pycom04g05200

Belongs to the glycosyltransferase 1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
4964627 .. 4965154
528 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGGCTTTTTCTCTGCTAACCCAATCCGCCTCCTACTCACATGACCCAACCACCCCCTGCCTCATTTCTCCCTCCTTTTATCTCCTCTGTATCCACCCATCCGCTCCCTCCCTTCTTTCCTCTGCACCCACCCATCTGCATCCGAGCCTTGACGACGCCAAACCGTCGCTTATCCTCTGTGAAAGCAGCAGTTTTAGTTTGATTTGTTACTTCGTCGAAGAGGTTATCACTTGCTACAATGAGACCGATCTCCACTGCTCCTGGGTTCGGGTGGCGACAACAGTGAGGAGTCCGAAGGAAAGGAACACAAGGTTGGATGAGATAGGCTGGCGGATTTGGAATTTGATGTGGGTTTGGTGGAATTTAAGGGTTTTGATGTGGGATTGA

Protein Analysis

129

Amino Acids

14.75

Weight (kDa)

5.63

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 104
AciI CCGC 3 cut(s) 27, 102, 331
AcsI RAATTY 2 cut(s) 340, 361
AcyI GRCGYC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 267
AjnI CCWGG 1 cut(s) 260
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
Alw26I GTCTC 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 186
ApoI RAATTY 2 cut(s) 340, 361
BbvI GCAGC 1 cut(s) 198
BccI CCATC 2 cut(s) 106, 141
BciT130I CCWGG 1 cut(s) 262
BciVI GTATCC 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 236
BfuI GTATCC 1 cut(s) 101
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 3 cut(s) 98, 139, 322
BseLI CCNNNNNNNGG 1 cut(s) 267
BseRI GAGGAG 2 cut(s) 74, 301
BseXI GCAGC 1 cut(s) 198
BsgI GTGCAG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 236
Bso31I GGTCTC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 3 cut(s) 27, 102, 331
BspTNI GGTCTC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 2 cut(s) 165, 283
Bst6I CTCTTC 1 cut(s) 213
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 329
BstF5I GGATG 3 cut(s) 98, 139, 322
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 247
BstNI CCWGG 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 198
BsuI GTATCC 1 cut(s) 101
BtsCI GGATG 3 cut(s) 98, 139, 322
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 253, 288
Cac8I GCNNGC 1 cut(s) 329
CseI GACGC 1 cut(s) 164
CviAII CATG 1 cut(s) 41
CviJI RGCY 3 cut(s) 5, 147, 327
CviKI_1 RGCY 3 cut(s) 5, 147, 327
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EciI GGCGGA 2 cut(s) 16, 346
Eco31I GGTCTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 260
FaeI CATG 1 cut(s) 44
FaiI YATR 1 cut(s) 42
FatI CATG 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 3 cut(s) 85, 126, 329
Fsp4HI GCNGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 187
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 1 cut(s) 44
HinfI GANTC 1 cut(s) 289
Hpy188I TCNGA 2 cut(s) 144, 294
Hpy99I CGWCG 3 cut(s) 158, 169, 218
HpyAV CCTTC 2 cut(s) 122, 289
HpyCH4III ACNGT 2 cut(s) 165, 283
HpyCH4V TGCA 2 cut(s) 125, 139
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 1 cut(s) 44
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 2 cut(s) 109, 263
LpnPI CCDG 4 cut(s) 70, 247, 274, 313
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 206
MalI GATC 1 cut(s) 249
MbiI CCGCTC 1 cut(s) 104
MboI GATC 1 cut(s) 247
MboII GAAGA 1 cut(s) 230
MluCI AATT 2 cut(s) 340, 361
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 9 cut(s) 40, 71, 82, 95, 118, 130, 185, 214, 279
MseI TTAA 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
NdeII GATC 1 cut(s) 247
NlaIII CATG 1 cut(s) 44
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 1 cut(s) 247
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 262
SetI ASST 2 cut(s) 225, 314
SfaNI GCATC 1 cut(s) 148
Sse9I AATT 2 cut(s) 340, 361
SsiI CCGC 3 cut(s) 27, 102, 331
StyD4I CCNGG 1 cut(s) 260
TaaI ACNGT 2 cut(s) 165, 283
TaqI TCGA 1 cut(s) 216
TaqII GACCGA 1 cut(s) 260
TasI AATT 2 cut(s) 340, 361
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 2 cut(s) 260, 288
TseI GCWGC 1 cut(s) 186
TspRI CASTG 2 cut(s) 260, 288
XapI RAATTY 2 cut(s) 340, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.