Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013742

Physical Location & Seq

Genomic Coordinates Reverse (-)

80866604 .. 80866849

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG637500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCATCGCTGACGAATAACCTCTCTGACGTGGGAAACTCTCCCTCGGCAGCAATTGTCGATTGCGCAGAGAAGCTCAGCGTTGGCCGGACAATCTCGATAGAGAGAAGCCTTGTTGCTGATCGGAGCGAAACGAGACGGCATCGTTTCAACACCTCCTCCTCTTTCTCCGGTGTTTTCTCTGATCTCGACGAAGATTCGAAGCAGATCTTAGCTCGGAAGATCCGTCATCGCATCGATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

8.99

Weight (kDa)

9.18

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013742)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g05200
rosa_laevigata	RLG00000008892 RLG00000009007 RLG00000031273
rosa_multiflora	Rmu_co8486111.1_g000001 Rmu_sc0002299.1_g000008 Rmu_sc0003498.1_g000001 Rmu_sc0005141.1_g000004 Rmu_sc0036114.1_g000001
rosa_roxburghii	Rroxscaffold_1G00047660 Rroxscaffold_1G00051750 Rroxscaffold_2G00116530
rosa_samantha	Rh1DG048700 Rh1DG152800 Rh2CG637500 Rh2DG688300 Rh4AG247500 Rh7BG041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	67
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	151
AjiI	CACGTC	1 cut(s)	31
AluBI	AGCT	2 cut(s)	76, 215
AluI	AGCT	2 cut(s)	76, 215
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	68
AsuII	TTCGAA	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	130
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	1 cut(s)	51
BlpI	GCTNAGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	52
BmgBI	CACGTC	1 cut(s)	31
BmsI	GCATC	2 cut(s)	14, 151
Bpu1102I	GCTNAGC	1 cut(s)	77
Bpu14I	TTCGAA	1 cut(s)	200
Bsa29I	ATCGAT	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	91
BseRI	GAGGAG	2 cut(s)	148, 151
BseXI	GCAGC	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	1 cut(s)	87
BshVI	ATCGAT	1 cut(s)	237
BsiEI	CGRYCG	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	88, 171
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	200
Bsp143I	GATC	5 cut(s)	121, 184, 207, 222, 238
Bsp1720I	GCTNAGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	90
BspDI	ATCGAT	1 cut(s)	237
BspPI	GGATC	1 cut(s)	217
BspT104I	TTCGAA	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	5 cut(s)	121, 184, 207, 222, 238
BstBI	TTCGAA	1 cut(s)	200
BstDEI	CTNAG	2 cut(s)	77, 211
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	5 cut(s)	124, 187, 210, 225, 241
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	5 cut(s)	121, 184, 207, 222, 238
BstMCI	CGRYCG	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	2 cut(s)	207, 222
BstYI	RGATCY	2 cut(s)	207, 222
Bsu15I	ATCGAT	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	215
BtrI	CACGTC	1 cut(s)	31
CfoI	GCGC	1 cut(s)	68
ClaI	ATCGAT	1 cut(s)	237
CviJI	RGCY	4 cut(s)	76, 87, 111, 215
CviKI_1	RGCY	4 cut(s)	76, 87, 111, 215
DdeI	CTNAG	2 cut(s)	77, 211
DpnI	GATC	5 cut(s)	123, 186, 209, 224, 240
DpnII	GATC	5 cut(s)	121, 184, 207, 222, 238
EaeI	YGGCCR	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	130
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
FspI	TGCGCA	1 cut(s)	67
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	2 cut(s)	88, 171
HhaI	GCGC	1 cut(s)	68
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	2 cut(s)	88, 171
Hpy188I	TCNGA	4 cut(s)	28, 126, 184, 219
Hpy188III	TCNNGA	2 cut(s)	97, 188
Hpy99I	CGWCG	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	30
HpyF3I	CTNAG	2 cut(s)	77, 211
HpySE526I	ACGT	1 cut(s)	30
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	5 cut(s)	121, 184, 207, 222, 238
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	2 cut(s)	101, 184
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	2 cut(s)	14, 151
MaeII	ACGT	1 cut(s)	30
MalI	GATC	5 cut(s)	123, 186, 209, 224, 240
MboI	GATC	5 cut(s)	121, 184, 207, 222, 238
MboII	GAAGA	2 cut(s)	206, 232
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	2 cut(s)	207, 222
MluCI	AATT	1 cut(s)	54
MnlI	CCTC	5 cut(s)	32, 55, 166, 169, 172
MspI	CCGG	2 cut(s)	88, 171
MunI	CAATTG	1 cut(s)	54
NdeII	GATC	5 cut(s)	121, 184, 207, 222, 238
NmeAIII	GCCGAG	1 cut(s)	26
NsbI	TGCGCA	1 cut(s)	67
NspV	TTCGAA	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	52
Ple19I	CGATCG	1 cut(s)	241
PsuI	RGATCY	2 cut(s)	207, 222
PvuI	CGATCG	1 cut(s)	241
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	5 cut(s)	121, 184, 207, 222, 238
SetI	ASST	5 cut(s)	24, 33, 78, 158, 217
SfaNI	GCATC	2 cut(s)	14, 151
SfuI	TTCGAA	1 cut(s)	200
SgeI	CNNG	9 cut(s)	43, 58, 100, 109, 125, 147, 183, 200, 228
Sse9I	AATT	1 cut(s)	54
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	5 cut(s)	60, 98, 189, 200, 237
TasI	AATT	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	50
TspGWI	ACGGA	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.