Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006862

Physical Location & Seq

Genomic Coordinates Reverse (-)

35111178 .. 35113570

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG177100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2280 bp

ATGGGTCCTCTGAAAACCCTACAAGCCCTCTTCCTCTTTCTACCCCTCCTCCTCATCTTCACCGCCGCCGACGACGCCGCCGTCATGTCCAAGCTCCTCGAGAACCTCAAACCCAGCGGCTGGTCCTCCTCCGCATCCTACTGCACCTGGGACGGCGTCAAATGCGACTCCGATACTTCCAAACGAGTCACCTCCATCAGCTTAGCCTCCAGCTCCCTCTCCGGCTCTCTCCCTTCAAATCTCAACGAACTCACCGAGCTCACCACTCTCTCTCTCCAAAGCAACGCTCTCTACGGCGCCTTACCTTCCCTCGCCAACCTCTCCAACCTCCAAGAAGTCTACCTCGACACCAATAACTTCACTTCCATTCCCGCCGGCTGCTTCGGAGGCTTGACCGGCTTGCAGACCTTGAGCATGAGCAACAATGTCGATCTTGCCCCTTGGGCGTTCCCATCTGAGCTCATCCAGTCGACCAGCCTGGTCACTCTTCAAGCAGGTAGCACCAACATGTATGGCGGCATTCCTGATATTTTCGGCTCTTTTGCAAACTTGCAAAATGTGAGATTGTCTTACAACAATCTTACCGGGCCTCTGCCCAAATCATTTTCTGGATCTGGGATTCAAAACCTCTGGATTAACAATCAGACCGTTGGGTTATCTGGTACCGTTGAGGTGCTGTCCAACATGACTTCGTTGATTCAAGCGTGGCTGCATAAGAATCAGTTCACTGGTACGATCCCGGACCTTTCGCAATGTATTGCTCTCTCTGATCTTCTGCTTCGTGACAATGTCTTTACTGGGATGGTGCCGGCGACGTTGACGGCGTTGTCTTCTTTGCAAAATGTTTCTTTGGACAACAATAAGCTTCAGGGTCCTATACCGGAGTTGGGGTCCAAGGTGAAGCTCACTTTTGATGGTAATAGCTTTTGCAAAACCACTGCTGGGCCTTGTGATCCACAGGTCACTACGCTGCTTCAGGTTGCAGGGGCTTTCGGGTACCCGGAATTATTGGCTGAGTCTTGGACAGGAGACGATGCATGCGGAGGGTGGAGCTTCGTTATTTGTGATGCTCAGAAGGTAGTTAATACAGTGAATCTGGACAACAAGCATCTCAATGGGACTATTTCACCTGCCTTTGCCAACCTCACATCGTTGAAAACTTTGGTGCTGAAAAACAACAACTTGACGGGTCCGATACCGGCTCGCCTGACAACATTACCTCAGCTGGCGGTTTTTGATGCTTCCAATAACAATTTATATGGGGACATTCCAAAATTTTCTTCTGGGGTGAAGTTGACTACTAGCGGTAATCCATTGATTGGGACTACGCCGAGCTCTGGAGGTGGAGGGAGTCCGTCTCCATCATCCAACGGTTCTTCAGTGTCGCCCGGTATGATTGCTGGTATAGTTATTGCTGTTGCTATTTTCATTGGAGTGTTGTTGTTTGTATTCCTCAAATGTTATTTGAGTAAAAGGCATAGGAAGTTTGGAAGAGTGGATAATACGCTGAATGGAATTGAAATTGCTAAGGGCAACGTGACCAGTTGTGCAAATGGGTACAATGGAGTTGCAAATGAGTTGCATAGCCAGAGCAGGGGTGACCTTCATGTTTCTGTGGGTGGAAATGTCGCCATTTCAATCCTAGTTCTTAGACAAGTGACAAACAATTTTAGTGAGGATAATATATTGGGTAGAGGAGGATTTGGCGTTGTTTATAAAGGTGAGCTACATGATGGGACTAAAATTGCTGTGAAAAAGATGGAATCTGTGGCAGTGGGTACTAAGGGACTGATGAATGGGTTTCAAGCAGAAATTTCAGTCCTCACTAGGGTTAGGCATAGGCATTTGGTTGCTCTGTTAGGATATTGCATTAATGGTAATGAGAGACTTCTAGTGTACGAGTACATGGCACAAGGAACGTTGACACAACATTTGTTTGATTGGCGGGAGAATGGGGTAACTCCTCTTACTTGGAAGCAGAGAGTGACAATAGCTTTGGATGTGGCAAGAGGATTGGAATATCTACACAGCTTAGCTCAACAAAGTTTCATTCACAGAGATTTGAAACCTTCAAATATACTTCTTGGGGATGCCATGAGGGCGAAGGTTGCGGACTTTGGTTTGGTTAAAAACGCCCCCGACGGAAAGTATTCGGTTGAGACAAGAGTGGCAGGGACATTCGGGTATATTGCACCAGAATATGCAGGTAATAGAAACAATTTGATTTCTAGCTTTTCATCATTTCATGTTGAAAGAGTCGTGGCATTTGTTGAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

759

Amino Acids

81.01

Weight (kDa)

7.16

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	108 - 142	2e-06	Leucine rich repeat
Pkinase	PF00069	558 - 737	5.3e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	560 - 738	2.1e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23750
fragaria_vesca	FvH4_4g13110 FvH4_4g13110
malus_domestica	MD04G1019100.v1.1
prunus_persica	Prupe.1G168400_v2.0.a1 Prupe.1G168500_v2.0.a1 Prupe.1G168500_v2.0.a1
pyrus_communis	pycom04g01540 pycom13g29180
rosa_chinensis	RchiOBHm_Chr4g0412891 RchiOBHm_Chr4g0413671
rosa_laevigata	RLG00000008202 RLG00000008250
rosa_multiflora	Rmu_sc0004133.1_g000014 Rmu_sc0005621.1_g000017 Rmu_sc0012279.1_g000002
rosa_roxburghii	Rroxscaffold_5G00357130
rosa_rugosa	Rorug04G0117300
rosa_samantha	Rh4AG176200 Rh4AG181600 Rh4BG176600 Rh4CG187200 Rh4DG173400 Rh4DG177100
rosa_wichuraiana	Rw4G014790 Rw4G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1716
AarI	CACCTGC	1 cut(s)	1138
AasI	GACNNNNNNGTC	2 cut(s)	80, 826
Acc36I	ACCTGC	3 cut(s)	485, 1138, 2195
Acc65I	GGTACC	2 cut(s)	662, 996
AccB1I	GGYRCC	4 cut(s)	296, 662, 805, 996
AccB7I	CCANNNNNTGG	2 cut(s)	120, 1319
AccI	GTMKAC	2 cut(s)	339, 470
AclI	AACGTT	1 cut(s)	1919
AclWI	GGATC	3 cut(s)	619, 730, 947
AcsI	RAATTY	2 cut(s)	1274, 1812
AcuI	CTGAAG	3 cut(s)	851, 959, 1362
AcyI	GRCGYC	3 cut(s)	75, 156, 297
AfaI	GTAC	7 cut(s)	664, 733, 998, 1559, 1780, 1898, 1904
AfiI	CCNNNNNNNGG	7 cut(s)	120, 887, 942, 1319, 1337, 1594, 1828
AflIII	ACRYGT	1 cut(s)	507
AjnI	CCWGG	2 cut(s)	146, 477
AjuI	GAANNNNNNNTTGG	2 cut(s)	1264, 1296
Alw21I	GWGCWC	3 cut(s)	261, 462, 1337
Alw26I	GTCTC	4 cut(s)	1023, 1362, 1879, 2153
AlwI	GGATC	3 cut(s)	619, 730, 947
AlwNI	CAGNNNCTG	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	587, 944
ApeKI	GCWGC	3 cut(s)	378, 709, 970
ApoI	RAATTY	2 cut(s)	1274, 1812
ArsI	GACNNNNNNTTYG	4 cut(s)	1915, 1947, 1978, 2010
AseI	ATTAAT	1 cut(s)	1872
Asp700I	GAANNNNTTC	2 cut(s)	722, 2149
Asp718I	GGTACC	2 cut(s)	662, 996
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	8 cut(s)	5, 123, 587, 742, 872, 891, 944, 1190
AsuC2I	CCSGG	4 cut(s)	586, 740, 1001, 1389
AsuHPI	GGTGA	9 cut(s)	52, 181, 244, 253, 910, 1119, 1300, 1610, 1733
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	6 cut(s)	5, 123, 742, 872, 891, 1190
BanI	GGYRCC	4 cut(s)	296, 662, 805, 996
BanII	GRGCYC	3 cut(s)	261, 462, 1337
BbsI	GAAGAC	1 cut(s)	822
Bbv12I	GWGCWC	3 cut(s)	261, 462, 1337
BbvCI	CCTCAGC	1 cut(s)	1221
BbvI	GCAGC	3 cut(s)	365, 696, 957
BccI	CCATC	7 cut(s)	203, 460, 796, 908, 1369, 1727, 1753
BceAI	ACGGC	4 cut(s)	65, 169, 310, 837
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BciT130I	CCWGG	2 cut(s)	148, 479
BcnI	CCSGG	4 cut(s)	586, 740, 1001, 1389
BcoDI	GTCTC	4 cut(s)	1023, 1362, 1879, 2153
BfaI	CTAG	5 cut(s)	1302, 1643, 1827, 1892, 2229
BfoI	RGCGCY	1 cut(s)	300
BfuAI	ACCTGC	3 cut(s)	485, 1138, 2195
BglI	GCCNNNNNGGC	2 cut(s)	443, 2099
BisI	GCNGC	7 cut(s)	66, 78, 118, 379, 517, 710, 971
BlpI	GCTNAGC	2 cut(s)	202, 2032
BlsI	GCNGC	7 cut(s)	67, 79, 119, 380, 518, 711, 972
Bme1390I	CCNGG	6 cut(s)	148, 479, 586, 740, 1001, 1389
Bme18I	GGWCC	6 cut(s)	5, 123, 742, 872, 891, 1190
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	8 cut(s)	5, 123, 587, 742, 872, 891, 944, 1190
BmiI	GGNNCC	8 cut(s)	6, 298, 664, 807, 873, 892, 998, 1191
BmrFI	CCNGG	6 cut(s)	148, 479, 586, 740, 1001, 1389
BmrI	ACTGGG	1 cut(s)	807
BmsI	GCATC	6 cut(s)	143, 1024, 1057, 1117, 1228, 2080
BmuI	ACTGGG	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	822
BplI	GAGNNNNNCTC	2 cut(s)	1342, 1374
BpmI	CTGGAG	2 cut(s)	193, 1359
Bpu10I	CCTNAGC	2 cut(s)	1221, 1527
Bpu1102I	GCTNAGC	2 cut(s)	202, 2032
BpuEI	CTTGAG	1 cut(s)	430
BpuMI	CCSGG	4 cut(s)	586, 740, 1001, 1389
BsaHI	GRCGYC	3 cut(s)	75, 156, 297
BsaJI	CCNNGG	3 cut(s)	147, 440, 894
BsaWI	WCCGGW	1 cut(s)	880
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 875, 905
Bsc4I	CCNNNNNNNGG	7 cut(s)	120, 887, 942, 1319, 1337, 1594, 1828
Bse118I	RCCGGY	4 cut(s)	374, 395, 808, 1198
Bse1I	ACTGG	4 cut(s)	466, 733, 802, 1542
Bse3DI	GCAATG	1 cut(s)	758
BseBI	CCWGG	2 cut(s)	148, 479
BseDI	CCNNGG	3 cut(s)	147, 440, 894
BseGI	GGATG	6 cut(s)	134, 462, 807, 1364, 2005, 2095
BseLI	CCNNNNNNNGG	7 cut(s)	120, 887, 942, 1319, 1337, 1594, 1828
BseMI	GCAATG	1 cut(s)	758
BseMII	CTCAG	4 cut(s)	447, 1005, 1085, 1235
BseNI	ACTGG	4 cut(s)	466, 733, 802, 1542
BseRI	GAGGAG	6 cut(s)	38, 41, 86, 118, 1710, 1953
BseXI	GCAGC	3 cut(s)	365, 696, 957
BseYI	CCCAGC	2 cut(s)	113, 941
BsgI	GTGCAG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	589, 946
BshNI	GGYRCC	4 cut(s)	296, 662, 805, 996
BsiHKAI	GWGCWC	3 cut(s)	261, 462, 1337
BsiHKCI	CYCGRG	1 cut(s)	98
BslFI	GGGAC	7 cut(s)	164, 1132, 1277, 1336, 1750, 1800, 2188
BslI	CCNNNNNNNGG	7 cut(s)	120, 887, 942, 1319, 1337, 1594, 1828
BsmAI	GTCTC	4 cut(s)	1023, 1362, 1879, 2153
BsmBI	CGTCTC	2 cut(s)	1023, 1362
BsmFI	GGGAC	7 cut(s)	164, 1132, 1277, 1336, 1750, 1800, 2188
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	2 cut(s)	589, 946
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	261, 462, 1337
Bsp143I	GATC	5 cut(s)	430, 611, 735, 769, 952
Bsp1720I	GCTNAGC	2 cut(s)	202, 2032
BspANI	GGCC	2 cut(s)	589, 946
BspCNI	CTCAG	4 cut(s)	448, 1006, 1084, 1234
BspLI	GGNNCC	8 cut(s)	6, 298, 664, 807, 873, 892, 998, 1191
BspMI	ACCTGC	3 cut(s)	485, 1138, 2195
BspPI	GGATC	3 cut(s)	619, 730, 947
BspT107I	GGYRCC	4 cut(s)	296, 662, 805, 996
BsrDI	GCAATG	1 cut(s)	758
BsrFI	RCCGGY	4 cut(s)	374, 395, 808, 1198
BsrI	ACTGG	4 cut(s)	466, 733, 802, 1542
BssAI	RCCGGY	4 cut(s)	374, 395, 808, 1198
BssECI	CCNNGG	3 cut(s)	147, 440, 894
BssMI	GATC	5 cut(s)	430, 611, 735, 769, 952
BssNI	GRCGYC	3 cut(s)	75, 156, 297
BssT1I	CCWWGG	2 cut(s)	440, 894
Bst2UI	CCWGG	2 cut(s)	148, 479
Bst4CI	ACNGT	4 cut(s)	649, 667, 1090, 1373
Bst6I	CTCTTC	3 cut(s)	35, 492, 1486
BstACI	GRCGYC	3 cut(s)	75, 156, 297
BstC8I	GCNNGC	6 cut(s)	376, 401, 810, 1039, 1204, 1227
BstDEI	CTNAG	9 cut(s)	202, 456, 1014, 1071, 1221, 1527, 1649, 1782, 2032
BstEII	GGTNACC	1 cut(s)	1598
BstF5I	GGATG	6 cut(s)	134, 462, 807, 1364, 2005, 2095
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	5 cut(s)	433, 614, 738, 772, 955
BstMAI	GTCTC	4 cut(s)	1023, 1362, 1879, 2153
BstMBI	GATC	5 cut(s)	430, 611, 735, 769, 952
BstMWI	GCNNNNNNNGC	7 cut(s)	74, 162, 387, 396, 443, 2099, 2108
BstNI	CCWGG	2 cut(s)	148, 479
BstNSI	RCATGY	2 cut(s)	511, 1041
BstPI	GGTNACC	1 cut(s)	1598
BstSCI	CCNGG	6 cut(s)	146, 477, 584, 738, 999, 1387
BstV1I	GCAGC	3 cut(s)	365, 696, 957
BstV2I	GAAGAC	1 cut(s)	822
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
BsuRI	GGCC	2 cut(s)	589, 946
BtsCI	GGATG	6 cut(s)	134, 462, 807, 1364, 2005, 2095
BtsI	GCAGTG	2 cut(s)	936, 1779
BtsIMutI	CAGTG	5 cut(s)	726, 936, 1095, 1386, 1779
BveI	ACCTGC	3 cut(s)	485, 1138, 2195
Cac8I	GCNNGC	6 cut(s)	376, 401, 810, 1039, 1204, 1227
CaiI	CAGNNNCTG	1 cut(s)	120
CfoI	GCGC	1 cut(s)	299
Cfr10I	RCCGGY	4 cut(s)	374, 395, 808, 1198
Cfr13I	GGNCC	8 cut(s)	5, 123, 587, 742, 872, 891, 944, 1190
CseI	GACGC	2 cut(s)	83, 145
Csp6I	GTAC	7 cut(s)	663, 732, 997, 1558, 1779, 1897, 1903
CviQI	GTAC	7 cut(s)	663, 732, 997, 1558, 1779, 1897, 1903
DdeI	CTNAG	9 cut(s)	202, 456, 1014, 1071, 1221, 1527, 1649, 1782, 2032
DinI	GGCGCC	1 cut(s)	298
DpnI	GATC	5 cut(s)	432, 613, 737, 771, 954
DpnII	GATC	5 cut(s)	430, 611, 735, 769, 952
DrdI	GACNNNNNNGTC	2 cut(s)	80, 826
DseDI	GACNNNNNNGTC	2 cut(s)	80, 826
Eam1104I	CTCTTC	3 cut(s)	35, 492, 1486
EarI	CTCTTC	3 cut(s)	35, 492, 1486
Ecl136II	GAGCTC	3 cut(s)	259, 460, 1335
Eco130I	CCWWGG	2 cut(s)	440, 894
Eco24I	GRGCYC	3 cut(s)	261, 462, 1337
Eco47I	GGWCC	6 cut(s)	5, 123, 742, 872, 891, 1190
Eco53kI	GAGCTC	3 cut(s)	259, 460, 1335
Eco57I	CTGAAG	3 cut(s)	851, 959, 1362
Eco88I	CYCGRG	1 cut(s)	98
Eco91I	GGTNACC	1 cut(s)	1598
EcoICRI	GAGCTC	3 cut(s)	259, 460, 1335
EcoO109I	RGGNCCY	2 cut(s)	5, 872
EcoO65I	GGTNACC	1 cut(s)	1598
EcoRII	CCWGG	2 cut(s)	146, 477
EcoT14I	CCWWGG	2 cut(s)	440, 894
EcoT22I	ATGCAT	1 cut(s)	1039
EcoT38I	GRGCYC	3 cut(s)	261, 462, 1337
EgeI	GGCGCC	1 cut(s)	298
EheI	GGCGCC	1 cut(s)	298
ErhI	CCWWGG	2 cut(s)	440, 894
Esp3I	CGTCTC	2 cut(s)	1023, 1362
FaqI	GGGAC	7 cut(s)	164, 1132, 1277, 1336, 1750, 1800, 2188
FauI	CCCGC	2 cut(s)	379, 1938
FblI	GTMKAC	2 cut(s)	339, 470
Fnu4HI	GCNGC	7 cut(s)	66, 78, 118, 379, 517, 710, 971
FokI	GGATG	6 cut(s)	121, 449, 814, 1351, 2012, 2102
FriOI	GRGCYC	3 cut(s)	261, 462, 1337
Fsp4HI	GCNGC	7 cut(s)	66, 78, 118, 379, 517, 710, 971
FspBI	CTAG	5 cut(s)	1302, 1643, 1827, 1892, 2229
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	7 cut(s)	66, 78, 118, 379, 517, 710, 971
GsaI	CCCAGC	2 cut(s)	117, 945
GsuI	CTGGAG	2 cut(s)	193, 1359
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	589, 946
HgaI	GACGC	2 cut(s)	83, 145
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	3 cut(s)	75, 156, 297
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	4 cut(s)	471, 819, 1296, 1923
HindII	GTYRAC	4 cut(s)	471, 819, 1296, 1923
HindIII	AAGCTT	1 cut(s)	863
HphI	GGTGA	9 cut(s)	52, 181, 244, 253, 910, 1119, 1300, 1610, 1733
Hpy166II	GTNNAC	7 cut(s)	340, 471, 726, 819, 1296, 1897, 1923
Hpy188I	TCNGA	8 cut(s)	12, 172, 386, 457, 645, 769, 1074, 1194
Hpy188III	TCNNGA	7 cut(s)	100, 524, 609, 631, 782, 1097, 1338
Hpy8I	GTNNAC	7 cut(s)	340, 471, 726, 819, 1296, 1897, 1923
Hpy99I	CGWCG	4 cut(s)	74, 77, 817, 2144
HpyAV	CCTTC	6 cut(s)	243, 315, 1069, 1613, 2079, 2098
HpyCH4III	ACNGT	4 cut(s)	649, 667, 1090, 1373
HpyCH4IV	ACGT	3 cut(s)	815, 1536, 1919
HpyF10VI	GCNNNNNNNGC	7 cut(s)	74, 162, 387, 396, 443, 2099, 2108
HpyF3I	CTNAG	9 cut(s)	202, 456, 1014, 1071, 1221, 1527, 1649, 1782, 2032
HpySE526I	ACGT	3 cut(s)	815, 1536, 1919
Hsp92I	GRCGYC	3 cut(s)	75, 156, 297
HspAI	GCGC	1 cut(s)	297
KasI	GGCGCC	1 cut(s)	296
KpnI	GGTACC	2 cut(s)	666, 1000
KroI	GCCGGC	2 cut(s)	374, 808
KroNI	GCCGGC	2 cut(s)	376, 810
Kzo9I	GATC	5 cut(s)	430, 611, 735, 769, 952
LmnI	GCTCC	3 cut(s)	99, 218, 1050
Lsp1109I	GCAGC	3 cut(s)	365, 696, 957
LweI	GCATC	6 cut(s)	143, 1024, 1057, 1117, 1228, 2080
MaeI	CTAG	5 cut(s)	1302, 1643, 1827, 1892, 2229
MaeII	ACGT	3 cut(s)	815, 1536, 1919
MaeIII	GTNAC	9 cut(s)	187, 481, 782, 961, 1537, 1598, 1657, 1957, 1984
MalI	GATC	5 cut(s)	432, 613, 737, 771, 954
MboI	GATC	5 cut(s)	430, 611, 735, 769, 952
MboII	GAAGA	8 cut(s)	22, 49, 479, 764, 822, 1272, 1368, 1503
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	3 cut(s)	261, 462, 1337
MluCI	AATT	9 cut(s)	1004, 1252, 1274, 1515, 1521, 1666, 1743, 1812, 2218
Mly113I	GGCGCC	1 cut(s)	297
MlyI	GAGTC	5 cut(s)	161, 195, 1025, 1360, 2265
MmeI	TCCRAC	3 cut(s)	348, 705, 1392
Mph1103I	ATGCAT	1 cut(s)	1039
MroNI	GCCGGC	2 cut(s)	374, 808
MroXI	GAANNNNTTC	2 cut(s)	722, 2149
MseI	TTAA	5 cut(s)	636, 1083, 1872, 2127, 2278
MslI	CAYNNNNRTG	3 cut(s)	506, 1113, 1433
MspA1I	CMGCKG	2 cut(s)	117, 1225
MspR9I	CCNGG	6 cut(s)	148, 479, 586, 740, 1001, 1389
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	2 cut(s)	148, 479
MwoI	GCNNNNNNNGC	7 cut(s)	74, 162, 387, 396, 443, 2099, 2108
NaeI	GCCGGC	2 cut(s)	376, 810
NarI	GGCGCC	1 cut(s)	297
NciI	CCSGG	4 cut(s)	586, 740, 1001, 1389
NdeII	GATC	5 cut(s)	430, 611, 735, 769, 952
NgoMIV	GCCGGC	2 cut(s)	374, 808
NlaIV	GGNNCC	8 cut(s)	6, 298, 664, 807, 873, 892, 998, 1191
NmeAIII	GCCGAG	1 cut(s)	1356
NmuCI	GTSAC	8 cut(s)	187, 481, 782, 961, 1537, 1598, 1657, 1984
NsiI	ATGCAT	1 cut(s)	1039
NspI	RCATGY	2 cut(s)	511, 1041
PaeI	GCATGC	1 cut(s)	1041
PaeR7I	CTCGAG	1 cut(s)	98
PaqCI	CACCTGC	1 cut(s)	1138
PciI	ACATGT	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	3 cut(s)	78, 252, 821
PctI	GAATGC	1 cut(s)	519
PdiI	GCCGGC	2 cut(s)	376, 810
PdmI	GAANNNNTTC	2 cut(s)	722, 2149
PfeI	GAWTC	5 cut(s)	619, 697, 718, 1093, 1763
PflFI	GACNNNGTC	2 cut(s)	155, 788
PflMI	CCANNNNNTGG	2 cut(s)	120, 1319
PfoI	TCCNGGA	1 cut(s)	738
PkrI	GCNGC	7 cut(s)	67, 79, 119, 380, 518, 711, 972
PleI	GAGTC	5 cut(s)	161, 194, 1024, 1359, 2264
PluTI	GGCGCC	1 cut(s)	300
PpsI	GAGTC	5 cut(s)	161, 194, 1024, 1359, 2264
PpuMI	RGGWCCY	2 cut(s)	5, 872
PscI	ACATGT	1 cut(s)	507
PshBI	ATTAAT	1 cut(s)	1872
PsiI	TTATAA	1 cut(s)	1716
Psp124BI	GAGCTC	3 cut(s)	261, 462, 1337
Psp1406I	AACGTT	1 cut(s)	1919
Psp5II	RGGWCCY	2 cut(s)	5, 872
Psp6I	CCWGG	2 cut(s)	146, 477
PspEI	GGTNACC	1 cut(s)	1598
PspFI	CCCAGC	2 cut(s)	113, 941
PspGI	CCWGG	2 cut(s)	146, 477
PspN4I	GGNNCC	8 cut(s)	6, 298, 664, 807, 873, 892, 998, 1191
PspPI	GGNCC	8 cut(s)	5, 123, 587, 742, 872, 891, 944, 1190
PspPPI	RGGWCCY	2 cut(s)	5, 872
PstNI	CAGNNNCTG	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	611
PsyI	GACNNNGTC	2 cut(s)	155, 788
PvuII	CAGCTG	1 cut(s)	1225
RsaI	GTAC	7 cut(s)	664, 733, 998, 1559, 1780, 1898, 1904
RsaNI	GTAC	7 cut(s)	663, 732, 997, 1558, 1779, 1897, 1903
RseI	CAYNNNNRTG	3 cut(s)	506, 1113, 1433
SacI	GAGCTC	3 cut(s)	261, 462, 1337
SalI	GTCGAC	1 cut(s)	469
SaqAI	TTAA	5 cut(s)	636, 1083, 1872, 2127, 2278
SatI	GCNGC	7 cut(s)	66, 78, 118, 379, 517, 710, 971
Sau3AI	GATC	5 cut(s)	430, 611, 735, 769, 952
Sau96I	GGNCC	8 cut(s)	5, 123, 587, 742, 872, 891, 944, 1190
SchI	GAGTC	5 cut(s)	161, 195, 1025, 1360, 2265
ScrFI	CCNGG	6 cut(s)	148, 479, 586, 740, 1001, 1389
SduI	GDGCHC	3 cut(s)	261, 462, 1337
SfaNI	GCATC	6 cut(s)	143, 1024, 1057, 1117, 1228, 2080
SfoI	GGCGCC	1 cut(s)	298
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	6 cut(s)	5, 123, 742, 872, 891, 1190
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	3 cut(s)	506, 1113, 1433
SmlI	CTYRAG	2 cut(s)	98, 409
SmoI	CTYRAG	2 cut(s)	98, 409
SphI	GCATGC	1 cut(s)	1041
Sse9I	AATT	9 cut(s)	1004, 1252, 1274, 1515, 1521, 1666, 1743, 1812, 2218
SspDI	GGCGCC	1 cut(s)	296
SspMI	CTAG	5 cut(s)	1302, 1643, 1827, 1892, 2229
SstI	GAGCTC	3 cut(s)	261, 462, 1337
StyD4I	CCNGG	6 cut(s)	146, 477, 584, 738, 999, 1387
StyI	CCWWGG	2 cut(s)	440, 894
TaaI	ACNGT	4 cut(s)	649, 667, 1090, 1373
TaiI	ACGT	3 cut(s)	818, 1539, 1922
TaqI	TCGA	4 cut(s)	99, 345, 429, 470
TasI	AATT	9 cut(s)	1004, 1252, 1274, 1515, 1521, 1666, 1743, 1812, 2218
TatI	WGTACW	1 cut(s)	1902
TauI	GCSGC	4 cut(s)	68, 80, 120, 519
TfiI	GAWTC	5 cut(s)	619, 697, 718, 1093, 1763
Tru1I	TTAA	5 cut(s)	636, 1083, 1872, 2127, 2278
Tru9I	TTAA	5 cut(s)	636, 1083, 1872, 2127, 2278
TscAI	CASTG	5 cut(s)	733, 943, 1095, 1386, 1779
TseFI	GTSAC	8 cut(s)	187, 481, 782, 961, 1537, 1598, 1657, 1984
TseI	GCWGC	3 cut(s)	378, 709, 970
Tsp45I	GTSAC	8 cut(s)	187, 481, 782, 961, 1537, 1598, 1657, 1984
TspDTI	ATGAA	6 cut(s)	1417, 1595, 1808, 2038, 2226, 2234
TspGWI	ACGGA	2 cut(s)	1344, 2157
TspRI	CASTG	5 cut(s)	733, 943, 1095, 1386, 1779
Tth111I	GACNNNGTC	2 cut(s)	155, 788
Van91I	CCANNNNNTGG	2 cut(s)	120, 1319
VpaK11BI	GGWCC	6 cut(s)	5, 123, 742, 872, 891, 1190
VspI	ATTAAT	1 cut(s)	1872
XapI	RAATTY	2 cut(s)	1274, 1812
XceI	RCATGY	2 cut(s)	511, 1041
XhoI	CTCGAG	1 cut(s)	98
XmiI	GTMKAC	2 cut(s)	339, 470
XmnI	GAANNNNTTC	2 cut(s)	722, 2149
XspI	CTAG	5 cut(s)	1302, 1643, 1827, 1892, 2229
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.