Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002299.1

Orthogroup ID

OG0013742

Physical Location & Seq

Genomic Coordinates Forward (+)

40368 .. 41450

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002299.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggccgggaacgactggataaacagttacctggaggcgattctcgacgtcggtcccggcctggtcgacgatgctaagtcgtcgttgctgcttcgggagagaggtcacttcagtccgacgaggtacttcgtggaggaggtcatcaccggcttcgatgagaccgatctccaccgctcttgggttcgcgccgcggcgacgaggagtccgcaggagaggaacaccaggttggagaatctgtgctggcggatttggaacttggctcgccagaagaagcaggaaaatgaatggataggtctggtggctttgtgtttcaaagagaggatgaatatcaagatgggcctttggcttttccacaagatagaggggttcgaaagctggtgtggtggtggtgagctggttgtggtgtttgttccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0046903 GO:0051179 GO:0051234 GO:0055044 GO:0071836 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

138

Amino Acids

16.01

Weight (kDa)

5.93

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013742)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g05200
rosa_laevigata	RLG00000008892 RLG00000009007 RLG00000031273
rosa_multiflora	Rmu_co8486111.1_g000001 Rmu_sc0002299.1_g000008 Rmu_sc0003498.1_g000001 Rmu_sc0005141.1_g000004 Rmu_sc0036114.1_g000001
rosa_roxburghii	Rroxscaffold_1G00047660 Rroxscaffold_1G00051750 Rroxscaffold_2G00116530
rosa_samantha	Rh1DG048700 Rh1DG152800 Rh2CG637500 Rh2DG688300 Rh4AG247500 Rh7BG041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
AccBSI	CCGCTC	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	2 cut(s)	186, 191
AciI	CCGC	5 cut(s)	172, 189, 191, 206, 244
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	94
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	313
AhdI	GACNNNNNGTC	1 cut(s)	201
AjnI	CCWGG	3 cut(s)	30, 60, 221
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	2 cut(s)	375, 394
AluI	AGCT	2 cut(s)	375, 394
Alw26I	GTCTC	1 cut(s)	152
AoxI	GGCC	3 cut(s)	3, 58, 337
ApeKI	GCWGC	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	53, 337
AsuC2I	CCSGG	2 cut(s)	7, 57
AsuHPI	GGTGA	2 cut(s)	136, 401
AsuII	TTCGAA	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	1 cut(s)	328
BciT130I	CCWGG	3 cut(s)	32, 62, 223
BcnI	CCSGG	2 cut(s)	7, 57
BcoDI	GTCTC	1 cut(s)	152
BisI	GCNGC	3 cut(s)	89, 189, 192
BlsI	GCNGC	3 cut(s)	90, 190, 193
Bme1390I	CCNGG	5 cut(s)	7, 32, 57, 62, 223
Bme18I	GGWCC	1 cut(s)	53
BmeRI	GACNNNNNGTC	1 cut(s)	201
BmgT120I	GGNCC	2 cut(s)	53, 337
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	5 cut(s)	7, 32, 57, 62, 223
BmsI	GCATC	1 cut(s)	61
BoxI	GACNNNNGTC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	369
BpuMI	CCSGG	2 cut(s)	7, 57
BsaBI	GATNNNNATC	1 cut(s)	326
BsaHI	GRCGYC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	326
BseBI	CCWGG	3 cut(s)	32, 62, 223
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	327
BseJI	GATNNNNATC	1 cut(s)	326
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	2 cut(s)	149, 214
BseXI	GCAGC	1 cut(s)	75
Bsh1236I	CGCG	2 cut(s)	186, 191
BshFI	GGCC	3 cut(s)	5, 60, 339
BsiSI	CCGG	3 cut(s)	6, 57, 147
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	5, 60, 339
Bso31I	GGTCTC	1 cut(s)	152
Bsp119I	TTCGAA	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	5 cut(s)	172, 189, 191, 206, 244
BspANI	GGCC	3 cut(s)	5, 60, 339
BspFNI	CGCG	2 cut(s)	186, 191
BspLI	GGNNCC	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	152
BsrBI	CCGCTC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	163
BssNI	GRCGYC	1 cut(s)	48
Bst2UI	CCWGG	3 cut(s)	32, 62, 223
Bst4CI	ACNGT	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	48
BstBI	TTCGAA	1 cut(s)	369
BstC8I	GCNNGC	2 cut(s)	242, 262
BstDEI	CTNAG	1 cut(s)	75
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	2 cut(s)	186, 191
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	163
BstNI	CCWGG	3 cut(s)	32, 62, 223
BstPAI	GACNNNNGTC	1 cut(s)	51
BstSCI	CCNGG	5 cut(s)	5, 30, 55, 60, 221
BstUI	CGCG	2 cut(s)	186, 191
BstV1I	GCAGC	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	5, 60, 339
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	242, 262
CfoI	GCGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	53, 337
Cfr42I	CCGCGG	1 cut(s)	192
CsiI	ACCWGGT	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	124
CspCI	CAANNNNNGTGG	2 cut(s)	158, 193
CviJI	RGCY	9 cut(s)	5, 60, 150, 260, 302, 339, 346, 375, 394
CviKI_1	RGCY	9 cut(s)	5, 60, 150, 260, 302, 339, 346, 375, 394
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
DriI	GACNNNNNGTC	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	94
EcoRII	CCWGG	3 cut(s)	30, 60, 221
FaqI	GGGAC	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	89, 189, 192
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	3 cut(s)	89, 189, 192
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	3 cut(s)	89, 189, 192
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	5, 60, 339
HapII	CCGG	3 cut(s)	6, 57, 147
HhaI	GCGC	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	40, 202, 232
HpaII	CCGG	3 cut(s)	6, 57, 147
HphI	GGTGA	2 cut(s)	136, 401
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	3 cut(s)	44, 95, 331
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	6 cut(s)	50, 53, 71, 85, 121, 199
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	48
HspAI	GCGC	1 cut(s)	186
KspI	CCGCGG	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	163
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	1 cut(s)	61
MabI	ACCWGGT	1 cut(s)	221
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	26, 104
MalI	GATC	1 cut(s)	165
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	1 cut(s)	163
MboII	GAAGA	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	2 cut(s)	140, 207
MnlI	CCTC	9 cut(s)	28, 95, 114, 127, 130, 192, 207, 312, 355
MseI	TTAA	1 cut(s)	415
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	3 cut(s)	6, 57, 147
MspR9I	CCNGG	5 cut(s)	7, 32, 57, 62, 223
MvaI	CCWGG	3 cut(s)	32, 62, 223
MvnI	CGCG	2 cut(s)	186, 191
NciI	CCSGG	2 cut(s)	7, 57
NdeII	GATC	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	40, 232
PkrI	GCNGC	3 cut(s)	90, 190, 193
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PshAI	GACNNNNGTC	1 cut(s)	51
Psp6I	CCWGG	3 cut(s)	30, 60, 221
PspGI	CCWGG	3 cut(s)	30, 60, 221
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	53, 337
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SacII	CCGCGG	1 cut(s)	192
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	3 cut(s)	89, 189, 192
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	2 cut(s)	53, 337
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	5 cut(s)	7, 32, 57, 62, 223
SetI	ASST	9 cut(s)	33, 51, 106, 125, 141, 227, 295, 377, 396
SexAI	ACCWGGT	1 cut(s)	221
SfaNI	GCATC	1 cut(s)	61
Sfr303I	CCGCGG	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	369
SgrBI	CCGCGG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	53
SsiI	CCGC	5 cut(s)	172, 189, 191, 206, 244
StyD4I	CCNGG	5 cut(s)	5, 30, 55, 60, 221
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	4 cut(s)	45, 66, 153, 369
TaqII	GACCGA	2 cut(s)	41, 176
TauI	GCSGC	2 cut(s)	191, 194
TfiI	GAWTC	2 cut(s)	40, 232
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	297, 338
VpaK11BI	GGWCC	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	66
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.