Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004774

Physical Location & Seq

Genomic Coordinates Forward (+)

19354062 .. 19355791

Gene Structure 1730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCAGTTATCTCTTGAAGAAACGCTTCTGACTATTCAGACAGTATATTTCCAAGTTGCCTTGCTATACACTGCATCCTGCGGAGAGAGGCGTATTAGAGTACATACAGCAGCAGTACCGGTGGTTACAGATCTGTCTGAGATGTATCGGCAGGCTGATACTGGTGCTATTGTCACCTTGCTTTCCAGGCTAGCAATTGAGAAAACTTTGTCCCATAAGTTGGAAGATGCTCGGAACTCTCTGCAGCTAAGAATTGTCAAAGCTCTCAAAGAATTTCGAAATCTCTATGCTGTACAACACCGCTTAGGAGGGAAGATGATATACTCAGAGTCTCTGAAGTTCTTGCCTTTGTATGGATTGGCACTTTGTAAATCAGCACCTCTTCGTGGGGGGTATGCAGACATGTCACTTGATGAGCGTTGTGCGGCAGGCCACACAATGATGACCTTACCAGTTAAAAAGTTGTTGAAGCTCCTATATCCCAGTTTAATACGGCTCGATGAGTATCTTTTGAACGCATCTTCTGAAGCTGATGACGTTAAAATCATAAAGAATAGGTTACCACTACTTGCCGAGAGCTTAGATTTCAGAGGCTTTTATTTATTCGATGATGGGTTTCGCCATGTTCTATGGTTTGGTAGAGTTCTTCCACCTGATATAGCTAAGAATCTACTTGGGCCTGACTTTGCAGCAGAGTTATCAAAGATCTGTTACCCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0006275 GO:0006996 GO:0007029 GO:0007030 GO:0007276 GO:0008150 GO:0008156 GO:0008361 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010256 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032504 GO:0032535 GO:0032875 GO:0032876 GO:0044703 GO:0045786 GO:0045934 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0080119 GO:0090066 GO:0090329 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

241

Amino Acids

27.1

Weight (kDa)

8.8

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec23_BS	PF08033	2 - 42	1.3e-09	Sec23/Sec24 beta-sandwich domain
Sec23_helical	PF04815	53 - 156	1.3e-24	Sec23/Sec24 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07100
fragaria_vesca	FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220
malus_domestica	MD04G1188900.v1.1 MD12G1201700.v1.1
prunus_persica	Prupe.6G306800_v2.0.a1 Prupe.6G306800_v2.0.a1 Prupe.6G306800_v2.0.a1
pyrus_communis	pycom04g16720 pycom04g16730 pycom12g18800 pycom12g18810
rosa_chinensis	RchiOBHm_Chr3g0458141
rosa_laevigata	RLG00000025175
rosa_multiflora	Rmu_sc0019452.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421270
rosa_rugosa	Rorug03G0024700 Rorug03G0024800 Rorug03G0024900 Rorug03G0024900 Rorug03G0025000
rosa_samantha	Rh3AG085700 Rh3BG088400 Rh3CG089000 Rh3DG089400
rosa_wichuraiana	Rw3G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	220
AciI	CCGC	3 cut(s)	81, 301, 425
AcsI	RAATTY	1 cut(s)	272
AcuI	CTGAAG	2 cut(s)	356, 546
AfaI	GTAC	3 cut(s)	102, 117, 294
AfiI	CCNNNNNNNGG	3 cut(s)	220, 353, 386
AflIII	ACRYGT	1 cut(s)	402
AgeI	ACCGGT	1 cut(s)	118
AgsI	TTSAA	3 cut(s)	17, 469, 514
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	6 cut(s)	247, 263, 472, 530, 579, 662
AluI	AGCT	6 cut(s)	247, 263, 472, 530, 579, 662
Alw26I	GTCTC	1 cut(s)	336
AoxI	GGCC	2 cut(s)	430, 677
ApeKI	GCWGC	3 cut(s)	110, 244, 689
ApoI	RAATTY	1 cut(s)	272
AsiGI	ACCGGT	1 cut(s)	118
Asp700I	GAANNNNTTC	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	677
AsuHPI	GGTGA	1 cut(s)	166
AsuII	TTCGAA	1 cut(s)	277
AsuNHI	GCTAGC	1 cut(s)	190
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BbvI	GCAGC	3 cut(s)	122, 256, 701
BccI	CCATC	1 cut(s)	605
BceAI	ACGGC	1 cut(s)	509
BciT130I	CCWGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	242
BglII	AGATCT	2 cut(s)	130, 705
BisI	GCNGC	4 cut(s)	111, 245, 426, 690
BlsI	GCNGC	4 cut(s)	112, 246, 427, 691
Bme1390I	CCNGG	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	677
BmrFI	CCNGG	1 cut(s)	187
BmrI	ACTGGG	1 cut(s)	477
BmsI	GCATC	3 cut(s)	83, 217, 527
BmtI	GCTAGC	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	304
Bpu14I	TTCGAA	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	504
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 353, 386
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	3 cut(s)	166, 452, 483
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	74
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	3 cut(s)	220, 353, 386
BseMII	CTCAG	2 cut(s)	129, 339
BseNI	ACTGG	3 cut(s)	166, 452, 483
BseXI	GCAGC	3 cut(s)	122, 256, 701
BshFI	GGCC	2 cut(s)	432, 679
BshTI	ACCGGT	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	3 cut(s)	220, 353, 386
BsmAI	GTCTC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	432, 679
Bsp119I	TTCGAA	1 cut(s)	277
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	130, 705
BspACI	CCGC	3 cut(s)	81, 301, 425
BspANI	GGCC	2 cut(s)	432, 679
BspCNI	CTCAG	2 cut(s)	130, 338
BspMAI	CTGCAG	1 cut(s)	246
BspOI	GCTAGC	1 cut(s)	194
BspT104I	TTCGAA	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	3 cut(s)	166, 452, 483
BssAI	RCCGGY	1 cut(s)	118
BssMI	GATC	2 cut(s)	130, 705
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	387
BstAUI	TGTACA	1 cut(s)	292
BstBI	TTCGAA	1 cut(s)	277
BstC8I	GCNNGC	3 cut(s)	153, 192, 430
BstDEI	CTNAG	6 cut(s)	138, 248, 304, 325, 580, 663
BstEII	GGTNACC	1 cut(s)	558
BstF5I	GGATG	1 cut(s)	74
BstKTI	GATC	2 cut(s)	133, 708
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	2 cut(s)	130, 705
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	187
BstNSI	RCATGY	1 cut(s)	406
BstPI	GGTNACC	1 cut(s)	558
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	242
BstV1I	GCAGC	3 cut(s)	122, 256, 701
BstX2I	RGATCY	2 cut(s)	130, 705
BstYI	RGATCY	2 cut(s)	130, 705
BsuRI	GGCC	2 cut(s)	432, 679
BtsCI	GGATG	1 cut(s)	74
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	3 cut(s)	153, 192, 430
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	677
Csp6I	GTAC	3 cut(s)	101, 116, 293
CspAI	ACCGGT	1 cut(s)	118
CviAII	CATG	2 cut(s)	403, 623
CviQI	GTAC	3 cut(s)	101, 116, 293
DdeI	CTNAG	6 cut(s)	138, 248, 304, 325, 580, 663
DpnI	GATC	2 cut(s)	132, 707
DpnII	GATC	2 cut(s)	130, 705
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco57I	CTGAAG	2 cut(s)	356, 546
Eco91I	GGTNACC	1 cut(s)	558
EcoO65I	GGTNACC	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	185
FaeI	CATG	2 cut(s)	406, 626
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	2 cut(s)	402, 622
Fnu4HI	GCNGC	4 cut(s)	111, 245, 426, 690
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	4 cut(s)	111, 245, 426, 690
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	4 cut(s)	111, 245, 426, 690
HaeIII	GGCC	2 cut(s)	432, 679
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	2 cut(s)	406, 626
HinfI	GANTC	2 cut(s)	329, 667
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	8 cut(s)	30, 39, 139, 234, 328, 336, 526, 590
Hpy188III	TCNNGA	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	5 cut(s)	4, 74, 244, 398, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	6 cut(s)	138, 248, 304, 325, 580, 663
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	2 cut(s)	406, 626
Kzo9I	GATC	2 cut(s)	130, 705
LmnI	GCTCC	1 cut(s)	477
Lsp1109I	GCAGC	3 cut(s)	122, 256, 701
LweI	GCATC	3 cut(s)	83, 217, 527
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	5 cut(s)	124, 172, 405, 558, 710
MalI	GATC	2 cut(s)	132, 707
MboI	GATC	2 cut(s)	130, 705
MboII	GAAGA	6 cut(s)	29, 236, 325, 374, 513, 638
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	2 cut(s)	130, 705
MluCI	AATT	3 cut(s)	195, 252, 272
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	81, 302, 390, 584
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	3 cut(s)	456, 488, 540
MslI	CAYNNNNRTG	1 cut(s)	440
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	187
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	187
NdeII	GATC	2 cut(s)	130, 705
NheI	GCTAGC	1 cut(s)	190
NlaIII	CATG	2 cut(s)	406, 626
NmeAIII	GCCGAG	1 cut(s)	598
NmuCI	GTSAC	2 cut(s)	172, 405
NspI	RCATGY	1 cut(s)	406
NspV	TTCGAA	1 cut(s)	277
PciI	ACATGT	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	667
PflMI	CCANNNNNTGG	1 cut(s)	220
PinAI	ACCGGT	1 cut(s)	118
PkrI	GCNGC	4 cut(s)	112, 246, 427, 691
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PscI	ACATGT	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	185
PspEI	GGTNACC	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	677
PstI	CTGCAG	1 cut(s)	246
PsuI	RGATCY	2 cut(s)	130, 705
RsaI	GTAC	3 cut(s)	102, 117, 294
RsaNI	GTAC	3 cut(s)	101, 116, 293
RseI	CAYNNNNRTG	1 cut(s)	440
SaqAI	TTAA	3 cut(s)	456, 488, 540
SatI	GCNGC	4 cut(s)	111, 245, 426, 690
Sau3AI	GATC	2 cut(s)	130, 705
Sau96I	GGNCC	1 cut(s)	677
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	187
SfaNI	GCATC	3 cut(s)	83, 217, 527
SfcI	CTRYAG	1 cut(s)	242
SfuI	TTCGAA	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	440
Sse9I	AATT	3 cut(s)	195, 252, 272
SsiI	CCGC	3 cut(s)	81, 301, 425
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	185
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	3 cut(s)	277, 498, 606
TasI	AATT	3 cut(s)	195, 252, 272
TatI	WGTACW	2 cut(s)	100, 292
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	1 cut(s)	667
Tru1I	TTAA	3 cut(s)	456, 488, 540
Tru9I	TTAA	3 cut(s)	456, 488, 540
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	2 cut(s)	172, 405
TseI	GCWGC	3 cut(s)	110, 244, 689
Tsp45I	GTSAC	2 cut(s)	172, 405
TspRI	CASTG	1 cut(s)	76
Van91I	CCANNNNNTGG	1 cut(s)	220
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.