Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004774

Physical Location & Seq

Genomic Coordinates Forward (+)

1963234 .. 1966845

Gene Structure 3612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0024800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGATAAGAGTTGGATCGATTTACACCAAGAAGATTGGGATAAATATGAGGCTGGGGTTGAAAGCTTTTTAGATTTTGCATTCGCCAACAGCATTGACGGTACAAGGATTTATTGTCCTTGTACGAAATGTCGTAACCGATACTTTAAGAAAAGGGACGATGCATGGGAAGATATAATGGTAGATGGGTTTTGGAAAACTTACAGAATTTGGGAGAAACATGGTGAAACTAAACCTTCGAGTACAAACCATGGTAGTAGGGGTAATTCTGGTTCGGTCATCAATGATGATATGGTTGGCATGATACATGAGGCAATGGGTATTCCTAATGTGAATTCTGGTTTAGGTGATGATCGTTCGACAGAAAGTGAACATGTTGAGGGCCCAAATGAGGAAGTTGTGAAATTTATTAAATTGCTTCAAGATGCAGAATGTCCTTTATATCCAAACTGTAAAAAGTTCACCAAACTATCATTCATTGTTCGATTGTTACAGTTGAAAGTTCTTTGTGGGTGGACAGATAAGTCGATGAATTTGTTGTTAGAGCTTCTGCAAGATTCTTATCCTGATGGAGTTCAGACACAACGACGAACTTTTAATACAGTATTTTCTGACGAAATCAACATTTTGGCTAATGGTACATTTAAGGAGGCTCGAAGGTTCAAAGGATATTTTATCAATGGCTTTCGATTTCGTACAAAGAGTAGAGAGAAAAAAAAGGCCACCCAAAATTCTGGTATTATGATGGATGCTGACACTATGAGTTATGCTAGTGCAAGAGATAGGAATCCTCGAGAAAGTGAGGAGAGATTCTATGGGGTATTAACAGATGTGCTTGAAATCCGCTATACCAATGACATGAAATTTGTCTTATTCAAGGGTGATTGGGTCAACAATCGAATGGGATTGAAAAAAGATGAGTTTAAATTCACACTTGTGAATTTTAATCATCTTATGTACAAAAACAATGTAGTAGGGGATGAACCTTTTATTTTCGCAGAACAAGCAAGACAAGTTTGTTATGTGCAGGACCCCTCTGATCCTAATTGGCATGTTGTTCTTCACATGACTGTTAGAGATCTGTTTGATATGTATTCGAAGGATTCTTCTCGTCGTCCAATAGAAGTGCCTCAAGTTGAATTATACGCTCAACAACAGTTGGATGAAACTGTATATCAAAATGATGCGGATGTTAGTTGGGTGAGAGAAGGAGTTGATGGAATAGAGGTGGATGCAAATGAACAAAGCATTGATGATGAAATGGAAGAATGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0006275 GO:0006996 GO:0007029 GO:0007030 GO:0007276 GO:0008150 GO:0008156 GO:0008361 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010256 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032504 GO:0032535 GO:0032875 GO:0032876 GO:0044703 GO:0045786 GO:0045934 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0080119 GO:0090066 GO:0090329 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

425

Amino Acids

49.5

Weight (kDa)

4.99

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transpos_assoc	PF13963	3 - 76	5.1e-19	Transposase-associated domain
DUF4216	PF13952	280 - 353	4.9e-21	Domain of unknown function (DUF4216)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07100
fragaria_vesca	FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220
malus_domestica	MD04G1188900.v1.1 MD12G1201700.v1.1
prunus_persica	Prupe.6G306800_v2.0.a1 Prupe.6G306800_v2.0.a1 Prupe.6G306800_v2.0.a1
pyrus_communis	pycom04g16720 pycom04g16730 pycom12g18800 pycom12g18810
rosa_chinensis	RchiOBHm_Chr3g0458141
rosa_laevigata	RLG00000025175
rosa_multiflora	Rmu_sc0019452.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421270
rosa_rugosa	Rorug03G0024700 Rorug03G0024800 Rorug03G0024900 Rorug03G0024900 Rorug03G0025000
rosa_samantha	Rh3AG085700 Rh3BG088400 Rh3CG089000 Rh3DG089400
rosa_wichuraiana	Rw3G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	523
AciI	CCGC	2 cut(s)	844, 1187
AclWI	GGATC	2 cut(s)	23, 1034
AcsI	RAATTY	8 cut(s)	207, 334, 404, 532, 730, 863, 926, 940
AfaI	GTAC	6 cut(s)	103, 124, 244, 640, 697, 959
AfiI	CCNNNNNNNGG	1 cut(s)	391
AflIII	ACRYGT	1 cut(s)	373
AgsI	TTSAA	8 cut(s)	62, 422, 499, 664, 839, 877, 910, 1139
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AleI	CACNNNNGTG	1 cut(s)	935
AluBI	AGCT	2 cut(s)	66, 547
AluI	AGCT	2 cut(s)	66, 547
AlwI	GGATC	2 cut(s)	23, 1034
Ama87I	CYCGRG	1 cut(s)	792
AoxI	GGCC	2 cut(s)	382, 720
ApaI	GGGCCC	1 cut(s)	386
ApoI	RAATTY	8 cut(s)	207, 334, 404, 532, 730, 863, 926, 940
ArsI	GACNNNNNNTTYG	2 cut(s)	848, 880
AspS9I	GGNCC	3 cut(s)	382, 383, 1030
AsuHPI	GGTGA	5 cut(s)	236, 359, 454, 893, 1213
AsuII	TTCGAA	1 cut(s)	1097
AvaI	CYCGRG	1 cut(s)	792
AvaII	GGWCC	1 cut(s)	1030
BaeGI	GKGCMC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	386
BccI	CCATC	4 cut(s)	179, 563, 739, 1211
BfaI	CTAG	1 cut(s)	771
BglII	AGATCT	1 cut(s)	1078
Bme18I	GGWCC	1 cut(s)	1030
BmeT110I	CYCGRG	1 cut(s)	792
BmgT120I	GGNCC	3 cut(s)	382, 383, 1030
BmiI	GGNNCC	2 cut(s)	384, 1032
BmsI	GCATC	5 cut(s)	151, 415, 739, 1174, 1222
Bpu14I	TTCGAA	1 cut(s)	1097
BpuEI	CTTGAG	1 cut(s)	1116
Bsa29I	ATCGAT	1 cut(s)	18
BsaBI	GATNNNNATC	2 cut(s)	561, 786
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	2 cut(s)	561, 786
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	5 cut(s)	754, 985, 1168, 1195, 1237
BseJI	GATNNNNATC	2 cut(s)	561, 786
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMI	GCAATG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	818
BseSI	GKGCMC	1 cut(s)	386
BseYI	CCCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	1046
BshFI	GGCC	2 cut(s)	384, 722
BshVI	ATCGAT	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	792
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	2 cut(s)	80, 1274
BsnI	GGCC	2 cut(s)	384, 722
BsoBI	CYCGRG	1 cut(s)	792
Bsp119I	TTCGAA	1 cut(s)	1097
Bsp120I	GGGCCC	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp1407I	TGTACA	1 cut(s)	957
Bsp143I	GATC	4 cut(s)	15, 352, 1039, 1078
Bsp19I	CCATGG	1 cut(s)	250
BspACI	CCGC	2 cut(s)	844, 1187
BspANI	GGCC	2 cut(s)	384, 722
BspDI	ATCGAT	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	384, 1032
BspPI	GGATC	2 cut(s)	23, 1034
BspT104I	TTCGAA	1 cut(s)	1097
BsrDI	GCAATG	1 cut(s)	321
BsrGI	TGTACA	1 cut(s)	957
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	4 cut(s)	15, 352, 1039, 1078
BssT1I	CCWWGG	1 cut(s)	250
Bst4CI	ACNGT	7 cut(s)	101, 452, 495, 604, 1072, 1158, 1171
BstAUI	TGTACA	1 cut(s)	957
BstBI	TTCGAA	1 cut(s)	1097
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	5 cut(s)	754, 985, 1168, 1195, 1237
BstKTI	GATC	4 cut(s)	18, 355, 1042, 1081
BstMBI	GATC	4 cut(s)	15, 352, 1039, 1078
BstMWI	GCNNNNNNNGC	1 cut(s)	1004
BstNSI	RCATGY	2 cut(s)	377, 1055
BstSLI	GKGCMC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	1078
BstXI	CCANNNNNNTGG	1 cut(s)	734
BstYI	RGATCY	1 cut(s)	1078
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	384, 722
BsuTUI	ATCGAT	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	5 cut(s)	754, 985, 1168, 1195, 1237
Cfr13I	GGNCC	3 cut(s)	382, 383, 1030
ClaI	ATCGAT	1 cut(s)	18
Csp6I	GTAC	6 cut(s)	102, 123, 243, 639, 696, 958
CviAII	CATG	9 cut(s)	165, 221, 251, 301, 308, 374, 859, 1052, 1066
CviJI	RGCY	8 cut(s)	53, 66, 384, 547, 632, 653, 684, 722
CviKI_1	RGCY	8 cut(s)	53, 66, 384, 547, 632, 653, 684, 722
CviQI	GTAC	6 cut(s)	102, 123, 243, 639, 696, 958
DpnI	GATC	4 cut(s)	17, 354, 1041, 1080
DpnII	GATC	4 cut(s)	15, 352, 1039, 1078
DraI	TTTAAA	1 cut(s)	925
DrdI	GACNNNNNNGTC	1 cut(s)	523
DseDI	GACNNNNNNGTC	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	1030
Eco88I	CYCGRG	1 cut(s)	792
EcoO109I	RGGNCCY	2 cut(s)	382, 1030
EcoRI	GAATTC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	9 cut(s)	168, 224, 254, 304, 311, 377, 862, 1055, 1069
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	9 cut(s)	164, 220, 250, 300, 307, 373, 858, 1051, 1065
FokI	GGATG	5 cut(s)	761, 992, 1175, 1202, 1244
FriOI	GRGCYC	1 cut(s)	386
FspBI	CTAG	1 cut(s)	771
GsaI	CCCAGC	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	384, 722
Hin1II	CATG	9 cut(s)	168, 224, 254, 304, 311, 377, 862, 1055, 1069
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	4 cut(s)	557, 787, 810, 1103
HphI	GGTGA	5 cut(s)	236, 359, 454, 893, 1213
Hpy166II	GTNNAC	4 cut(s)	371, 462, 516, 892
Hpy188I	TCNGA	3 cut(s)	579, 613, 1039
Hpy188III	TCNNGA	3 cut(s)	422, 566, 794
Hpy8I	GTNNAC	4 cut(s)	371, 462, 516, 892
Hpy99I	CGWCG	2 cut(s)	591, 1116
HpyAV	CCTTC	4 cut(s)	246, 651, 1093, 1202
HpyCH4III	ACNGT	7 cut(s)	101, 452, 495, 604, 1072, 1158, 1171
HpyCH4V	TGCA	7 cut(s)	80, 164, 428, 553, 776, 1027, 1235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1004
Hsp92II	CATG	9 cut(s)	168, 224, 254, 304, 311, 377, 862, 1055, 1069
Kzo9I	GATC	4 cut(s)	15, 352, 1039, 1078
LpnPI	CCDG	6 cut(s)	39, 255, 324, 579, 720, 1013
LweI	GCATC	5 cut(s)	151, 415, 739, 1174, 1222
MaeI	CTAG	1 cut(s)	771
MaeIII	GTNAC	2 cut(s)	134, 489
MalI	GATC	4 cut(s)	17, 354, 1041, 1080
MboI	GATC	4 cut(s)	15, 352, 1039, 1078
MboII	GAAGA	5 cut(s)	44, 182, 1052, 1098, 1277
MflI	RGATCY	1 cut(s)	1078
MhlI	GDGCHC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	1140
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	7 cut(s)	147, 411, 597, 645, 824, 924, 945
MslI	CAYNNNNRTG	1 cut(s)	935
Mva1269I	GAATGC	2 cut(s)	80, 1274
MwoI	GCNNNNNNNGC	1 cut(s)	1004
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	4 cut(s)	15, 352, 1039, 1078
NlaIII	CATG	9 cut(s)	168, 224, 254, 304, 311, 377, 862, 1055, 1069
NlaIV	GGNNCC	2 cut(s)	384, 1032
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	2 cut(s)	377, 1055
NspV	TTCGAA	1 cut(s)	1097
OliI	CACNNNNGTG	1 cut(s)	935
PaeR7I	CTCGAG	1 cut(s)	792
PciI	ACATGT	1 cut(s)	373
PctI	GAATGC	2 cut(s)	80, 1274
PfeI	GAWTC	4 cut(s)	557, 787, 810, 1103
PpuMI	RGGWCCY	1 cut(s)	1030
PscI	ACATGT	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	1030
PspFI	CCCAGC	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	384, 1032
PspOMI	GGGCCC	1 cut(s)	382
PspPI	GGNCC	3 cut(s)	382, 383, 1030
PspPPI	RGGWCCY	1 cut(s)	1030
PsrI	GAACNNNNNNTAC	4 cut(s)	256, 288, 583, 615
PsuI	RGATCY	1 cut(s)	1078
RsaI	GTAC	6 cut(s)	103, 124, 244, 640, 697, 959
RsaNI	GTAC	6 cut(s)	102, 123, 243, 639, 696, 958
RseI	CAYNNNNRTG	1 cut(s)	935
SaqAI	TTAA	7 cut(s)	147, 411, 597, 645, 824, 924, 945
Sau3AI	GATC	4 cut(s)	15, 352, 1039, 1078
Sau96I	GGNCC	3 cut(s)	382, 383, 1030
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	7 cut(s)	68, 238, 349, 549, 662, 988, 1230
SfaNI	GCATC	5 cut(s)	151, 415, 739, 1174, 1222
Sfr274I	CTCGAG	1 cut(s)	792
SfuI	TTCGAA	1 cut(s)	1097
SinI	GGWCC	1 cut(s)	1030
SlaI	CTCGAG	1 cut(s)	792
SmiMI	CAYNNNNRTG	1 cut(s)	935
SmlI	CTYRAG	2 cut(s)	792, 1131
SmoI	CTYRAG	2 cut(s)	792, 1131
SsiI	CCGC	2 cut(s)	844, 1187
SspMI	CTAG	1 cut(s)	771
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	7 cut(s)	101, 452, 495, 604, 1072, 1158, 1171
TaqII	GACCGA	1 cut(s)	265
TatI	WGTACW	2 cut(s)	242, 957
TfiI	GAWTC	4 cut(s)	557, 787, 810, 1103
Tru1I	TTAA	7 cut(s)	147, 411, 597, 645, 824, 924, 945
Tru9I	TTAA	7 cut(s)	147, 411, 597, 645, 824, 924, 945
TspDTI	ATGAA	7 cut(s)	466, 545, 875, 996, 1179, 1254, 1272
VpaK11BI	GGWCC	1 cut(s)	1030
XapI	RAATTY	8 cut(s)	207, 334, 404, 532, 730, 863, 926, 940
XceI	RCATGY	2 cut(s)	377, 1055
XhoI	CTCGAG	1 cut(s)	792
XspI	CTAG	1 cut(s)	771
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.