Rh2DG688300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013742
Physical Location & Seq
Reverse (-)
90587679 .. 90587975
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG688300.1

Sequence Viewer

Length: 297 bp
ATGTTCTCTTTCTCTGACGAGTTTGTTCACTTCTCATTGTGGTTGTCATACATGGCATCGCTGACGAATAACCTCTCTGACGTGGGAAACTCTCCCTCGGCAGCAATTGTCGATTGCGCAGAGAAGCTCAGCGTTGGCCGGACAATCTCGATAGAGAGAAGCCTTGTTGCTGATCGGAGCGAAACGAGACGGCATCGTTTCAACACCTCCTCCTCTTTCTCCGGTGTTTTCTCTGATCTCGACGAAGATTCGAAGCAGATCTTAGCTCGGAAGATCCGTCATCGCATCGATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.12

Weight (kDa)

6.83

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 118
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 136
AgsI TTSAA 1 cut(s) 202
AjiI CACGTC 1 cut(s) 82
AluBI AGCT 2 cut(s) 127, 266
AluI AGCT 2 cut(s) 127, 266
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 1 cut(s) 268
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 119
AsuII TTCGAA 1 cut(s) 251
BbvI GCAGC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 181
BglII AGATCT 1 cut(s) 258
BisI GCNGC 1 cut(s) 102
BlpI GCTNAGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 103
BmgBI CACGTC 1 cut(s) 82
BmsI GCATC 2 cut(s) 65, 202
Bpu1102I GCTNAGC 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 142
BseRI GAGGAG 2 cut(s) 199, 202
BseXI GCAGC 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 1 cut(s) 138
BshVI ATCGAT 1 cut(s) 288
BsiEI CGRYCG 1 cut(s) 292
BsiSI CCGG 2 cut(s) 139, 222
BsmAI GTCTC 1 cut(s) 181
BsmBI CGTCTC 1 cut(s) 181
BsnI GGCC 1 cut(s) 138
Bsp119I TTCGAA 1 cut(s) 251
Bsp143I GATC 5 cut(s) 172, 235, 258, 273, 289
Bsp1720I GCTNAGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 141
BspDI ATCGAT 1 cut(s) 288
BspPI GGATC 1 cut(s) 268
BspT104I TTCGAA 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 5 cut(s) 172, 235, 258, 273, 289
BstBI TTCGAA 1 cut(s) 251
BstDEI CTNAG 2 cut(s) 128, 262
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 5 cut(s) 175, 238, 261, 276, 292
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 5 cut(s) 172, 235, 258, 273, 289
BstMCI CGRYCG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 113
BstX2I RGATCY 2 cut(s) 258, 273
BstYI RGATCY 2 cut(s) 258, 273
Bsu15I ATCGAT 1 cut(s) 288
BsuRI GGCC 1 cut(s) 138
BsuTUI ATCGAT 1 cut(s) 288
BtgZI GCGATG 2 cut(s) 42, 266
BtrI CACGTC 1 cut(s) 82
CfoI GCGC 1 cut(s) 119
ClaI ATCGAT 1 cut(s) 288
CviAII CATG 1 cut(s) 52
CviJI RGCY 4 cut(s) 127, 138, 162, 266
CviKI_1 RGCY 4 cut(s) 127, 138, 162, 266
DdeI CTNAG 2 cut(s) 128, 262
DpnI GATC 5 cut(s) 174, 237, 260, 275, 291
DpnII GATC 5 cut(s) 172, 235, 258, 273, 289
EaeI YGGCCR 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 1 cut(s) 55
FaiI YATR 2 cut(s) 49, 53
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
FspI TGCGCA 1 cut(s) 118
GlaI GCGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 102
HaeIII GGCC 1 cut(s) 138
HapII CCGG 2 cut(s) 139, 222
HhaI GCGC 1 cut(s) 119
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HinfI GANTC 1 cut(s) 248
HpaII CCGG 2 cut(s) 139, 222
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 5 cut(s) 16, 79, 177, 235, 270
Hpy188III TCNNGA 2 cut(s) 148, 239
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 81
HpyF3I CTNAG 2 cut(s) 128, 262
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 5 cut(s) 172, 235, 258, 273, 289
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 2 cut(s) 152, 235
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 2 cut(s) 65, 202
MaeII ACGT 1 cut(s) 81
MalI GATC 5 cut(s) 174, 237, 260, 275, 291
MboI GATC 5 cut(s) 172, 235, 258, 273, 289
MboII GAAGA 2 cut(s) 257, 283
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 2 cut(s) 258, 273
MluCI AATT 1 cut(s) 105
MnlI CCTC 5 cut(s) 83, 106, 217, 220, 223
MspI CCGG 2 cut(s) 139, 222
MunI CAATTG 1 cut(s) 105
NdeII GATC 5 cut(s) 172, 235, 258, 273, 289
NlaIII CATG 1 cut(s) 55
NmeAIII GCCGAG 1 cut(s) 77
NsbI TGCGCA 1 cut(s) 118
NspV TTCGAA 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 274
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 103
Ple19I CGATCG 1 cut(s) 292
PsuI RGATCY 2 cut(s) 258, 273
PvuI CGATCG 1 cut(s) 292
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 5 cut(s) 172, 235, 258, 273, 289
SetI ASST 5 cut(s) 75, 84, 129, 209, 268
SfaNI GCATC 2 cut(s) 65, 202
SfuI TTCGAA 1 cut(s) 251
Sse9I AATT 1 cut(s) 105
TaiI ACGT 1 cut(s) 84
TaqI TCGA 5 cut(s) 111, 149, 240, 251, 288
TasI AATT 1 cut(s) 105
TfiI GAWTC 1 cut(s) 248
TseI GCWGC 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.