pycom04g05980

Phosphatidylinositol glycan anchor biosynthesis class U

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0009567
Physical Location & Seq
Reverse (-)
5853362 .. 5857562
4201 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1110 bp
ATGCAATGCTTATTCGTGCTAATGCTTATTCGTGCTACTGGTCAGACTCTTCAGGTTGCATACCGGCAGAGTTTGAAGTCACTAGATCTTGATACGACATTAGAAAGCATTGAGGTGCTCCCTTCTGGAGATATTGCTGCTCTTGTGTATCTATGGAATCCTTTCACGATAGTTGCATGTGTGGGTTTGTCAACATCTCCAATTGAGAATTTTGTGATCACACTGGCCTTGTATGGAGCATGTAAAAGACTGGTTCCCTTGGCTGCTTTTGGGTGGGTCATAGCAACACATCTGTCTCTTTATCCTATGATTCTCATAATTCCAATGATTCTTTTATTAGGATATGGTCCAGATACTCCAAGGAAACTGTTGCTACTGAGGAGATATGGTAATGTTGAAGATAACTCCTCAAGTGATAGTTGTCAACAACAGGAGAAAGTTATTAATCAATCAGAGCTACCCCGTGTTTTCTCTTGGAGACCTGTCGGACTGTTCTTATTGTGGGCTATTATGTGGTCAGCCTACGTGTTATTTCTCTGTGGTGTATCTGCTAAACAGTATGGTGATCTCTGGGAGATGTTTGAAAGACTGTATGGTTTCATTCTCACTGTGCAAGATTTGTCTCCAAATATAGGTGTCTTATGGTATTTCTTTGCAGAGGTCTTTGATTTTTTCAGAAATTTCTTCCTGATAGTTTTCCAAATGAATATTCTCTTTATGATAGTTCCATTGGCCATACGACTGAAGCATCGTCCGTGCTTTCTTGCTTTTATCTACATCACTATCTCCTCAATGCTTAAGTCTTATCCTTCTGTTGGGGATTCAGCTCTGTACTTTGGTTTGTTGGGCTGGTTTGTTAATGAACTGTCAGAAATGCGATTCTCGTCCTGCCTCTTCAGCGTTTATGTTGGCATTTCCCTCCTTAGCCCTGTGATGCACAACCTATGGATATGGAGGGGCACTGGCAATGCAAATTTCTACTTCGCTACTGCAATTACTTATGCTTGTTTGCAGATTGTTTTGGTGATTGAGAGTGTAAGTGCAATGCTCAATCATGACAGGAAGCTAAGAAAGCTATCAAACACAAAGATTCATGCTGACAAATCTTAA

Protein Analysis

370

Amino Acids

42.05

Weight (kDa)

8.35

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-U PF06728 22 - 334 2.7e-82 GPI transamidase subunit PIG-U
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12730 AT1G12730 AT1G63110 AT1G63110 AT1G63110
fragaria_vesca FvH4_5g01570 FvH4_5g01570
malus_domestica MD04G1066500.v1.1 MD06G1073700.v1.1
prunus_persica Prupe.5G091900_v2.0.a1
pyrus_communis pycom04g05980 pycom06g07290
rosa_chinensis RchiOBHm_Chr7g0199111
rosa_laevigata RLG00000003814
rosa_multiflora Rmu_sc0006266.1_g000049
rosa_roxburghii Rroxscaffold_3G00257070
rosa_rugosa Rorug07G0052700 Rorug07G0052800
rosa_samantha Rh7BG179700 Rh7DG179200
rosa_wichuraiana Rw7G015460 Rw7G015490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 3 cut(s) 208, 679, 973
AcuI CTGAAG 3 cut(s) 35, 764, 880
AfaI GTAC 1 cut(s) 833
AfiI CCNNNNNNNGG 2 cut(s) 632, 815
AflII CTTAAG 1 cut(s) 797
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 3 cut(s) 76, 398, 584
AjuI GAANNNNNNNTTGG 2 cut(s) 693, 725
AluBI AGCT 4 cut(s) 457, 827, 1066, 1075
AluI AGCT 4 cut(s) 457, 827, 1066, 1075
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 3 cut(s) 300, 472, 627
AoxI GGCC 2 cut(s) 225, 732
ApeKI GCWGC 2 cut(s) 137, 263
ApoI RAATTY 3 cut(s) 208, 679, 973
AseI ATTAAT 1 cut(s) 444
Asp700I GAANNNNTTC 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 575, 1036
AvaII GGWCC 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 962
BalI TGGCCA 1 cut(s) 734
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 124, 250
BclI TGATCA 1 cut(s) 216
BcoDI GTCTC 3 cut(s) 300, 472, 627
BfaI CTAG 1 cut(s) 83
BfrI CTTAAG 1 cut(s) 797
BglII AGATCT 1 cut(s) 85
BisI GCNGC 2 cut(s) 138, 264
BlsI GCNGC 2 cut(s) 139, 265
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 255
BmsI GCATC 2 cut(s) 757, 924
BpmI CTGGAG 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 923
BpuEI CTTGAG 1 cut(s) 394
BsaAI YACGTR 1 cut(s) 526
BsaI GGTCTC 1 cut(s) 472
BsaJI CCNNGG 2 cut(s) 258, 359
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 2 cut(s) 632, 815
Bse118I RCCGGY 1 cut(s) 63
Bse1I ACTGG 4 cut(s) 43, 228, 255, 967
Bse3DI GCAATG 3 cut(s) 11, 973, 1050
BseDI CCNNGG 2 cut(s) 258, 359
BseLI CCNNNNNNNGG 2 cut(s) 632, 815
BseMI GCAATG 3 cut(s) 11, 973, 1050
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 4 cut(s) 43, 228, 255, 967
BseRI GAGGAG 3 cut(s) 394, 397, 778
BseSI GKGCMC 1 cut(s) 962
BseXI GCAGC 2 cut(s) 124, 250
BshFI GGCC 2 cut(s) 227, 734
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 64
BslI CCNNNNNNNGG 2 cut(s) 632, 815
BsmAI GTCTC 3 cut(s) 300, 472, 627
BsnI GGCC 2 cut(s) 227, 734
Bso31I GGTCTC 1 cut(s) 472
Bsp1286I GDGCHC 2 cut(s) 120, 962
Bsp143I GATC 3 cut(s) 85, 216, 565
BspANI GGCC 2 cut(s) 227, 734
BspCNI CTCAG 1 cut(s) 369
BspHI TCATGA 1 cut(s) 1054
BspLI GGNNCC 1 cut(s) 255
BspTI CTTAAG 1 cut(s) 797
BspTNI GGTCTC 1 cut(s) 472
BsrDI GCAATG 3 cut(s) 11, 973, 1050
BsrFI RCCGGY 1 cut(s) 63
BsrI ACTGG 4 cut(s) 43, 228, 255, 967
BssAI RCCGGY 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 258, 359
BssMI GATC 3 cut(s) 85, 216, 565
BssT1I CCWWGG 2 cut(s) 258, 359
Bst4CI ACNGT 6 cut(s) 369, 492, 558, 591, 610, 867
Bst6I CTCTTC 2 cut(s) 54, 899
BstAFI CTTAAG 1 cut(s) 797
BstBAI YACGTR 1 cut(s) 526
BstDEI CTNAG 3 cut(s) 377, 923, 1067
BstKTI GATC 3 cut(s) 88, 219, 568
BstMAI GTCTC 3 cut(s) 300, 472, 627
BstMBI GATC 3 cut(s) 85, 216, 565
BstMWI GCNNNNNNNGC 2 cut(s) 897, 1072
BstNSI RCATGY 2 cut(s) 180, 243
BstSLI GKGCMC 1 cut(s) 962
BstV1I GCAGC 2 cut(s) 124, 250
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 2 cut(s) 227, 734
BtsIMutI CAGTG 3 cut(s) 221, 606, 960
CciI TCATGA 1 cut(s) 1054
Cfr10I RCCGGY 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 832
CviAII CATG 4 cut(s) 177, 240, 1055, 1094
CviQI GTAC 1 cut(s) 832
DdeI CTNAG 3 cut(s) 377, 923, 1067
DpnI GATC 3 cut(s) 87, 218, 567
DpnII GATC 3 cut(s) 85, 216, 565
EaeI YGGCCR 1 cut(s) 732
Eam1104I CTCTTC 2 cut(s) 54, 899
EarI CTCTTC 2 cut(s) 54, 899
Eco130I CCWWGG 2 cut(s) 258, 359
Eco31I GGTCTC 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 3 cut(s) 35, 764, 880
EcoT14I CCWWGG 2 cut(s) 258, 359
ErhI CCWWGG 2 cut(s) 258, 359
FaeI CATG 4 cut(s) 180, 243, 1058, 1097
FatI CATG 4 cut(s) 176, 239, 1054, 1093
FbaI TGATCA 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 138, 264
Fsp4HI GCNGC 2 cut(s) 138, 264
FspBI CTAG 1 cut(s) 83
GluI GCNGC 2 cut(s) 138, 264
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 2 cut(s) 227, 734
HapII CCGG 1 cut(s) 64
Hin1II CATG 4 cut(s) 180, 243, 1058, 1097
HincII GTYRAC 2 cut(s) 192, 425
HindII GTYRAC 2 cut(s) 192, 425
HinfI GANTC 7 cut(s) 46, 157, 310, 328, 821, 879, 1090
HpaII CCGG 1 cut(s) 64
HphI GGTGA 2 cut(s) 575, 1036
Hpy166II GTNNAC 2 cut(s) 192, 425
Hpy188I TCNGA 5 cut(s) 45, 454, 488, 677, 871
Hpy188III TCNNGA 6 cut(s) 89, 126, 166, 350, 688, 1055
Hpy8I GTNNAC 2 cut(s) 192, 425
HpyAV CCTTC 2 cut(s) 132, 819
HpyCH4III ACNGT 6 cut(s) 369, 492, 558, 591, 610, 867
HpyCH4IV ACGT 1 cut(s) 525
HpyF10VI GCNNNNNNNGC 2 cut(s) 897, 1072
HpyF3I CTNAG 3 cut(s) 377, 923, 1067
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 4 cut(s) 180, 243, 1058, 1097
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 3 cut(s) 85, 216, 565
LmnI GCTCC 2 cut(s) 123, 236
Lsp1109I GCAGC 2 cut(s) 124, 250
LweI GCATC 2 cut(s) 757, 924
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 1 cut(s) 78
MalI GATC 3 cut(s) 87, 218, 567
MboI GATC 3 cut(s) 85, 216, 565
MboII GAAGA 4 cut(s) 41, 410, 676, 886
MfeI CAATTG 1 cut(s) 201
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 2 cut(s) 120, 962
MlsI TGGCCA 1 cut(s) 734
MluCI AATT 6 cut(s) 201, 208, 318, 679, 973, 993
MluNI TGGCCA 1 cut(s) 734
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 466
MnlI CCTC 8 cut(s) 106, 372, 418, 652, 799, 902, 929, 948
Mox20I TGGCCA 1 cut(s) 734
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 734
MseI TTAA 4 cut(s) 444, 798, 858, 1108
MslI CAYNNNNRTG 1 cut(s) 113
Msp20I TGGCCA 1 cut(s) 734
MspCI CTTAAG 1 cut(s) 797
MspI CCGG 1 cut(s) 64
MunI CAATTG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 897, 1072
NdeII GATC 3 cut(s) 85, 216, 565
NlaIII CATG 4 cut(s) 180, 243, 1058, 1097
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 78
NspI RCATGY 2 cut(s) 180, 243
PagI TCATGA 1 cut(s) 1054
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 6 cut(s) 157, 310, 328, 821, 879, 1090
PkrI GCNGC 2 cut(s) 139, 265
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 526
PshBI ATTAAT 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 347
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 1 cut(s) 833
RsaNI GTAC 1 cut(s) 832
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 4 cut(s) 444, 798, 858, 1108
SatI GCNGC 2 cut(s) 138, 264
Sau3AI GATC 3 cut(s) 85, 216, 565
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 1 cut(s) 40
SduI GDGCHC 2 cut(s) 120, 962
SfaNI GCATC 2 cut(s) 757, 924
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 409, 797
SmoI CTYRAG 2 cut(s) 409, 797
Sse9I AATT 6 cut(s) 201, 208, 318, 679, 973, 993
SspI AATATT 1 cut(s) 709
SspMI CTAG 1 cut(s) 83
StyI CCWWGG 2 cut(s) 258, 359
TaaI ACNGT 6 cut(s) 369, 492, 558, 591, 610, 867
TaiI ACGT 1 cut(s) 528
TasI AATT 6 cut(s) 201, 208, 318, 679, 973, 993
TatI WGTACW 1 cut(s) 831
TfiI GAWTC 6 cut(s) 157, 310, 328, 821, 879, 1090
Tru1I TTAA 4 cut(s) 444, 798, 858, 1108
Tru9I TTAA 4 cut(s) 444, 798, 858, 1108
TscAI CASTG 3 cut(s) 228, 613, 967
TseFI GTSAC 1 cut(s) 78
TseI GCWGC 2 cut(s) 137, 263
Tsp45I GTSAC 1 cut(s) 78
TspDTI ATGAA 4 cut(s) 589, 719, 876, 1082
TspGWI ACGGA 1 cut(s) 744
TspRI CASTG 3 cut(s) 228, 613, 967
Vha464I CTTAAG 1 cut(s) 797
VpaK11BI GGWCC 1 cut(s) 347
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 3 cut(s) 208, 679, 973
XceI RCATGY 2 cut(s) 180, 243
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.