Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036114.1

Orthogroup ID

OG0013742

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 387

Gene Structure 386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036114.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 281 bp

atggcgggaaatgactgggtgaacagttacttagaggccattctcgacgtcggtcccggcctcgacgacgccaaatcgtcgtcgtcactgctgctccgggaacgaggtcgtttcagtcccactcgttacttcgtcgaagaggtcatcactcgctacgatgagactgatctccaccgctcctgggttcgagctgcggcgaccgcgaggagcgccgaggagaggaacaccaggctggagaacatgtgctggcggatttggaatcttgctcgcaaaaagaagca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008194 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0016020 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0035251 GO:0043062 GO:0044085 GO:0044464 GO:0045229 GO:0046524 GO:0046527 GO:0046903 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0071836 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

93

Amino Acids

10.85

Weight (kDa)

8.93

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013742)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g05200
rosa_laevigata	RLG00000008892 RLG00000009007 RLG00000031273
rosa_multiflora	Rmu_co8486111.1_g000001 Rmu_sc0002299.1_g000008 Rmu_sc0003498.1_g000001 Rmu_sc0005141.1_g000004 Rmu_sc0036114.1_g000001
rosa_roxburghii	Rroxscaffold_1G00047660 Rroxscaffold_1G00051750 Rroxscaffold_2G00116530
rosa_samantha	Rh1DG048700 Rh1DG152800 Rh2CG637500 Rh2DG688300 Rh4AG247500 Rh7BG041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
AccBSI	CCGCTC	1 cut(s)	177
AccII	CGCG	1 cut(s)	203
AciI	CCGC	5 cut(s)	5, 175, 194, 201, 250
AcyI	GRCGYC	2 cut(s)	48, 69
AfiI	CCNNNNNNNGG	2 cut(s)	181, 219
AflIII	ACRYGT	1 cut(s)	240
AjnI	CCWGG	2 cut(s)	179, 227
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw26I	GTCTC	1 cut(s)	155
AoxI	GGCC	2 cut(s)	36, 58
ApeKI	GCWGC	2 cut(s)	91, 191
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	2 cut(s)	57, 98
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	78, 178
BciT130I	CCWGG	2 cut(s)	181, 229
BcnI	CCSGG	2 cut(s)	57, 98
BcoDI	GTCTC	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	213
BisI	GCNGC	3 cut(s)	92, 192, 195
BlsI	GCNGC	3 cut(s)	93, 193, 196
Bme1390I	CCNGG	4 cut(s)	57, 98, 181, 229
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	4 cut(s)	57, 98, 181, 229
BmrI	ACTGGG	1 cut(s)	25
BmuI	ACTGGG	1 cut(s)	25
BoxI	GACNNNNGTC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	254
BpuMI	CCSGG	2 cut(s)	57, 98
BsaHI	GRCGYC	2 cut(s)	48, 69
BsaJI	CCNNGG	2 cut(s)	180, 213
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 227, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 219
Bse1I	ACTGG	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	181, 229
BseDI	CCNNGG	2 cut(s)	180, 213
BseLI	CCNNNNNNNGG	2 cut(s)	181, 219
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	2 cut(s)	220, 230
BseXI	GCAGC	2 cut(s)	78, 178
Bsh1236I	CGCG	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	38, 60
BsiEI	CGRYCG	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	57, 97
BslFI	GGGAC	2 cut(s)	39, 102
BslI	CCNNNNNNNGG	2 cut(s)	181, 219
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	39, 102
BsnI	GGCC	2 cut(s)	38, 60
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	5 cut(s)	5, 175, 194, 201, 250
BspANI	GGCC	2 cut(s)	38, 60
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	55
BsrBI	CCGCTC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	180, 213
BssMI	GATC	1 cut(s)	166
BssNI	GRCGYC	2 cut(s)	48, 69
Bst2UI	CCWGG	2 cut(s)	181, 229
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	2 cut(s)	48, 69
BstC8I	GCNNGC	2 cut(s)	248, 268
BstDEI	CTNAG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	166
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 209
BstNI	CCWGG	2 cut(s)	181, 229
BstNSI	RCATGY	1 cut(s)	244
BstPAI	GACNNNNGTC	1 cut(s)	51
BstSCI	CCNGG	4 cut(s)	55, 96, 179, 227
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	78, 178
BsuRI	GGCC	2 cut(s)	38, 60
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	248, 268
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	1 cut(s)	77
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	4 cut(s)	38, 60, 191, 232
CviKI_1	RGCY	4 cut(s)	38, 60, 191, 232
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	179, 227
FaeI	CATG	1 cut(s)	244
FaiI	YATR	1 cut(s)	242
FaqI	GGGAC	2 cut(s)	39, 102
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	3 cut(s)	92, 192, 195
Fsp4HI	GCNGC	3 cut(s)	92, 192, 195
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	92, 192, 195
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	38, 60
HapII	CCGG	2 cut(s)	57, 97
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	2 cut(s)	48, 69
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	1 cut(s)	259
HpaII	CCGG	2 cut(s)	57, 97
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	7 cut(s)	50, 53, 68, 71, 82, 85, 137
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 209
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	2 cut(s)	48, 69
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	3 cut(s)	99, 182, 207
LpnPI	CCDG	8 cut(s)	70, 110, 166, 193, 214, 218, 232, 241
Lsp1109I	GCAGC	2 cut(s)	78, 178
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	3 cut(s)	26, 84, 125
MalI	GATC	1 cut(s)	168
MbiI	CCGCTC	1 cut(s)	177
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	149
MnlI	CCTC	7 cut(s)	28, 71, 98, 133, 198, 208, 213
MspI	CCGG	2 cut(s)	57, 97
MspR9I	CCNGG	4 cut(s)	57, 98, 181, 229
MvaI	CCWGG	2 cut(s)	181, 229
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	200, 209
NciI	CCSGG	2 cut(s)	57, 98
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	55
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	84
NspI	RCATGY	1 cut(s)	244
PciI	ACATGT	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	259
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	3 cut(s)	93, 193, 196
PscI	ACATGT	1 cut(s)	240
PshAI	GACNNNNGTC	1 cut(s)	51
Psp6I	CCWGG	2 cut(s)	179, 227
PspGI	CCWGG	2 cut(s)	179, 227
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	53
SatI	GCNGC	3 cut(s)	92, 192, 195
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	4 cut(s)	57, 98, 181, 229
SetI	ASST	4 cut(s)	51, 109, 144, 193
SinI	GGWCC	1 cut(s)	53
SsiI	CCGC	5 cut(s)	5, 175, 194, 201, 250
StyD4I	CCNGG	4 cut(s)	55, 96, 179, 227
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	4 cut(s)	45, 63, 135, 187
TaqII	GACCGA	1 cut(s)	41
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	259
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	2 cut(s)	91, 191
Tsp45I	GTSAC	1 cut(s)	84
TspRI	CASTG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	53
XceI	RCATGY	1 cut(s)	244
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.