Rmu_co8486111.1_g000001

Belongs to the glycosyltransferase 1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8486111.1
Physical Location & Seq
Forward (+)
1277 .. 1537
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8486111.1_g000001.1.cds

Sequence Viewer

Length: 261 bp
atggcgggaaacgactggttaaacggttatctcgaggcgattctggatgcaggaattaacacaaggaaaacgaacgatgggaagcagaagattgccaagtttgaagagcaagtcaaggaggagaagttgtttagtcccacaaagtacttcgtggaagaagtagttagcagctttgatgagtctgacctccacaggacatgggttaaggtctcttctcttccctttcttcttcactctgtctctgaaatttcaattgattag

Protein Analysis

86

Amino Acids

9.82

Weight (kDa)

4.94

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 246
AfaI GTAC 1 cut(s) 146
AgsI TTSAA 2 cut(s) 104, 252
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw26I GTCTC 2 cut(s) 214, 244
Ama87I CYCGRG 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 246
AvaI CYCGRG 1 cut(s) 32
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 71
BcoDI GTCTC 2 cut(s) 214, 244
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
BmcAI AGTACT 1 cut(s) 146
BmeT110I CYCGRG 1 cut(s) 32
BmsI GCATC 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 214
BsaXI ACNNNNNCTCC 4 cut(s) 110, 113, 140, 143
Bse1I ACTGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 180
BsiHKCI CYCGRG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 120
BsmAI GTCTC 2 cut(s) 214, 244
BsmFI GGGAC 1 cut(s) 120
Bso31I GGTCTC 1 cut(s) 214
BsoBI CYCGRG 1 cut(s) 32
BspACI CCGC 1 cut(s) 5
BspQI GCTCTTC 1 cut(s) 99
BspTNI GGTCTC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 3 cut(s) 99, 217, 222
BstF5I GGATG 1 cut(s) 52
BstMAI GTCTC 2 cut(s) 214, 244
BstV1I GCAGC 1 cut(s) 180
BtsCI GGATG 1 cut(s) 52
Csp6I GTAC 1 cut(s) 145
CviAII CATG 1 cut(s) 198
CviJI RGCY 1 cut(s) 171
CviKI_1 RGCY 1 cut(s) 171
CviQI GTAC 1 cut(s) 145
Eam1104I CTCTTC 3 cut(s) 99, 217, 222
EarI CTCTTC 3 cut(s) 99, 217, 222
Eco31I GGTCTC 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 32
FaeI CATG 1 cut(s) 201
FaiI YATR 1 cut(s) 199
FaqI GGGAC 1 cut(s) 120
FatI CATG 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 169
Hin1II CATG 1 cut(s) 201
HinfI GANTC 2 cut(s) 40, 179
Hpy188I TCNGA 2 cut(s) 184, 244
Hpy188III TCNNGA 2 cut(s) 32, 44
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 50
Hsp92II CATG 1 cut(s) 201
LguI GCTCTTC 1 cut(s) 99
LpnPI CCDG 3 cut(s) 29, 36, 178
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 1 cut(s) 37
MboII GAAGA 7 cut(s) 100, 116, 167, 204, 209, 218, 221
MfeI CAATTG 1 cut(s) 252
MluCI AATT 3 cut(s) 54, 246, 252
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 3 cut(s) 28, 112, 197
MseI TTAA 3 cut(s) 20, 57, 204
MunI CAATTG 1 cut(s) 252
NlaIII CATG 1 cut(s) 201
PaeR7I CTCGAG 1 cut(s) 32
PciSI GCTCTTC 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 1 cut(s) 170
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 3 cut(s) 20, 57, 204
SatI GCNGC 1 cut(s) 169
ScaI AGTACT 1 cut(s) 146
SchI GAGTC 1 cut(s) 188
SetI ASST 3 cut(s) 173, 189, 210
SfaNI GCATC 1 cut(s) 37
Sfr274I CTCGAG 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 3 cut(s) 54, 246, 252
SsiI CCGC 1 cut(s) 5
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 33
TasI AATT 3 cut(s) 54, 246, 252
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 3 cut(s) 20, 57, 204
Tru9I TTAA 3 cut(s) 20, 57, 204
TseI GCWGC 1 cut(s) 168
XapI RAATTY 1 cut(s) 246
XhoI CTCGAG 1 cut(s) 32
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.