Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013742

Physical Location & Seq

Genomic Coordinates Reverse (-)

41997564 .. 41998788

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008892

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCCGAAGGATACCAGAATGGCTGGGAACGACTGGATAAATAGTTGCCTGGAGGCGATTCTCGACGTCGGTCCAGGCCTCGTTGACGACGCTAAGTCGTCGTTGCTGCTTCGAGAGAAAGGTTACTTTAGTCCAGCTCGTTACTTGGTTGAGGATGTCATCACTGGCTTTGATGAGACCGATCTCCACCGCTCTTGGGTTCGCGCCGCGGCGACGAGAGTCAGCAGGTTGGAAAATTTGTGCTGGCGGATTTGGAACTTGGCCAGAAGAATACTGAAGGCTACTGTGAAAGAAGAGTATGGAAATGATGTGTCTGTAACAGTCAGATTGTATGGCCCAAACACTAATTACGTTGCAAACACAGAGCAGGCAATCAAGTACCTCACAGCTGTAGGGTTTGGTGCAAACTTGCTTGAAAATGGAATGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0046903 GO:0051179 GO:0051234 GO:0055044 GO:0071836 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

144

Amino Acids

16.06

Weight (kDa)

5.85

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013742)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g05200
rosa_laevigata	RLG00000008892 RLG00000009007 RLG00000031273
rosa_multiflora	Rmu_co8486111.1_g000001 Rmu_sc0002299.1_g000008 Rmu_sc0003498.1_g000001 Rmu_sc0005141.1_g000004 Rmu_sc0036114.1_g000001
rosa_roxburghii	Rroxscaffold_1G00047660 Rroxscaffold_1G00051750 Rroxscaffold_2G00116530
rosa_samantha	Rh1DG048700 Rh1DG152800 Rh2CG637500 Rh2DG688300 Rh4AG247500 Rh7BG041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
Acc36I	ACCTGC	1 cut(s)	216
AccBSI	CCGCTC	1 cut(s)	192
AccII	CGCG	2 cut(s)	204, 209
AciI	CCGC	4 cut(s)	190, 207, 209, 247
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	416
AhdI	GACNNNNNGTC	1 cut(s)	94
AjnI	CCWGG	2 cut(s)	48, 73
AluBI	AGCT	2 cut(s)	137, 389
AluI	AGCT	2 cut(s)	137, 389
Alw26I	GTCTC	1 cut(s)	170
AoxI	GGCC	3 cut(s)	76, 261, 334
ApeKI	GCWGC	1 cut(s)	106
ApoI	RAATTY	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	2 cut(s)	71, 335
AvaII	GGWCC	1 cut(s)	71
BalI	TGGCCA	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	93
BciT130I	CCWGG	2 cut(s)	50, 75
BciVI	GTATCC	1 cut(s)	4
BcoDI	GTCTC	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	4
BisI	GCNGC	3 cut(s)	107, 207, 210
BlsI	GCNGC	3 cut(s)	108, 208, 211
Bme1390I	CCNGG	2 cut(s)	50, 75
Bme18I	GGWCC	1 cut(s)	71
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	71, 335
BmrFI	CCNGG	2 cut(s)	50, 75
BoxI	GACNNNNGTC	2 cut(s)	69, 218
BpmI	CTGGAG	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	2 cut(s)	38, 169
BseBI	CCWGG	2 cut(s)	50, 75
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseNI	ACTGG	2 cut(s)	38, 169
BseXI	GCAGC	1 cut(s)	93
BseYI	CCCAGC	1 cut(s)	23
Bsh1236I	CGCG	2 cut(s)	204, 209
BshFI	GGCC	3 cut(s)	78, 263, 336
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	3 cut(s)	78, 263, 336
Bso31I	GGTCTC	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	4 cut(s)	190, 207, 209, 247
BspANI	GGCC	3 cut(s)	78, 263, 336
BspFNI	CGCG	2 cut(s)	204, 209
BspMI	ACCTGC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	38, 169
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	1 cut(s)	181
BssNI	GRCGYC	1 cut(s)	66
Bst2UI	CCWGG	2 cut(s)	50, 75
Bst4CI	ACNGT	2 cut(s)	286, 322
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	245, 369
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	2 cut(s)	204, 209
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	181
BstNI	CCWGG	2 cut(s)	50, 75
BstPAI	GACNNNNGTC	2 cut(s)	69, 218
BstSCI	CCNGG	2 cut(s)	48, 73
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	2 cut(s)	204, 209
BstV1I	GCAGC	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	78, 263, 336
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	245, 369
CfoI	GCGC	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	71, 335
Cfr42I	CCGCGG	1 cut(s)	210
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	379
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviJI	RGCY	8 cut(s)	23, 78, 137, 168, 263, 281, 336, 389
CviKI_1	RGCY	8 cut(s)	23, 78, 137, 168, 263, 281, 336, 389
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
DriI	GACNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	288
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	262
Eco147I	AGGCCT	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	48, 73
FaiI	YATR	2 cut(s)	300, 333
Fnu4HI	GCNGC	3 cut(s)	107, 207, 210
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	3 cut(s)	107, 207, 210
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	3 cut(s)	107, 207, 210
GsaI	CCCAGC	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	78, 263, 336
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	1 cut(s)	206
Hin1I	GRCGYC	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	58, 219
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	326
Hpy188III	TCNNGA	2 cut(s)	62, 113
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	5 cut(s)	68, 71, 92, 103, 217
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	286, 322
HpyCH4IV	ACGT	2 cut(s)	66, 351
HpyCH4V	TGCA	2 cut(s)	356, 404
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	2 cut(s)	66, 351
Hsp92I	GRCGYC	1 cut(s)	66
HspAI	GCGC	1 cut(s)	204
KspI	CCGCGG	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	181
Lsp1109I	GCAGC	1 cut(s)	93
MaeII	ACGT	2 cut(s)	66, 351
MaeIII	GTNAC	3 cut(s)	122, 140, 316
MalI	GATC	1 cut(s)	183
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	1 cut(s)	181
MboII	GAAGA	2 cut(s)	279, 305
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	2 cut(s)	235, 346
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	4 cut(s)	46, 89, 145, 392
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	209, 389
MspR9I	CCNGG	2 cut(s)	50, 75
MvaI	CCWGG	2 cut(s)	50, 75
MvnI	CGCG	2 cut(s)	204, 209
NdeII	GATC	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	108, 208, 211
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PshAI	GACNNNNGTC	2 cut(s)	69, 218
Psp6I	CCWGG	2 cut(s)	48, 73
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	2 cut(s)	48, 73
PspPI	GGNCC	2 cut(s)	71, 335
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SacII	CCGCGG	1 cut(s)	210
SatI	GCNGC	3 cut(s)	107, 207, 210
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	2 cut(s)	71, 335
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	2 cut(s)	50, 75
SetI	ASST	7 cut(s)	69, 124, 139, 230, 354, 384, 391
SfcI	CTRYAG	1 cut(s)	390
Sfr303I	CCGCGG	1 cut(s)	210
SgrBI	CCGCGG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	71
Sse9I	AATT	2 cut(s)	235, 346
SseBI	AGGCCT	1 cut(s)	78
SsiI	CCGC	4 cut(s)	190, 207, 209, 247
StuI	AGGCCT	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	48, 73
TaaI	ACNGT	2 cut(s)	286, 322
TaiI	ACGT	2 cut(s)	69, 354
TaqI	TCGA	2 cut(s)	63, 112
TaqII	GACCGA	2 cut(s)	59, 194
TasI	AATT	2 cut(s)	235, 346
TauI	GCSGC	2 cut(s)	209, 212
TfiI	GAWTC	1 cut(s)	58
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	1 cut(s)	106
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	235
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.