Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013742

Physical Location & Seq

Genomic Coordinates Reverse (-)

3611116 .. 3611938

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031273

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCCGGAGGATACCAGAATGGCCGAGAACGACTGGATAAATAGTTACCTGGAGGCGATTCTCAACATCGGTCTAGGCCTCGTCGACGACGCTAAGTCGTCGTTCCTGCTTCAAGAGAAAGGTTACTTTAGTCCGGCTTGCTACATGGTCGAGGATGTCATCACTGGCTTTGATGAGACCGATCTCCACTGCTCTTGGGTTCGCGCCGCCGCGACGAGAGTCAGCAGGTTGGAAAATCTGTGCTGGCGGATTTGGAACTTGGCCAGAAGCAGTACTGAAGGCTACTGTGAAAGAAGAGGATGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0046903 GO:0051179 GO:0051234 GO:0055044 GO:0071836 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

103

Amino Acids

11.79

Weight (kDa)

4.77

Isoelectric Point (pI)

62.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013742)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g05200
rosa_laevigata	RLG00000008892 RLG00000009007 RLG00000031273
rosa_multiflora	Rmu_co8486111.1_g000001 Rmu_sc0002299.1_g000008 Rmu_sc0003498.1_g000001 Rmu_sc0005141.1_g000004 Rmu_sc0036114.1_g000001
rosa_roxburghii	Rroxscaffold_1G00047660 Rroxscaffold_1G00051750 Rroxscaffold_2G00116530
rosa_samantha	Rh1DG048700 Rh1DG152800 Rh2CG637500 Rh2DG688300 Rh4AG247500 Rh7BG041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	2 cut(s)	204, 212
AciI	CCGC	3 cut(s)	207, 210, 247
AcoI	YGGCCR	2 cut(s)	21, 261
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	274
AgsI	TTSAA	1 cut(s)	113
AhdI	GACNNNNNGTC	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	170
AoxI	GGCC	3 cut(s)	21, 76, 261
AspLEI	GCGC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	263
BccI	CCATC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	4
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	4
BisI	GCNGC	2 cut(s)	207, 210
BlsI	GCNGC	2 cut(s)	208, 211
BmcAI	AGTACT	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	50
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	50
BoxI	GACNNNNGTC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	38, 169
BseBI	CCWGG	1 cut(s)	50
BseGI	GGATG	2 cut(s)	160, 305
BseNI	ACTGG	2 cut(s)	38, 169
Bsh1236I	CGCG	2 cut(s)	204, 212
BshFI	GGCC	3 cut(s)	23, 78, 263
BsiSI	CCGG	2 cut(s)	5, 134
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	3 cut(s)	23, 78, 263
Bso31I	GGTCTC	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	3 cut(s)	207, 210, 247
BspANI	GGCC	3 cut(s)	23, 78, 263
BspFNI	CGCG	2 cut(s)	204, 212
BspMI	ACCTGC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	38, 169
BssMI	GATC	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	139, 245
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	160, 305
BstFNI	CGCG	2 cut(s)	204, 212
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	50
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	48
BstUI	CGCG	2 cut(s)	204, 212
BsuI	GTATCC	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	23, 78, 263
BtsCI	GGATG	2 cut(s)	160, 305
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	2 cut(s)	162, 187
BveI	ACCTGC	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	139, 245
CfoI	GCGC	1 cut(s)	206
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	273
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	6 cut(s)	23, 78, 137, 168, 263, 282
CviKI_1	RGCY	6 cut(s)	23, 78, 137, 168, 263, 282
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
DriI	GACNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	2 cut(s)	21, 261
Eam1104I	CTCTTC	1 cut(s)	289
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	289
EciI	GGCGGA	1 cut(s)	262
Eco147I	AGGCCT	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	148
FaiI	YATR	1 cut(s)	146
FatI	CATG	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	207, 210
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	207, 210
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	2 cut(s)	207, 210
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	23, 78, 263
HapII	CCGG	2 cut(s)	5, 134
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	58, 219
HpaII	CCGG	2 cut(s)	5, 134
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	5 cut(s)	86, 89, 92, 103, 217
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	44, 122
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	1 cut(s)	306
MlsI	TGGCCA	1 cut(s)	263
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	4 cut(s)	46, 89, 145, 290
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	263
MspI	CCGG	2 cut(s)	5, 134
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	2 cut(s)	204, 212
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	148
NmeAIII	GCCGAG	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	208, 211
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PshAI	GACNNNNGTC	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SalI	GTCGAC	1 cut(s)	83
SatI	GCNGC	2 cut(s)	207, 210
Sau3AI	GATC	1 cut(s)	181
ScaI	AGTACT	1 cut(s)	274
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	3 cut(s)	51, 124, 230
SgrDI	CGTCGACG	1 cut(s)	83
SseBI	AGGCCT	1 cut(s)	78
SsiI	CCGC	3 cut(s)	207, 210, 247
SspMI	CTAG	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	287
TaqI	TCGA	2 cut(s)	84, 150
TaqII	GACCGA	2 cut(s)	59, 194
TatI	WGTACW	1 cut(s)	272
TauI	GCSGC	2 cut(s)	209, 212
TfiI	GAWTC	1 cut(s)	58
TscAI	CASTG	2 cut(s)	169, 194
TspRI	CASTG	2 cut(s)	169, 194
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.