Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013742

Physical Location & Seq

Genomic Coordinates Reverse (-)

44680619 .. 44682631

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009007

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGACAACCCAATATCCAAGCCTCGTCGACGACTCTAAGTCGTCGTTGCTGCTTCTAGAGAAAGGTTACTTTAGTCCGGCTCGCTACTTGGTCGAGGATGTCATCACTGGCTTTGATGAGACCGATCTCCACCGCTCTTGGGTTCGCGTGAGCAGCGGCGACGAGAGTCAGCAGGTTGGAAAATCTGTGCTGGCAGATTTGGAACTTGGCCAGAAGAAGCAGGCTACTGTGAAAGAAGAGGATGGAAATGATGTGTCTGTAACAGTCAGATTGTATGGCCCCAAAACTGATTATATTGCAAACACAGAGCTGGCAATCAAGTACCTCTCAGCTGCAGGGTTTGGAGCAAATTTGCTTGGAAATGGAATGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0046903 GO:0051179 GO:0051234 GO:0055044 GO:0071836 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

125

Amino Acids

13.52

Weight (kDa)

4.67

Isoelectric Point (pI)

25.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013742)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g05200
rosa_laevigata	RLG00000008892 RLG00000009007 RLG00000031273
rosa_multiflora	Rmu_co8486111.1_g000001 Rmu_sc0002299.1_g000008 Rmu_sc0003498.1_g000001 Rmu_sc0005141.1_g000004 Rmu_sc0036114.1_g000001
rosa_roxburghii	Rroxscaffold_1G00047660 Rroxscaffold_1G00051750 Rroxscaffold_2G00116530
rosa_samantha	Rh1DG048700 Rh1DG152800 Rh2CG637500 Rh2DG688300 Rh4AG247500 Rh7BG041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	163
AccBSI	CCGCTC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	147
AciI	CCGC	2 cut(s)	133, 156
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	349
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	139
AhdI	GACNNNNNGTC	1 cut(s)	37
AluBI	AGCT	2 cut(s)	310, 332
AluI	AGCT	2 cut(s)	310, 332
Alw26I	GTCTC	1 cut(s)	113
AoxI	GGCC	2 cut(s)	208, 277
ApeKI	GCWGC	3 cut(s)	49, 153, 332
ApoI	RAATTY	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	36, 165, 319
BccI	CCATC	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	163
BisI	GCNGC	4 cut(s)	50, 154, 157, 333
BlsI	GCNGC	4 cut(s)	51, 155, 158, 334
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	280
BoxI	GACNNNNGTC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	103, 247
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	3 cut(s)	36, 165, 319
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	210, 279
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	210, 279
Bso31I	GGTCTC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	2 cut(s)	133, 156
BspANI	GGCC	2 cut(s)	210, 279
BspCNI	CTCAG	1 cut(s)	341
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	280
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	112
BssMI	GATC	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	229, 265
Bst6I	CTCTTC	1 cut(s)	231
BstC8I	GCNNGC	4 cut(s)	82, 192, 222, 312
BstDEI	CTNAG	2 cut(s)	36, 328
BstF5I	GGATG	2 cut(s)	103, 247
BstFNI	CGCG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstPAI	GACNNNNGTC	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	333
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	3 cut(s)	36, 165, 319
BsuRI	GGCC	2 cut(s)	210, 279
BtsCI	GGATG	2 cut(s)	103, 247
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	4 cut(s)	82, 192, 222, 312
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	322
CspCI	CAANNNNNGTGG	2 cut(s)	119, 154
CviJI	RGCY	8 cut(s)	21, 80, 111, 210, 224, 279, 310, 332
CviKI_1	RGCY	8 cut(s)	21, 80, 111, 210, 224, 279, 310, 332
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	36, 328
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DriI	GACNNNNNGTC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	231
Eam1105I	GACNNNNNGTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	113
FaiI	YATR	2 cut(s)	276, 294
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	4 cut(s)	50, 154, 157, 333
FokI	GGATG	2 cut(s)	110, 254
Fsp4HI	GCNGC	4 cut(s)	50, 154, 157, 333
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	4 cut(s)	50, 154, 157, 333
HaeIII	GGCC	2 cut(s)	210, 279
HapII	CCGG	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	2 cut(s)	32, 166
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	4 cut(s)	29, 32, 46, 164
HpyCH4III	ACNGT	2 cut(s)	229, 265
HpyCH4V	TGCA	2 cut(s)	299, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpyF3I	CTNAG	2 cut(s)	36, 328
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	8 cut(s)	90, 93, 158, 176, 206, 224, 296, 321
Lsp1109I	GCAGC	3 cut(s)	36, 165, 319
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	65, 259
MalI	GATC	1 cut(s)	126
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	1 cut(s)	124
MboII	GAAGA	2 cut(s)	226, 248
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	1 cut(s)	349
MluNI	TGGCCA	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	26, 175
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	4 cut(s)	32, 88, 232, 335
Mox20I	TGGCCA	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	210
MspA1I	CMGCKG	2 cut(s)	156, 332
MspI	CCGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	153
NdeII	GATC	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	280
PkrI	GCNGC	4 cut(s)	51, 155, 158, 334
PleI	GAGTC	2 cut(s)	26, 174
PpsI	GAGTC	2 cut(s)	26, 174
PshAI	GACNNNNGTC	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SalI	GTCGAC	1 cut(s)	26
SatI	GCNGC	4 cut(s)	50, 154, 157, 333
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	2 cut(s)	26, 175
SetI	ASST	5 cut(s)	67, 177, 312, 327, 334
SfcI	CTRYAG	1 cut(s)	333
SgrDI	CGTCGACG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	2 cut(s)	133, 156
SspMI	CTAG	1 cut(s)	56
TaaI	ACNGT	2 cut(s)	229, 265
TaqI	TCGA	2 cut(s)	27, 93
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	1 cut(s)	349
TauI	GCSGC	1 cut(s)	159
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	3 cut(s)	49, 153, 332
TspRI	CASTG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	349
XbaI	TCTAGA	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.