Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013742

Physical Location & Seq

Genomic Coordinates Reverse (-)

67400435 .. 67403109

Gene Structure 2675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00047660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGCTAACATCGACGGTCAAGCCCTCCCTGCTCACCGAAACGAATACAGCGCGGCCGAGCCAGCCTACCACCAATCCTTCCTCCTCCGGAAAATACTACCGTAAAGCTTACCAACTTCACTACGAGTTTCACATTCGTCATCGACACTCTAAGCAACAACTCCTACTATGCCGACGGCCTCGCCTTCTTCCTAGCGCCGAGGGATCCTTACTAAACTTCACGGTAGGAAGCGGCATTGGCTTCCCCGTGGATAATCCGCAGGAGAAGCCGTCGTCGAGTGCTCGCTCGGGTTTGGCTCGCCCCTTTCGGGTTTCATGTACTCGCCCTTACGCGGCTTCATGTCGGTCCCGGCCTCGACGACGCCAAATCTTCGTCCTCGCCGCTGCTCGGGAACGAGGTCGTTTCGGTCCCACTCGTTACTTCGTCGAAGAGGTCATCACTCGCTACGATGAGACCGATCTCCACCGCTCCCGGGTTCGAGCTGCGGCGACGGCAAGGAGCGCCGAGGAGAGGAACACCAGGCTGGAGAACATGTGTTGGCGGATTTGGAATCTTGCTCGCAAAAAGAAGCAGCTTGAGGGAGAAGAAGACTTATCTGAAGGAGAGAGTAGAGACACAGTTGGTGATATTTCAGCTCATAATAGTGATAGCACTAGAGGAGGAAGAATGCGTAGAATCAATTCTATGGATGTGATGGAGAACTGGGCTGCTCATCAAAAGGAAAAGAAATTCTACATTGTTTTATGGAAGACGATGCATATGATATATCTTGCACTCTTGATACCACTTGATGCTTTAATTTCTAACAAGCAGTCTTCATGCAGCCTCCATGGCTTGATACGCGGTGAAAACATGGAGCTTGGTCGTGATTCTGATACAGGTGGCCAGGTCAAGTATGTTGTGGAACTTGCCAGCACTAGACAGGAAATAGACTCACAATGGCGCTTGTATGATGGCTTTGATCCAATACTAGAACGTAAACTGCGAGCAAGAATAAAAAGGGGCGTAATACCTCCTGGAATGGAATTTCATCATATTATTCCACCCGCAGATGGTGATGCAGATGGGGAAGGGGAAAGAAATGATGATGGTACTGCTAATCCCGACCTGCCAATTTGGTCAGAGGTTATAACTATTCTTTCTTCTCGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008194 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0016020 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0035251 GO:0043062 GO:0044085 GO:0044464 GO:0045229 GO:0046524 GO:0046527 GO:0046903 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0071836 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

384

Amino Acids

43.7

Weight (kDa)

9.61

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013742)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g05200
rosa_laevigata	RLG00000008892 RLG00000009007 RLG00000031273
rosa_multiflora	Rmu_co8486111.1_g000001 Rmu_sc0002299.1_g000008 Rmu_sc0003498.1_g000001 Rmu_sc0005141.1_g000004 Rmu_sc0036114.1_g000001
rosa_roxburghii	Rroxscaffold_1G00047660 Rroxscaffold_1G00051750 Rroxscaffold_2G00116530
rosa_samantha	Rh1DG048700 Rh1DG152800 Rh2CG637500 Rh2DG688300 Rh4AG247500 Rh7BG041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1130
Acc36I	ACCTGC	1 cut(s)	1116
AccBSI	CCGCTC	1 cut(s)	468
AccII	CGCG	3 cut(s)	52, 332, 843
AccIII	TCCGGA	1 cut(s)	86
AclWI	GGATC	3 cut(s)	198, 211, 956
AcoI	YGGCCR	2 cut(s)	53, 883
AcsI	RAATTY	2 cut(s)	728, 1025
AcuI	CTGAAG	1 cut(s)	618
AcyI	GRCGYC	1 cut(s)	361
AfaI	GTAC	2 cut(s)	319, 1093
AfiI	CCNNNNNNNGG	6 cut(s)	307, 331, 387, 472, 510, 1052
AflIII	ACRYGT	1 cut(s)	531
AjnI	CCWGG	3 cut(s)	518, 885, 1015
AluBI	AGCT	5 cut(s)	107, 482, 574, 635, 859
AluI	AGCT	5 cut(s)	107, 482, 574, 635, 859
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	2 cut(s)	446, 606
AlwI	GGATC	3 cut(s)	198, 211, 956
Ama87I	CYCGRG	3 cut(s)	286, 387, 471
Aor13HI	TCCGGA	1 cut(s)	86
AoxI	GGCC	4 cut(s)	53, 176, 350, 883
ApeKI	GCWGC	5 cut(s)	383, 482, 571, 707, 822
ApoI	RAATTY	2 cut(s)	728, 1025
Asp700I	GAANNNNTTC	1 cut(s)	679
AspLEI	GCGC	4 cut(s)	52, 197, 503, 945
AspS9I	GGNCC	2 cut(s)	345, 407
AsuC2I	CCSGG	3 cut(s)	349, 472, 473
AsuHPI	GGTGA	4 cut(s)	25, 635, 857, 1067
AvaI	CYCGRG	3 cut(s)	286, 387, 471
AvaII	GGWCC	2 cut(s)	345, 407
BalI	TGGCCA	1 cut(s)	885
BamHI	GGATCC	1 cut(s)	203
BauI	CACGAG	1 cut(s)	1146
BbsI	GAAGAC	3 cut(s)	594, 755, 807
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	5 cut(s)	370, 469, 583, 694, 834
BccI	CCATC	5 cut(s)	688, 947, 1046, 1058, 1082
BceAI	ACGGC	3 cut(s)	191, 253, 507
BciT130I	CCWGG	3 cut(s)	520, 887, 1017
BcnI	CCSGG	3 cut(s)	349, 472, 473
BcoDI	GTCTC	2 cut(s)	446, 606
BfaI	CTAG	4 cut(s)	192, 654, 918, 971
BfoI	RGCGCY	3 cut(s)	198, 504, 946
BfuAI	ACCTGC	1 cut(s)	1116
BglI	GCCNNNNNGGC	1 cut(s)	831
Bme1390I	CCNGG	6 cut(s)	349, 472, 473, 520, 887, 1017
Bme18I	GGWCC	2 cut(s)	345, 407
BmeT110I	CYCGRG	3 cut(s)	286, 387, 471
BmgT120I	GGNCC	2 cut(s)	345, 407
BmiI	GGNNCC	3 cut(s)	205, 347, 409
BmrFI	CCNGG	6 cut(s)	349, 472, 473, 520, 887, 1017
BmrI	ACTGGG	1 cut(s)	712
BmsI	GCATC	3 cut(s)	744, 781, 1048
BmuI	ACTGGG	1 cut(s)	712
BpiI	GAAGAC	3 cut(s)	594, 755, 807
BpmI	CTGGAG	1 cut(s)	545
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	3 cut(s)	349, 472, 473
BsaHI	GRCGYC	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	446
BsaJI	CCNNGG	5 cut(s)	198, 246, 471, 504, 829
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 518, 548
Bsc4I	CCNNNNNNNGG	6 cut(s)	307, 331, 387, 472, 510, 1052
Bse1I	ACTGG	1 cut(s)	707
BseAI	TCCGGA	1 cut(s)	86
BseBI	CCWGG	3 cut(s)	520, 887, 1017
BseDI	CCNNGG	5 cut(s)	198, 246, 471, 504, 829
BseGI	GGATG	1 cut(s)	694
BseLI	CCNNNNNNNGG	6 cut(s)	307, 331, 387, 472, 510, 1052
BseNI	ACTGG	1 cut(s)	707
BseRI	GAGGAG	3 cut(s)	73, 521, 672
BseX3I	CGGCCG	1 cut(s)	53
BseXI	GCAGC	5 cut(s)	370, 469, 583, 694, 834
Bsh1236I	CGCG	3 cut(s)	52, 332, 843
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	4 cut(s)	55, 178, 352, 885
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	283
BsiHKCI	CYCGRG	3 cut(s)	286, 387, 471
BsiSI	CCGG	3 cut(s)	87, 349, 472
BslFI	GGGAC	2 cut(s)	331, 393
BslI	CCNNNNNNNGG	6 cut(s)	307, 331, 387, 472, 510, 1052
BsmAI	GTCTC	2 cut(s)	446, 606
BsmFI	GGGAC	2 cut(s)	331, 393
BsmI	GAATGC	1 cut(s)	672
BsnI	GGCC	4 cut(s)	55, 178, 352, 885
Bso31I	GGTCTC	1 cut(s)	446
BsoBI	CYCGRG	3 cut(s)	286, 387, 471
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp13I	TCCGGA	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	203, 457, 961
Bsp19I	CCATGG	1 cut(s)	829
BspANI	GGCC	4 cut(s)	55, 178, 352, 885
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	3 cut(s)	52, 332, 843
BspLI	GGNNCC	3 cut(s)	205, 347, 409
BspMI	ACCTGC	1 cut(s)	1116
BspPI	GGATC	3 cut(s)	198, 211, 956
BspTNI	GGTCTC	1 cut(s)	446
BsrBI	CCGCTC	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	707
BssECI	CCNNGG	5 cut(s)	198, 246, 471, 504, 829
BssMI	GATC	3 cut(s)	203, 457, 961
BssNI	GRCGYC	1 cut(s)	361
BssSI	CACGAG	1 cut(s)	1146
BssT1I	CCWWGG	1 cut(s)	829
Bst2BI	CACGAG	1 cut(s)	1146
Bst2UI	CCWGG	3 cut(s)	520, 887, 1017
Bst4CI	ACNGT	4 cut(s)	16, 101, 223, 619
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	361
BstC8I	GCNNGC	6 cut(s)	62, 283, 298, 559, 913, 987
BstDEI	CTNAG	2 cut(s)	150, 1152
BstDSI	CCRYGG	2 cut(s)	246, 829
BstF5I	GGATG	1 cut(s)	694
BstFNI	CGCG	3 cut(s)	52, 332, 843
BstH2I	RGCGCY	3 cut(s)	198, 504, 946
BstHHI	GCGC	4 cut(s)	52, 197, 503, 945
BstKTI	GATC	3 cut(s)	206, 460, 964
BstMAI	GTCTC	2 cut(s)	446, 606
BstMBI	GATC	3 cut(s)	203, 457, 961
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	8 cut(s)	28, 61, 237, 265, 491, 500, 831, 840
BstNI	CCWGG	3 cut(s)	520, 887, 1017
BstNSI	RCATGY	1 cut(s)	535
BstSCI	CCNGG	6 cut(s)	347, 470, 471, 518, 885, 1015
BstUI	CGCG	3 cut(s)	52, 332, 843
BstV1I	GCAGC	5 cut(s)	370, 469, 583, 694, 834
BstV2I	GAAGAC	3 cut(s)	594, 755, 807
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BstZI	CGGCCG	1 cut(s)	53
BsuRI	GGCC	4 cut(s)	55, 178, 352, 885
BtgI	CCRYGG	2 cut(s)	246, 829
BtsCI	GGATG	1 cut(s)	694
BveI	ACCTGC	1 cut(s)	1116
Cac8I	GCNNGC	6 cut(s)	62, 283, 298, 559, 913, 987
CfoI	GCGC	4 cut(s)	52, 197, 503, 945
Cfr13I	GGNCC	2 cut(s)	345, 407
Cfr9I	CCCGGG	1 cut(s)	471
CseI	GACGC	1 cut(s)	369
Csp6I	GTAC	2 cut(s)	318, 1092
CviAII	CATG	6 cut(s)	315, 339, 532, 819, 830, 853
CviQI	GTAC	2 cut(s)	318, 1092
DdeI	CTNAG	2 cut(s)	150, 1152
DpnI	GATC	3 cut(s)	205, 459, 963
DpnII	GATC	3 cut(s)	203, 457, 961
EaeI	YGGCCR	2 cut(s)	53, 883
EagI	CGGCCG	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
EciI	GGCGGA	1 cut(s)	556
EclXI	CGGCCG	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	829
Eco31I	GGTCTC	1 cut(s)	446
Eco47I	GGWCC	2 cut(s)	345, 407
Eco52I	CGGCCG	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	618
Eco88I	CYCGRG	3 cut(s)	286, 387, 471
EcoRII	CCWGG	3 cut(s)	518, 885, 1015
EcoT14I	CCWWGG	1 cut(s)	829
EcoT22I	ATGCAT	1 cut(s)	759
ErhI	CCWWGG	1 cut(s)	829
FaeI	CATG	6 cut(s)	318, 342, 535, 822, 833, 856
FaqI	GGGAC	2 cut(s)	331, 393
FatI	CATG	6 cut(s)	314, 338, 531, 818, 829, 852
FauI	CCCGC	1 cut(s)	1054
FauNDI	CATATG	1 cut(s)	759
FokI	GGATG	1 cut(s)	701
FspBI	CTAG	4 cut(s)	192, 654, 918, 971
GlaI	GCGC	4 cut(s)	51, 196, 502, 944
GsuI	CTGGAG	1 cut(s)	545
HaeII	RGCGCY	3 cut(s)	198, 504, 946
HaeIII	GGCC	4 cut(s)	55, 178, 352, 885
HapII	CCGG	3 cut(s)	87, 349, 472
HgaI	GACGC	1 cut(s)	369
HhaI	GCGC	4 cut(s)	52, 197, 503, 945
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	6 cut(s)	318, 342, 535, 822, 833, 856
Hin6I	GCGC	4 cut(s)	50, 195, 501, 943
HinP1I	GCGC	4 cut(s)	50, 195, 501, 943
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	4 cut(s)	550, 675, 869, 932
HpaII	CCGG	3 cut(s)	87, 349, 472
HphI	GGTGA	4 cut(s)	25, 635, 857, 1067
Hpy166II	GTNNAC	1 cut(s)	980
Hpy188I	TCNGA	3 cut(s)	598, 874, 1123
Hpy188III	TCNNGA	5 cut(s)	87, 389, 778, 866, 1103
Hpy8I	GTNNAC	1 cut(s)	980
Hpy99I	CGWCG	8 cut(s)	16, 177, 274, 277, 360, 363, 428, 493
HpyAV	CCTTC	4 cut(s)	87, 194, 593, 1064
HpyCH4III	ACNGT	4 cut(s)	16, 101, 223, 619
HpyCH4IV	ACGT	1 cut(s)	976
HpyCH4V	TGCA	4 cut(s)	757, 773, 822, 1061
HpyF10VI	GCNNNNNNNGC	8 cut(s)	28, 61, 237, 265, 491, 500, 831, 840
HpyF3I	CTNAG	2 cut(s)	150, 1152
HpySE526I	ACGT	1 cut(s)	976
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	6 cut(s)	318, 342, 535, 822, 833, 856
HspAI	GCGC	4 cut(s)	50, 195, 501, 943
Kpn2I	TCCGGA	1 cut(s)	86
Kzo9I	GATC	3 cut(s)	203, 457, 961
LmnI	GCTCC	3 cut(s)	473, 498, 856
Lsp1109I	GCAGC	5 cut(s)	370, 469, 583, 694, 834
LweI	GCATC	3 cut(s)	744, 781, 1048
MaeI	CTAG	4 cut(s)	192, 654, 918, 971
MaeII	ACGT	1 cut(s)	976
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	3 cut(s)	205, 459, 963
MbiI	CCGCTC	1 cut(s)	468
MboI	GATC	3 cut(s)	203, 457, 961
MboII	GAAGA	9 cut(s)	179, 361, 440, 596, 599, 675, 760, 807, 1134
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	283
MlsI	TGGCCA	1 cut(s)	885
MluCI	AATT	5 cut(s)	679, 728, 798, 1025, 1113
MluNI	TGGCCA	1 cut(s)	885
MlyI	GAGTC	1 cut(s)	926
Mox20I	TGGCCA	1 cut(s)	885
Mph1103I	ATGCAT	1 cut(s)	759
MroI	TCCGGA	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	679
MscI	TGGCCA	1 cut(s)	885
MseI	TTAA	1 cut(s)	797
MslI	CAYNNNNRTG	1 cut(s)	642
Msp20I	TGGCCA	1 cut(s)	885
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	3 cut(s)	87, 349, 472
MspR9I	CCNGG	6 cut(s)	349, 472, 473, 520, 887, 1017
Mva1269I	GAATGC	1 cut(s)	672
MvaI	CCWGG	3 cut(s)	520, 887, 1017
MvnI	CGCG	3 cut(s)	52, 332, 843
MwoI	GCNNNNNNNGC	8 cut(s)	28, 61, 237, 265, 491, 500, 831, 840
NciI	CCSGG	3 cut(s)	349, 472, 473
NcoI	CCATGG	1 cut(s)	829
NdeI	CATATG	1 cut(s)	759
NdeII	GATC	3 cut(s)	203, 457, 961
NlaIII	CATG	6 cut(s)	318, 342, 535, 822, 833, 856
NlaIV	GGNNCC	3 cut(s)	205, 347, 409
NmeAIII	GCCGAG	3 cut(s)	81, 223, 529
NsiI	ATGCAT	1 cut(s)	759
NspI	RCATGY	1 cut(s)	535
PciI	ACATGT	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	2 cut(s)	453, 982
PctI	GAATGC	1 cut(s)	672
PdmI	GAANNNNTTC	1 cut(s)	679
PfeI	GAWTC	3 cut(s)	550, 675, 869
PfoI	TCCNGGA	1 cut(s)	1015
PleI	GAGTC	1 cut(s)	926
PpsI	GAGTC	1 cut(s)	926
PscI	ACATGT	1 cut(s)	531
PsiI	TTATAA	1 cut(s)	1130
Psp6I	CCWGG	3 cut(s)	518, 885, 1015
PspGI	CCWGG	3 cut(s)	518, 885, 1015
PspN4I	GGNNCC	3 cut(s)	205, 347, 409
PspPI	GGNCC	2 cut(s)	345, 407
PsuI	RGATCY	1 cut(s)	203
RsaI	GTAC	2 cut(s)	319, 1093
RsaNI	GTAC	2 cut(s)	318, 1092
RseI	CAYNNNNRTG	1 cut(s)	642
SaqAI	TTAA	1 cut(s)	797
Sau3AI	GATC	3 cut(s)	203, 457, 961
Sau96I	GGNCC	2 cut(s)	345, 407
SchI	GAGTC	1 cut(s)	926
ScrFI	CCNGG	6 cut(s)	349, 472, 473, 520, 887, 1017
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	3 cut(s)	744, 781, 1048
SinI	GGWCC	2 cut(s)	345, 407
SmaI	CCCGGG	1 cut(s)	473
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	5 cut(s)	679, 728, 798, 1025, 1113
SspMI	CTAG	4 cut(s)	192, 654, 918, 971
StyD4I	CCNGG	6 cut(s)	347, 470, 471, 518, 885, 1015
StyI	CCWWGG	1 cut(s)	829
TaaI	ACNGT	4 cut(s)	16, 101, 223, 619
TaiI	ACGT	1 cut(s)	979
TaqI	TCGA	6 cut(s)	11, 142, 275, 355, 426, 478
TaqII	GACCGA	3 cut(s)	333, 395, 470
TasI	AATT	5 cut(s)	679, 728, 798, 1025, 1113
TatI	WGTACW	1 cut(s)	317
TauI	GCSGC	5 cut(s)	55, 234, 335, 383, 488
TfiI	GAWTC	3 cut(s)	550, 675, 869
Tru1I	TTAA	1 cut(s)	797
Tru9I	TTAA	1 cut(s)	797
TseI	GCWGC	5 cut(s)	383, 482, 571, 707, 822
TspDTI	ATGAA	4 cut(s)	303, 327, 807, 1019
TspMI	CCCGGG	1 cut(s)	471
VpaK11BI	GGWCC	2 cut(s)	345, 407
XapI	RAATTY	2 cut(s)	728, 1025
XceI	RCATGY	1 cut(s)	535
XmaI	CCCGGG	1 cut(s)	471
XmnI	GAANNNNTTC	1 cut(s)	679
XspI	CTAG	4 cut(s)	192, 654, 918, 971
Zsp2I	ATGCAT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.