Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004774

Physical Location & Seq

Genomic Coordinates Forward (+)

1970703 .. 1971122

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0025000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAACTTAAGACCTTGGTAATTTTTCTCGGAGAAAGATATATCCCGGCCTGGGTTATAGCATGCCTATTTAAGAGCTCTCCTATAGTCCACAACCTCAGGATTAATCTTTGCATGTACTCTTTTGAAGAAAATGATGAGTGGAACGACTTGGATAACGCCAACTGCACTGAAGAGCAATACTGGGAGACTCGAGCTCGATATTTGAGCCCCTTTCTTAGTCACCTAAAGGTGGTCGACATTAACCTTGGCAACATGATCCCTGAGAATGCAGAGTTTTTCCTTAAATATGGAAGAGGCTTGCAAAAAGTGATTCTTAGATTTCGTAGGGGCAAAAGTACTCTACCTCCCAATTTGCTGAAGGATACCATTGCTTTAATGGAGGGTATCCCCCGGGCATCTGCCGATGTTGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0006275 GO:0006996 GO:0007029 GO:0007030 GO:0007276 GO:0008150 GO:0008156 GO:0008361 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010256 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032504 GO:0032535 GO:0032875 GO:0032876 GO:0044703 GO:0045786 GO:0045934 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0080119 GO:0090066 GO:0090329 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

139

Amino Acids

16.14

Weight (kDa)

6.73

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07100
fragaria_vesca	FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220
malus_domestica	MD04G1188900.v1.1 MD12G1201700.v1.1
prunus_persica	Prupe.6G306800_v2.0.a1 Prupe.6G306800_v2.0.a1 Prupe.6G306800_v2.0.a1
pyrus_communis	pycom04g16720 pycom04g16730 pycom12g18800 pycom12g18810
rosa_chinensis	RchiOBHm_Chr3g0458141
rosa_laevigata	RLG00000025175
rosa_multiflora	Rmu_sc0019452.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421270
rosa_rugosa	Rorug03G0024700 Rorug03G0024800 Rorug03G0024900 Rorug03G0024900 Rorug03G0025000
rosa_samantha	Rh3AG085700 Rh3BG088400 Rh3CG089000 Rh3DG089400
rosa_wichuraiana	Rw3G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	237
AclWI	GGATC	1 cut(s)	253
AcuI	CTGAAG	2 cut(s)	192, 380
AfaI	GTAC	2 cut(s)	119, 340
AfiI	CCNNNNNNNGG	2 cut(s)	52, 232
AflII	CTTAAG	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	128, 413
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	78, 197
AluI	AGCT	2 cut(s)	78, 197
Alw21I	GWGCWC	2 cut(s)	80, 199
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	253
Ama87I	CYCGRG	2 cut(s)	192, 393
AoxI	GGCC	1 cut(s)	48
AseI	ATTAAT	1 cut(s)	105
AsuC2I	CCSGG	3 cut(s)	47, 394, 395
AsuHPI	GGTGA	1 cut(s)	215
AvaI	CYCGRG	2 cut(s)	192, 393
AxyI	CCTNAGG	1 cut(s)	98
BanII	GRGCYC	3 cut(s)	80, 199, 212
Bbv12I	GWGCWC	2 cut(s)	80, 199
BciT130I	CCWGG	1 cut(s)	52
BciVI	GTATCC	2 cut(s)	358, 398
BcnI	CCSGG	3 cut(s)	47, 394, 395
BcoDI	GTCTC	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	8
BfuI	GTATCC	2 cut(s)	358, 398
BmcAI	AGTACT	1 cut(s)	340
Bme1390I	CCNGG	4 cut(s)	47, 52, 394, 395
BmeT110I	CYCGRG	2 cut(s)	192, 393
BmrFI	CCNGG	4 cut(s)	47, 52, 394, 395
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	193
BpuMI	CCSGG	3 cut(s)	47, 394, 395
BsaJI	CCNNGG	5 cut(s)	15, 51, 247, 392, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 232
Bse1I	ACTGG	1 cut(s)	188
Bse21I	CCTNAGG	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	5 cut(s)	15, 51, 247, 392, 393
BseLI	CCNNNNNNNGG	2 cut(s)	52, 232
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	2 cut(s)	112, 255
BseNI	ACTGG	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	2 cut(s)	80, 199
BsiHKCI	CYCGRG	2 cut(s)	192, 393
BsiSI	CCGG	2 cut(s)	47, 394
BslI	CCNNNNNNNGG	2 cut(s)	52, 232
BsmAI	GTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	50
BsoBI	CYCGRG	2 cut(s)	192, 393
Bsp1286I	GDGCHC	3 cut(s)	80, 199, 212
Bsp143I	GATC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	111, 256
BspPI	GGATC	1 cut(s)	253
BspQI	GCTCTTC	1 cut(s)	168
BspTI	CTTAAG	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	5 cut(s)	15, 51, 247, 392, 393
BssMI	GATC	1 cut(s)	258
BssT1I	CCWWGG	2 cut(s)	15, 247
Bst2UI	CCWGG	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	168, 289
BstAFI	CTTAAG	1 cut(s)	8
BstC8I	GCNNGC	2 cut(s)	64, 302
BstDEI	CTNAG	4 cut(s)	98, 218, 264, 317
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	2 cut(s)	66, 118
BstSCI	CCNGG	4 cut(s)	45, 50, 392, 393
BstSFI	CTRYAG	1 cut(s)	84
Bsu36I	CCTNAGG	1 cut(s)	98
BsuI	GTATCC	2 cut(s)	358, 398
BsuRI	GGCC	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	64, 302
Cfr9I	CCCGGG	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	118, 339
CviAII	CATG	3 cut(s)	63, 115, 256
CviJI	RGCY	5 cut(s)	50, 78, 197, 210, 300
CviKI_1	RGCY	5 cut(s)	50, 78, 197, 210, 300
CviQI	GTAC	2 cut(s)	118, 339
DdeI	CTNAG	4 cut(s)	98, 218, 264, 317
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
Eam1104I	CTCTTC	2 cut(s)	168, 289
EarI	CTCTTC	2 cut(s)	168, 289
Ecl136II	GAGCTC	2 cut(s)	78, 197
Eco130I	CCWWGG	2 cut(s)	15, 247
Eco24I	GRGCYC	3 cut(s)	80, 199, 212
Eco53kI	GAGCTC	2 cut(s)	78, 197
Eco57I	CTGAAG	2 cut(s)	192, 380
Eco81I	CCTNAGG	1 cut(s)	98
Eco88I	CYCGRG	2 cut(s)	192, 393
EcoICRI	GAGCTC	2 cut(s)	78, 197
EcoRII	CCWGG	1 cut(s)	50
EcoT14I	CCWWGG	2 cut(s)	15, 247
EcoT38I	GRGCYC	3 cut(s)	80, 199, 212
ErhI	CCWWGG	2 cut(s)	15, 247
FaeI	CATG	3 cut(s)	66, 118, 259
FaiI	YATR	7 cut(s)	42, 59, 64, 86, 116, 257, 291
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	3 cut(s)	62, 114, 255
FblI	GTMKAC	1 cut(s)	237
FriOI	GRGCYC	3 cut(s)	80, 199, 212
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	2 cut(s)	47, 394
Hin1II	CATG	3 cut(s)	66, 118, 259
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	190, 313
HpaII	CCGG	2 cut(s)	47, 394
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	91, 238
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	2 cut(s)	91, 238
HpyAV	CCTTC	1 cut(s)	355
HpyCH4V	TGCA	4 cut(s)	114, 168, 272, 304
HpyF3I	CTNAG	4 cut(s)	98, 218, 264, 317
Hsp92II	CATG	3 cut(s)	66, 118, 259
Kzo9I	GATC	1 cut(s)	258
LguI	GCTCTTC	1 cut(s)	168
LpnPI	CCDG	7 cut(s)	37, 60, 64, 85, 169, 276, 407
LweI	GCATC	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	3 cut(s)	140, 185, 306
MhlI	GDGCHC	3 cut(s)	80, 199, 212
MluCI	AATT	2 cut(s)	21, 352
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	4 cut(s)	107, 290, 357, 376
MseI	TTAA	6 cut(s)	9, 72, 105, 243, 285, 377
MspCI	CTTAAG	1 cut(s)	8
MspI	CCGG	2 cut(s)	47, 394
MspR9I	CCNGG	4 cut(s)	47, 52, 394, 395
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	52
NciI	CCSGG	3 cut(s)	47, 394, 395
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	3 cut(s)	66, 118, 259
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	2 cut(s)	66, 118
PaeI	GCATGC	1 cut(s)	66
PaeR7I	CTCGAG	1 cut(s)	192
PciSI	GCTCTTC	1 cut(s)	168
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	313
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PshBI	ATTAAT	1 cut(s)	105
Psp124BI	GAGCTC	2 cut(s)	80, 199
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspXI	VCTCGAGB	1 cut(s)	192
RsaI	GTAC	2 cut(s)	119, 340
RsaNI	GTAC	2 cut(s)	118, 339
SacI	GAGCTC	2 cut(s)	80, 199
SalI	GTCGAC	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	6 cut(s)	9, 72, 105, 243, 285, 377
Sau3AI	GATC	1 cut(s)	258
ScaI	AGTACT	1 cut(s)	340
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	4 cut(s)	47, 52, 394, 395
SduI	GDGCHC	3 cut(s)	80, 199, 212
SetI	ASST	8 cut(s)	17, 80, 99, 199, 228, 234, 249, 349
SfaNI	GCATC	1 cut(s)	407
SfcI	CTRYAG	1 cut(s)	84
Sfr274I	CTCGAG	1 cut(s)	192
SlaI	CTCGAG	1 cut(s)	192
SmaI	CCCGGG	1 cut(s)	395
SmlI	CTYRAG	2 cut(s)	8, 192
SmoI	CTYRAG	2 cut(s)	8, 192
SphI	GCATGC	1 cut(s)	66
Sse9I	AATT	2 cut(s)	21, 352
SstI	GAGCTC	2 cut(s)	80, 199
StyD4I	CCNGG	4 cut(s)	45, 50, 392, 393
StyI	CCWWGG	2 cut(s)	15, 247
TaqI	TCGA	3 cut(s)	193, 199, 237
TasI	AATT	2 cut(s)	21, 352
TatI	WGTACW	2 cut(s)	117, 338
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	6 cut(s)	9, 72, 105, 243, 285, 377
Tru9I	TTAA	6 cut(s)	9, 72, 105, 243, 285, 377
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	393
TspRI	CASTG	1 cut(s)	175
Vha464I	CTTAAG	1 cut(s)	8
VspI	ATTAAT	1 cut(s)	105
XceI	RCATGY	2 cut(s)	66, 118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XhoI	CTCGAG	1 cut(s)	192
XmaI	CCCGGG	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	237
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.