Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005141.1

Orthogroup ID

OG0013742

Physical Location & Seq

Genomic Coordinates Reverse (-)

19305 .. 22254

Gene Structure 2950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005141.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggcatcaccgacgaagaacatctccgacgtcaaaagctctcccttggaggcaactgacggttgcgcagcaaagctcaacgctggcccgatgatctcgacggagagaagccttgctgtggatcagagcgaaacgagacggcatcgtttcaccacctcctcctctttctcccaaaaggagaaagagtcttcgagtgcgtcttctcccggccgcacgacgccggctccgtgccgctgcgttccggtccgggagaggaggttaggctgggcttgcggtatggtcctccggcgggggcttggctctgggatggcggacggggaagatctggttagatctcctcctcgtcggtggttcagggtgctcggcgatggatgggtcttcgatcccagggctgtgacgagctcgggtttggctcgcccctttctgggtttcatgtactcagccttactgcggcttcatgtcggtcccggcctcgacgacgccaaatcttcgtcctcgctgctgctccgggaacgaggtcgtttcagtcccactcgttacttcgtcgaagaggtcatcactcgctacgatgagactgatctccaccgctcctgggttcgagctgcggcgacggcgaggagcaccgaggagaggaacaccaggctggagaacatgtgctggcggatttgcctccatggcttgatacgcggtgaaaacatggaggttggtcgtgattctgatacaggtggccaggtaatacctcctggaatggaatttcatcatattattccacccgcagatggtgatgcagatggggaaggggaaagaaatgatgatggtactgctaatccccacctgccaatttggtcagaggttataactattctttcttctcgtcctgctattctttcttctcttgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0046903 GO:0051179 GO:0051234 GO:0055044 GO:0071836 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

300

Amino Acids

32.95

Weight (kDa)

7.69

Isoelectric Point (pI)

63.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013742)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g05200
rosa_laevigata	RLG00000008892 RLG00000009007 RLG00000031273
rosa_multiflora	Rmu_co8486111.1_g000001 Rmu_sc0002299.1_g000008 Rmu_sc0003498.1_g000001 Rmu_sc0005141.1_g000004 Rmu_sc0036114.1_g000001
rosa_roxburghii	Rroxscaffold_1G00047660 Rroxscaffold_1G00051750 Rroxscaffold_2G00116530
rosa_samantha	Rh1DG048700 Rh1DG152800 Rh2CG637500 Rh2DG688300 Rh4AG247500 Rh7BG041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	857
AarI	CACCTGC	1 cut(s)	843
AatII	GACGTC	1 cut(s)	33
Acc16I	TGCGCA	1 cut(s)	67
Acc36I	ACCTGC	1 cut(s)	843
AccBSI	CCGCTC	1 cut(s)	588
AccII	CGCG	1 cut(s)	687
AclWI	GGATC	2 cut(s)	129, 377
AcoI	YGGCCR	2 cut(s)	208, 727
AcsI	RAATTY	1 cut(s)	752
AcyI	GRCGYC	3 cut(s)	30, 218, 480
AfaI	GTAC	2 cut(s)	437, 820
AfiI	CCNNNNNNNGG	8 cut(s)	118, 289, 424, 425, 450, 592, 630, 779
AflIII	ACRYGT	1 cut(s)	651
AjnI	CCWGG	5 cut(s)	386, 590, 638, 729, 742
AluBI	AGCT	4 cut(s)	39, 76, 402, 602
AluI	AGCT	4 cut(s)	39, 76, 402, 602
Alw21I	GWGCWC	3 cut(s)	363, 404, 623
Alw26I	GTCTC	2 cut(s)	130, 566
AlwI	GGATC	2 cut(s)	129, 377
Ama87I	CYCGRG	1 cut(s)	403
AoxI	GGCC	4 cut(s)	85, 208, 469, 727
ApeKI	GCWGC	5 cut(s)	68, 234, 499, 502, 602
ApoI	RAATTY	1 cut(s)	752
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	4 cut(s)	86, 244, 280, 464
AsuC2I	CCSGG	4 cut(s)	207, 248, 468, 509
AsuHPI	GGTGA	3 cut(s)	142, 701, 794
AvaI	CYCGRG	1 cut(s)	403
AvaII	GGWCC	3 cut(s)	244, 280, 464
BalI	TGGCCA	1 cut(s)	729
BanII	GRGCYC	1 cut(s)	404
BbsI	GAAGAC	3 cut(s)	180, 192, 370
Bbv12I	GWGCWC	3 cut(s)	363, 404, 623
BbvI	GCAGC	5 cut(s)	80, 221, 486, 489, 589
BccI	CCATC	6 cut(s)	301, 362, 366, 773, 785, 809
BceAI	ACGGC	2 cut(s)	155, 627
BciT130I	CCWGG	5 cut(s)	388, 592, 640, 731, 744
BcnI	CCSGG	4 cut(s)	207, 248, 468, 509
BcoDI	GTCTC	2 cut(s)	130, 566
BfuAI	ACCTGC	1 cut(s)	843
BglI	GCCNNNNNGGC	1 cut(s)	675
BglII	AGATCT	2 cut(s)	322, 332
BisI	GCNGC	9 cut(s)	69, 211, 232, 235, 452, 500, 503, 603, 606
BlsI	GCNGC	9 cut(s)	70, 212, 233, 236, 453, 501, 504, 604, 607
Bme1390I	CCNGG	9 cut(s)	207, 248, 388, 468, 509, 592, 640, 731, 744
Bme18I	GGWCC	3 cut(s)	244, 280, 464
BmeT110I	CYCGRG	1 cut(s)	403
BmgT120I	GGNCC	4 cut(s)	86, 244, 280, 464
BmiI	GGNNCC	2 cut(s)	225, 466
BmrFI	CCNGG	9 cut(s)	207, 248, 388, 468, 509, 592, 640, 731, 744
BmsI	GCATC	3 cut(s)	14, 151, 775
BpiI	GAAGAC	3 cut(s)	180, 192, 370
BpmI	CTGGAG	1 cut(s)	665
BpuMI	CCSGG	4 cut(s)	207, 248, 468, 509
BsaHI	GRCGYC	3 cut(s)	30, 218, 480
BsaJI	CCNNGG	6 cut(s)	45, 386, 387, 591, 624, 673
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	8 cut(s)	170, 200, 208, 238, 242, 272, 638, 668
Bsc4I	CCNNNNNNNGG	8 cut(s)	118, 289, 424, 425, 450, 592, 630, 779
Bse118I	RCCGGY	1 cut(s)	220
BseBI	CCWGG	5 cut(s)	388, 592, 640, 731, 744
BseDI	CCNNGG	6 cut(s)	45, 386, 387, 591, 624, 673
BseGI	GGATG	2 cut(s)	312, 377
BseLI	CCNNNNNNNGG	8 cut(s)	118, 289, 424, 425, 450, 592, 630, 779
BseMII	CTCAG	1 cut(s)	453
BseRI	GAGGAG	7 cut(s)	148, 151, 268, 327, 330, 631, 641
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	5 cut(s)	80, 221, 486, 489, 589
BseYI	CCCAGC	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	687
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	4 cut(s)	87, 210, 471, 729
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	3 cut(s)	363, 404, 623
BsiHKCI	CYCGRG	1 cut(s)	403
BsiSI	CCGG	7 cut(s)	207, 221, 242, 247, 286, 468, 508
BslFI	GGGAC	2 cut(s)	450, 513
BslI	CCNNNNNNNGG	8 cut(s)	118, 289, 424, 425, 450, 592, 630, 779
BsmAI	GTCTC	2 cut(s)	130, 566
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	2 cut(s)	450, 513
BsnI	GGCC	4 cut(s)	87, 210, 471, 729
BsoBI	CYCGRG	1 cut(s)	403
Bsp1286I	GDGCHC	3 cut(s)	363, 404, 623
Bsp143I	GATC	6 cut(s)	93, 121, 322, 332, 382, 577
Bsp19I	CCATGG	1 cut(s)	673
BspANI	GGCC	4 cut(s)	87, 210, 471, 729
BspCNI	CTCAG	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	687
BspLI	GGNNCC	2 cut(s)	225, 466
BspMI	ACCTGC	1 cut(s)	843
BspPI	GGATC	2 cut(s)	129, 377
BsrBI	CCGCTC	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	6 cut(s)	45, 386, 387, 591, 624, 673
BssMI	GATC	6 cut(s)	93, 121, 322, 332, 382, 577
BssNI	GRCGYC	3 cut(s)	30, 218, 480
BssT1I	CCWWGG	2 cut(s)	45, 673
Bst2UI	CCWGG	5 cut(s)	388, 592, 640, 731, 744
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	543
BstACI	GRCGYC	3 cut(s)	30, 218, 480
BstC8I	GCNNGC	5 cut(s)	85, 222, 271, 415, 659
BstDEI	CTNAG	2 cut(s)	439, 900
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	2 cut(s)	312, 377
BstFNI	CGCG	1 cut(s)	687
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	6 cut(s)	96, 124, 325, 335, 385, 580
BstMAI	GTCTC	2 cut(s)	130, 566
BstMBI	GATC	6 cut(s)	93, 121, 322, 332, 382, 577
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	4 cut(s)	270, 611, 675, 684
BstNI	CCWGG	5 cut(s)	388, 592, 640, 731, 744
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	9 cut(s)	205, 246, 386, 466, 507, 590, 638, 729, 742
BstUI	CGCG	1 cut(s)	687
BstV1I	GCAGC	5 cut(s)	80, 221, 486, 489, 589
BstV2I	GAAGAC	3 cut(s)	180, 192, 370
BstX2I	RGATCY	2 cut(s)	322, 332
BstYI	RGATCY	2 cut(s)	322, 332
BstZI	CGGCCG	1 cut(s)	208
BsuRI	GGCC	4 cut(s)	87, 210, 471, 729
BtgI	CCRYGG	1 cut(s)	673
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	312, 377
BveI	ACCTGC	1 cut(s)	843
Cac8I	GCNNGC	5 cut(s)	85, 222, 271, 415, 659
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	4 cut(s)	86, 244, 280, 464
CpoI	CGGWCCG	1 cut(s)	244
CseI	GACGC	3 cut(s)	186, 226, 488
Csp6I	GTAC	2 cut(s)	436, 819
CspI	CGGWCCG	1 cut(s)	244
CviAII	CATG	5 cut(s)	433, 458, 652, 674, 697
CviQI	GTAC	2 cut(s)	436, 819
DdeI	CTNAG	2 cut(s)	439, 900
DpnI	GATC	6 cut(s)	95, 123, 324, 334, 384, 579
DpnII	GATC	6 cut(s)	93, 121, 322, 332, 382, 577
EaeI	YGGCCR	2 cut(s)	208, 727
EagI	CGGCCG	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
EciI	GGCGGA	2 cut(s)	326, 676
Ecl136II	GAGCTC	1 cut(s)	402
EclXI	CGGCCG	1 cut(s)	208
Eco130I	CCWWGG	2 cut(s)	45, 673
Eco24I	GRGCYC	1 cut(s)	404
Eco47I	GGWCC	3 cut(s)	244, 280, 464
Eco52I	CGGCCG	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	402
EcoRII	CCWGG	5 cut(s)	386, 590, 638, 729, 742
EcoT14I	CCWWGG	2 cut(s)	45, 673
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	2 cut(s)	45, 673
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	5 cut(s)	436, 461, 655, 677, 700
FaiI	YATR	8 cut(s)	278, 434, 459, 653, 675, 698, 762, 857
FaqI	GGGAC	2 cut(s)	450, 513
FatI	CATG	5 cut(s)	432, 457, 651, 673, 696
FauI	CCCGC	2 cut(s)	282, 781
Fnu4HI	GCNGC	9 cut(s)	69, 211, 232, 235, 452, 500, 503, 603, 606
FokI	GGATG	2 cut(s)	319, 384
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	9 cut(s)	69, 211, 232, 235, 452, 500, 503, 603, 606
FspI	TGCGCA	1 cut(s)	67
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	9 cut(s)	69, 211, 232, 235, 452, 500, 503, 603, 606
GsaI	CCCAGC	1 cut(s)	268
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	4 cut(s)	87, 210, 471, 729
HapII	CCGG	7 cut(s)	207, 221, 242, 247, 286, 468, 508
HgaI	GACGC	3 cut(s)	186, 226, 488
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	3 cut(s)	30, 218, 480
Hin1II	CATG	5 cut(s)	436, 461, 655, 677, 700
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	185, 713
HpaII	CCGG	7 cut(s)	207, 221, 242, 247, 286, 468, 508
HphI	GGTGA	3 cut(s)	142, 701, 794
Hpy188I	TCNGA	4 cut(s)	28, 126, 718, 850
Hpy188III	TCNNGA	2 cut(s)	97, 710
Hpy99I	CGWCG	9 cut(s)	16, 32, 103, 220, 348, 479, 482, 548, 613
HpyAV	CCTTC	1 cut(s)	791
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	270, 611, 675, 684
HpyF3I	CTNAG	2 cut(s)	439, 900
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	3 cut(s)	30, 218, 480
Hsp92II	CATG	5 cut(s)	436, 461, 655, 677, 700
HspAI	GCGC	1 cut(s)	66
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
Kzo9I	GATC	6 cut(s)	93, 121, 322, 332, 382, 577
LmnI	GCTCC	4 cut(s)	229, 510, 593, 618
Lsp1109I	GCAGC	5 cut(s)	80, 221, 486, 489, 589
LweI	GCATC	3 cut(s)	14, 151, 775
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	394, 536
MalI	GATC	6 cut(s)	95, 123, 324, 334, 384, 579
MbiI	CCGCTC	1 cut(s)	588
MboI	GATC	6 cut(s)	93, 121, 322, 332, 382, 577
MboII	GAAGA	9 cut(s)	28, 180, 192, 332, 370, 480, 560, 861, 882
MflI	RGATCY	2 cut(s)	322, 332
MhlI	GDGCHC	3 cut(s)	363, 404, 623
MlsI	TGGCCA	1 cut(s)	729
MluCI	AATT	2 cut(s)	752, 840
MluNI	TGGCCA	1 cut(s)	729
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	51
Mox20I	TGGCCA	1 cut(s)	729
MroNI	GCCGGC	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	729
Msp20I	TGGCCA	1 cut(s)	729
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	7 cut(s)	207, 221, 242, 247, 286, 468, 508
MspR9I	CCNGG	9 cut(s)	207, 248, 388, 468, 509, 592, 640, 731, 744
MvaI	CCWGG	5 cut(s)	388, 592, 640, 731, 744
MvnI	CGCG	1 cut(s)	687
MwoI	GCNNNNNNNGC	4 cut(s)	270, 611, 675, 684
NaeI	GCCGGC	1 cut(s)	222
NciI	CCSGG	4 cut(s)	207, 248, 468, 509
NcoI	CCATGG	1 cut(s)	673
NdeII	GATC	6 cut(s)	93, 121, 322, 332, 382, 577
NgoMIV	GCCGGC	1 cut(s)	220
NlaIII	CATG	5 cut(s)	436, 461, 655, 677, 700
NlaIV	GGNNCC	2 cut(s)	225, 466
NmeAIII	GCCGAG	1 cut(s)	342
NmuCI	GTSAC	1 cut(s)	394
NsbI	TGCGCA	1 cut(s)	67
NspI	RCATGY	1 cut(s)	655
PaqCI	CACCTGC	1 cut(s)	843
PasI	CCCWGGG	1 cut(s)	387
PciI	ACATGT	1 cut(s)	651
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PdiI	GCCGGC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	713
PfoI	TCCNGGA	3 cut(s)	246, 507, 742
PkrI	GCNGC	9 cut(s)	70, 212, 233, 236, 453, 501, 504, 604, 607
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PscI	ACATGT	1 cut(s)	651
PsiI	TTATAA	1 cut(s)	857
Psp124BI	GAGCTC	1 cut(s)	404
Psp6I	CCWGG	5 cut(s)	386, 590, 638, 729, 742
PspFI	CCCAGC	1 cut(s)	264
PspGI	CCWGG	5 cut(s)	386, 590, 638, 729, 742
PspN4I	GGNNCC	2 cut(s)	225, 466
PspPI	GGNCC	4 cut(s)	86, 244, 280, 464
PsuI	RGATCY	2 cut(s)	322, 332
RsaI	GTAC	2 cut(s)	437, 820
RsaNI	GTAC	2 cut(s)	436, 819
Rsr2I	CGGWCCG	1 cut(s)	244
RsrII	CGGWCCG	1 cut(s)	244
SacI	GAGCTC	1 cut(s)	404
SatI	GCNGC	9 cut(s)	69, 211, 232, 235, 452, 500, 503, 603, 606
Sau3AI	GATC	6 cut(s)	93, 121, 322, 332, 382, 577
Sau96I	GGNCC	4 cut(s)	86, 244, 280, 464
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	9 cut(s)	207, 248, 388, 468, 509, 592, 640, 731, 744
SduI	GDGCHC	3 cut(s)	363, 404, 623
SfaNI	GCATC	3 cut(s)	14, 151, 775
SinI	GGWCC	3 cut(s)	244, 280, 464
Sse9I	AATT	2 cut(s)	752, 840
SstI	GAGCTC	1 cut(s)	404
StyD4I	CCNGG	9 cut(s)	205, 246, 386, 466, 507, 590, 638, 729, 742
StyI	CCWWGG	2 cut(s)	45, 673
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	6 cut(s)	98, 191, 381, 474, 546, 598
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	2 cut(s)	752, 840
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	4 cut(s)	213, 234, 454, 608
TfiI	GAWTC	1 cut(s)	713
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	5 cut(s)	68, 234, 499, 502, 602
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	3 cut(s)	421, 446, 746
TspGWI	ACGGA	2 cut(s)	116, 216
VpaK11BI	GGWCC	3 cut(s)	244, 280, 464
XapI	RAATTY	1 cut(s)	752
XceI	RCATGY	1 cut(s)	655
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.