	AAGNNNNNCTT	2 cut(s)	2689, 2721
FaqI	GGGAC	7 cut(s)	164, 1129, 1274, 1333, 1786, 2221, 2487
FauI	CCCGC	1 cut(s)	2464
FauNDI	CATATG	1 cut(s)	2607
FblI	GTMKAC	2 cut(s)	339, 470
Fnu4HI	GCNGC	8 cut(s)	66, 78, 118, 379, 517, 710, 971, 2238
FriOI	GRGCYC	3 cut(s)	261, 462, 1334
Fsp4HI	GCNGC	8 cut(s)	66, 78, 118, 379, 517, 710, 971, 2238
FspBI	CTAG	3 cut(s)	1281, 1299, 2321
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	8 cut(s)	66, 78, 118, 379, 517, 710, 971, 2238
GsaI	CCCAGC	2 cut(s)	117, 945
GsuI	CTGGAG	3 cut(s)	902, 1047, 1356
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	4 cut(s)	589, 647, 946, 2517
HgaI	GACGC	3 cut(s)	83, 145, 1580
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	3 cut(s)	75, 156, 297
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	6 cut(s)	657, 819, 1293, 1956, 2383, 2527
HindII	GTYRAC	6 cut(s)	657, 819, 1293, 1956, 2383, 2527
HindIII	AAGCTT	1 cut(s)	863
HpaI	GTTAAC	1 cut(s)	657
Hpy188I	TCNGA	8 cut(s)	172, 386, 457, 769, 1074, 1191, 1269, 2502
Hpy99I	CGWCG	5 cut(s)	74, 77, 817, 2177, 2414
HpyCH4III	ACNGT	4 cut(s)	667, 1087, 1409, 2591
HpyCH4IV	ACGT	2 cut(s)	815, 1952
HpyF10VI	GCNNNNNNNGC	9 cut(s)	74, 162, 387, 396, 443, 1847, 2141, 2468, 2635
HpyF3I	CTNAG	9 cut(s)	202, 456, 1014, 1071, 1218, 1685, 1818, 1860, 2065
HpySE526I	ACGT	2 cut(s)	815, 1952
Hsp92I	GRCGYC	3 cut(s)	75, 156, 297
HspAI	GCGC	1 cut(s)	297
KasI	GGCGCC	1 cut(s)	296
KpnI	GGTACC	2 cut(s)	666, 1000
KroI	GCCGGC	1 cut(s)	808
KroNI	GCCGGC	1 cut(s)	810
KspAI	GTTAAC	1 cut(s)	657
Kzo9I	GATC	7 cut(s)	430, 611, 735, 769, 952, 1674, 2671
LmnI	GCTCC	2 cut(s)	99, 1050
Lsp1109I	GCAGC	5 cut(s)	365, 528, 696, 957, 2249
LweI	GCATC	6 cut(s)	143, 1024, 1057, 1114, 1225, 2709
MabI	ACCWGGT	1 cut(s)	1378
MaeI	CTAG	3 cut(s)	1281, 1299, 2321
MaeII	ACGT	2 cut(s)	815, 1952
MalI	GATC	7 cut(s)	432, 613, 737, 771, 954, 1676, 2673
MboI	GATC	7 cut(s)	430, 611, 735, 769, 952, 1674, 2671
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	5 cut(s)	261, 462, 1334, 1354, 2553
MluCI	AATT	9 cut(s)	1004, 1249, 1271, 1551, 1557, 1702, 1760, 1779, 1845
Mly113I	GGCGCC	1 cut(s)	297
MlyI	GAGTC	5 cut(s)	161, 195, 1025, 2382, 2723
MmeI	TCCRAC	4 cut(s)	234, 348, 705, 1428
Mph1103I	ATGCAT	3 cut(s)	1039, 2278, 2607
MroNI	GCCGGC	1 cut(s)	808
MroXI	GAANNNNTTC	2 cut(s)	722, 2182
MseI	TTAA	6 cut(s)	636, 656, 1788, 1905, 2160, 2598
MslI	CAYNNNNRTG	5 cut(s)	506, 1110, 1469, 2600, 2606
MspA1I	CMGCKG	2 cut(s)	117, 1222
MspR9I	CCNGG	9 cut(s)	148, 375, 479, 740, 1001, 1359, 1380, 1425, 2719
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	4 cut(s)	148, 479, 1359, 1380
MwoI	GCNNNNNNNGC	9 cut(s)	74, 162, 387, 396, 443, 1847, 2141, 2468, 2635
NaeI	GCCGGC	1 cut(s)	810
NarI	GGCGCC	1 cut(s)	297
NciI	CCSGG	5 cut(s)	375, 740, 1001, 1425, 2719
NdeI	CATATG	1 cut(s)	2607
NdeII	GATC	7 cut(s)	430, 611, 735, 769, 952, 1674, 2671
NgoMIV	GCCGGC	1 cut(s)	808
NlaIV	GGNNCC	9 cut(s)	6, 298, 664, 807, 873, 892, 998, 1188, 2538
NmeAIII	GCCGAG	2 cut(s)	1353, 2488
NsiI	ATGCAT	3 cut(s)	1039, 2278, 2607
NspI	RCATGY	4 cut(s)	511, 1041, 1942, 2605
PaeI	GCATGC	1 cut(s)	1041
PaeR7I	CTCGAG	1 cut(s)	98
PaqCI	CACCTGC	1 cut(s)	1135
PciI	ACATGT	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	3 cut(s)	78, 252, 821
PctI	GAATGC	1 cut(s)	519
PdiI	GCCGGC	1 cut(s)	810
PdmI	GAANNNNTTC	2 cut(s)	722, 2182
PfeI	GAWTC	7 cut(s)	173, 619, 697, 718, 1090, 1799, 2738
PflFI	GACNNNGTC	2 cut(s)	155, 788
PflMI	CCANNNNNTGG	2 cut(s)	120, 1316
PfoI	TCCNGGA	1 cut(s)	738
PkrI	GCNGC	8 cut(s)	67, 79, 119, 380, 518, 711, 972, 2239
PleI	GAGTC	5 cut(s)	161, 194, 1024, 2381, 2723
PluTI	GGCGCC	1 cut(s)	300
PpsI	GAGTC	5 cut(s)	161, 194, 1024, 2381, 2723
PpuMI	RGGWCCY	3 cut(s)	5, 872, 2537
PscI	ACATGT	1 cut(s)	507
PshBI	ATTAAT	1 cut(s)	1905
PsiI	TTATAA	1 cut(s)	1752
Psp124BI	GAGCTC	3 cut(s)	261, 462, 1334
Psp1406I	AACGTT	1 cut(s)	1952
Psp5II	RGGWCCY	3 cut(s)	5, 872, 2537
Psp6I	CCWGG	4 cut(s)	146, 477, 1357, 1378
PspEI	GGTNACC	1 cut(s)	1634
PspFI	CCCAGC	2 cut(s)	113, 941
PspGI	CCWGG	4 cut(s)	146, 477, 1357, 1378
PspN4I	GGNNCC	9 cut(s)	6, 298, 664, 807, 873, 892, 998, 1188, 2538
PspPPI	RGGWCCY	3 cut(s)	5, 872, 2537
PstNI	CAGNNNCTG	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	611
PsyI	GACNNNGTC	2 cut(s)	155, 788
PvuII	CAGCTG	1 cut(s)	1222
RsaI	GTAC	9 cut(s)	664, 733, 757, 998, 1595, 1816, 1931, 1937, 2653
RsaNI	GTAC	9 cut(s)	663, 732, 756, 997, 1594, 1815, 1930, 1936, 2652
RseI	CAYNNNNRTG	5 cut(s)	506, 1110, 1469, 2600, 2606
SacI	GAGCTC	3 cut(s)	261, 462, 1334
SaqAI	TTAA	6 cut(s)	636, 656, 1788, 1905, 2160, 2598
SatI	GCNGC	8 cut(s)	66, 78, 118, 379, 517, 710, 971, 2238
Sau3AI	GATC	7 cut(s)	430, 611, 735, 769, 952, 1674, 2671
SchI	GAGTC	5 cut(s)	161, 195, 1025, 2382, 2723
ScrFI	CCNGG	9 cut(s)	148, 375, 479, 740, 1001, 1359, 1380, 1425, 2719
SduI	GDGCHC	5 cut(s)	261, 462, 1334, 1354, 2553
SexAI	ACCWGGT	1 cut(s)	1378
SfaNI	GCATC	6 cut(s)	143, 1024, 1057, 1114, 1225, 2709
SfcI	CTRYAG	1 cut(s)	2680
SfoI	GGCGCC	1 cut(s)	298
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	7 cut(s)	5, 123, 742, 872, 891, 1187, 2537
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	5 cut(s)	506, 1110, 1469, 2600, 2606
SmlI	CTYRAG	2 cut(s)	98, 409
SmoI	CTYRAG	2 cut(s)	98, 409
SpeI	ACTAGT	1 cut(s)	1298
SphI	GCATGC	1 cut(s)	1041
Sse9I	AATT	9 cut(s)	1004, 1249, 1271, 1551, 1557, 1702, 1760, 1779, 1845
SsiI	CCGC	9 cut(s)	63, 66, 78, 117, 132, 1041, 1226, 2144, 2471
SspDI	GGCGCC	1 cut(s)	296
SspMI	CTAG	3 cut(s)	1281, 1299, 2321
SstI	GAGCTC	3 cut(s)	261, 462, 1334
StyD4I	CCNGG	9 cut(s)	146, 373, 477, 738, 999, 1357, 1378, 1423, 2717
StyI	CCWWGG	2 cut(s)	440, 894
TaaI	ACNGT	4 cut(s)	667, 1087, 1409, 2591
TaiI	ACGT	2 cut(s)	818, 1955
TaqI	TCGA	6 cut(s)	99, 345, 429, 1673, 2311, 2409
TasI	AATT	9 cut(s)	1004, 1249, 1271, 1551, 1557, 1702, 1760, 1779, 1845
TatI	WGTACW	2 cut(s)	755, 1935
TauI	GCSGC	3 cut(s)	68, 80, 120
TfiI	GAWTC	7 cut(s)	173, 619, 697, 718, 1090, 1799, 2738
Tru1I	TTAA	6 cut(s)	636, 656, 1788, 1905, 2160, 2598
Tru9I	TTAA	6 cut(s)	636, 656, 1788, 1905, 2160, 2598
TseI	GCWGC	5 cut(s)	378, 516, 709, 970, 2237
TspDTI	ATGAA	9 cut(s)	1453, 1477, 1631, 2071, 2355, 2586, 2598, 2624, 2661
TspGWI	ACGGA	2 cut(s)	1380, 2190
Tth111I	GACNNNGTC	2 cut(s)	155, 788
Van91I	CCANNNNNTGG	2 cut(s)	120, 1316
VneI	GTGCAC	1 cut(s)	1350
VpaK11BI	GGWCC	7 cut(s)	5, 123, 742, 872, 891, 1187, 2537
VspI	ATTAAT	1 cut(s)	1905
XagI	CCTNNNNNAGG	1 cut(s)	1859
XapI	RAATTY	1 cut(s)	1271
XbaI	TCTAGA	1 cut(s)	2320
XceI	RCATGY	4 cut(s)	511, 1041, 1942, 2605
XhoI	CTCGAG	1 cut(s)	98
XmiI	GTMKAC	2 cut(s)	339, 470
XmnI	GAANNNNTTC	2 cut(s)	722, 2182
XspI	CTAG	3 cut(s)	1281, 1299, 2321
Zsp2I	ATGCAT	3 cut(s)	1039, 2278, 2607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.