Rroxscaffold_2G00116530

Belongs to the glycosyltransferase 1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
43774993 .. 43785684
10692 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00116530.1

Sequence Viewer

Length: 267 bp
ATGAGAAAGGTCCAGGCCTCGACGACGGCGCTAAGTCGTCGTTGCTGCTCTAGGAGAAAAGTCACTTCGACGAGGTACTTCGTCGAGGAGGTTATCACCGGCTTCGATGAGACCAATCTCCACTGCTCTTGGTTGGCTTCACCGGAAAACTCATATGATGTTCATAACTTCAAACGATCATATCTCACTCATTTCTTATTCGTTCTCAATCTTATTTTTTTCGATGACCGGTTGTCTAAAATGTCTAAACTGCTTACTTTGGCATAG

Protein Analysis

88

Amino Acids

10.34

Weight (kDa)

9.45

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 77
AgeI ACCGGT 1 cut(s) 228
AgsI TTSAA 1 cut(s) 172
AhdI GACNNNNNGTC 1 cut(s) 232
AjnI CCWGG 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 104
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 45
AsiGI ACCGGT 1 cut(s) 228
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 88, 132
AvaII GGWCC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 32
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 10
BmeRI GACNNNNNGTC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 104
BsaWI WCCGGW 2 cut(s) 142, 228
Bse118I RCCGGY 2 cut(s) 98, 228
BseBI CCWGG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 32
BshFI GGCC 1 cut(s) 17
BshTI ACCGGT 1 cut(s) 228
BsiSI CCGG 3 cut(s) 99, 143, 229
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 1 cut(s) 17
Bso31I GGTCTC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 176
BspANI GGCC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 2 cut(s) 98, 228
BssAI RCCGGY 2 cut(s) 98, 228
BssMI GATC 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 32
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 1 cut(s) 179
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 32
BsuRI GGCC 1 cut(s) 17
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 121
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 2 cut(s) 98, 228
Cfr13I GGNCC 1 cut(s) 10
Csp6I GTAC 1 cut(s) 76
CspAI ACCGGT 1 cut(s) 228
CspCI CAANNNNNGTGG 2 cut(s) 110, 145
CviJI RGCY 3 cut(s) 17, 102, 137
CviKI_1 RGCY 3 cut(s) 17, 102, 137
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 32
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
DriI GACNNNNNGTC 1 cut(s) 232
Eam1105I GACNNNNNGTC 1 cut(s) 232
Eco147I AGGCCT 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 12
FaiI YATR 5 cut(s) 154, 156, 165, 181, 265
FauNDI CATATG 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 46
FspBI CTAG 1 cut(s) 51
GlaI GCGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 1 cut(s) 17
HapII CCGG 3 cut(s) 99, 143, 229
HhaI GCGC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HpaII CCGG 3 cut(s) 99, 143, 229
HphI GGTGA 2 cut(s) 88, 132
Hpy99I CGWCG 5 cut(s) 25, 28, 42, 73, 86
HpyF3I CTNAG 1 cut(s) 32
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 1 cut(s) 176
LpnPI CCDG 4 cut(s) 26, 112, 156, 242
Lsp1109I GCAGC 1 cut(s) 32
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 178
MboI GATC 1 cut(s) 176
MnlI CCTC 4 cut(s) 28, 66, 79, 82
MspI CCGG 3 cut(s) 99, 143, 229
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
NdeI CATATG 1 cut(s) 154
NdeII GATC 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 61
PceI AGGCCT 1 cut(s) 17
PinAI ACCGGT 1 cut(s) 228
PkrI GCNGC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspPI GGNCC 1 cut(s) 10
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 1 cut(s) 176
Sau96I GGNCC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 14
SetI ASST 3 cut(s) 12, 77, 93
SinI GGWCC 1 cut(s) 10
SseBI AGGCCT 1 cut(s) 17
SspMI CTAG 1 cut(s) 51
StuI AGGCCT 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 12
TaqI TCGA 5 cut(s) 20, 68, 84, 105, 222
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 10
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.