Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004774

Physical Location & Seq

Genomic Coordinates Forward (+)

1967115 .. 1969971

Gene Structure 2857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0024900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGCTAGAACAAGAGGTAAATCTATGGAGGAGTTGATTCCACCTACACCTGTGAAACCGAGAAAGACAAAACGTGGGTCTACTTCTGGTCCATTCAAACGACCTCGGCCTAACATATCTACTCAAAATCAACTAGAAATGGCACCTGTGAGACATAGAGTTGTTCAATCAGAGACACAATCACATCAGCATCATGAGTCAGGATCTAGACATGAGGAGACTAGTCATGAGGAGACTCTGCCAACCCAATCAAATGAGCCAGACCAAACTGAAATCCAAGGAGTTAAGAAAGGTCGGGGTGCTGCTTGTGAAATGGAAGAGTGGGGGACTGGAAAAATAATACATATTGAATTTGGTGCTAATTGGATGCCTATTAATGAAGATGGAAAGAGGTTTAGTTCCCAACTTGGAGTCTTGGCTCGAGATGGGCAGAAGGTTCCTCTAACATATACTTCATGGAGTGGCATGCCTCCTGATGTATTAAATGGCATTTGGAAAGATGTCAAGGACAACACCGATGTCCCAGATGAATATAAACATAGTTGCTTGAAGGTGGTTGGTAACAGATGGAGGGATTGGAAGAGTCGAGTCAAGACACGATGGTATGATAAATATGAAACTGATGAGGAACGACTAGCAATCACGCCTAATCAGGTTGTTAGAGATCAATGGATACTATTAGTAAAGTATTGGGGTCTTCCGGATGTACAGGAGCTGTGTGAGACAAATAAACTTAGCCGTGCACAAGGAGGAGCCCCTCATAGAACTGGTCGAAAATCTTTTGCTAGAATACGGAAAGAGATGATGGATAGAGGAGAGAAAACTGATCGCTTGACCATGTTTATGAAAACACGAGCAAAAAAGACAAAGAATAATGAAGGCCAACAAGTTGAGAGTTTTGATGAGGAGGCTGCTGCTATTATAAGTCAATTCAATGATTATTTGGAGGAGAGGCCTGCAGATGAAGAAGATGATTCATTTCGAGAGGAGGTATTTACTAAAGTGATGGGAGAGGATACACATGGACGTGTCCGCATGTACGGGACAGGAGTAACTCCATCTCAAATATTTGGTCAAACTTCGACAACTTCTGGAATTAATGAAAAAAGAACATTGGAGGACATGGAAAGAAACTATGAGTCCAAGCTAAATGATCTTAAAAGTGGCTATGAATCTCAACTGGGAGAGATGAAATCAAAGTATGATGATATGAAATCAAAGTATGATGATGTATCGTCACGATTGGATCTTTTAATGGCTCATGTGGGCATCCAAGTGAACTCAAGTGGCACTAGAAGTGATCAGATTCCAGATGGCCAATTAGATAGAGAAGGGCAGCAACAAATGTCTTTGTCAACTTCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0006275 GO:0006996 GO:0007029 GO:0007030 GO:0007276 GO:0008150 GO:0008156 GO:0008361 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010256 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032504 GO:0032535 GO:0032875 GO:0032876 GO:0044703 GO:0045786 GO:0045934 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0080119 GO:0090066 GO:0090329 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

455

Amino Acids

52.1

Weight (kDa)

6.32

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	222 - 353	7.4e-26	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07100
fragaria_vesca	FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220
malus_domestica	MD04G1188900.v1.1 MD12G1201700.v1.1
prunus_persica	Prupe.6G306800_v2.0.a1 Prupe.6G306800_v2.0.a1 Prupe.6G306800_v2.0.a1
pyrus_communis	pycom04g16720 pycom04g16730 pycom12g18800 pycom12g18810
rosa_chinensis	RchiOBHm_Chr3g0458141
rosa_laevigata	RLG00000025175
rosa_multiflora	Rmu_sc0019452.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421270
rosa_rugosa	Rorug03G0024700 Rorug03G0024800 Rorug03G0024900 Rorug03G0024900 Rorug03G0025000
rosa_samantha	Rh3AG085700 Rh3BG088400 Rh3CG089000 Rh3DG089400
rosa_wichuraiana	Rw3G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	923
AccB1I	GGYRCC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	700
AciI	CCGC	1 cut(s)	1033
AclWI	GGATC	2 cut(s)	211, 1254
AcoI	YGGCCR	1 cut(s)	1315
AcsI	RAATTY	1 cut(s)	350
AfaI	GTAC	2 cut(s)	708, 1040
AflIII	ACRYGT	1 cut(s)	1027
AgsI	TTSAA	6 cut(s)	97, 167, 350, 550, 934, 1362
AhlI	ACTAGT	1 cut(s)	221
AjiI	CACGTC	1 cut(s)	1028
AluBI	AGCT	2 cut(s)	715, 1147
AluI	AGCT	2 cut(s)	715, 1147
Alw21I	GWGCWC	1 cut(s)	745
Alw26I	GTCTC	5 cut(s)	145, 167, 212, 227, 716
Alw44I	GTGCAC	1 cut(s)	741
AlwI	GGATC	2 cut(s)	211, 1254
AlwNI	CAGNNNCTG	1 cut(s)	715
Ama87I	CYCGRG	1 cut(s)	420
Aor13HI	TCCGGA	1 cut(s)	700
AoxI	GGCC	4 cut(s)	107, 880, 953, 1315
ApaLI	GTGCAC	1 cut(s)	741
ApeKI	GCWGC	4 cut(s)	302, 911, 914, 1336
ApoI	RAATTY	1 cut(s)	350
ArsI	GACNNNNNNTTYG	4 cut(s)	62, 94, 1057, 1089
AseI	ATTAAT	2 cut(s)	375, 1098
AspS9I	GGNCC	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	420
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	745
BalI	TGGCCA	1 cut(s)	1317
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	757
BauI	CACGAG	1 cut(s)	852
BbsI	GAAGAC	1 cut(s)	689
Bbv12I	GWGCWC	1 cut(s)	745
BbvI	GCAGC	4 cut(s)	289, 898, 901, 1348
BccI	CCATC	8 cut(s)	377, 419, 561, 594, 799, 1000, 1066, 1307
BceAI	ACGGC	1 cut(s)	723
BciVI	GTATCC	2 cut(s)	666, 1009
BclI	TGATCA	1 cut(s)	1300
BcoDI	GTCTC	5 cut(s)	145, 167, 212, 227, 716
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	7 cut(s)	6, 134, 207, 222, 635, 786, 1293
BfmI	CTRYAG	1 cut(s)	957
BfuI	GTATCC	2 cut(s)	666, 1009
BisI	GCNGC	4 cut(s)	303, 912, 915, 1337
BlsI	GCNGC	4 cut(s)	304, 913, 916, 1338
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	420
BmgBI	CACGTC	1 cut(s)	1028
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	3 cut(s)	144, 438, 754
BmrI	ACTGGG	1 cut(s)	1190
BmsI	GCATC	3 cut(s)	199, 357, 1278
BmuI	ACTGGG	1 cut(s)	1190
BpiI	GAAGAC	1 cut(s)	689
BpuEI	CTTGAG	1 cut(s)	1267
BsaJI	CCNNGG	2 cut(s)	104, 277
BsaWI	WCCGGW	1 cut(s)	700
Bse1I	ACTGG	3 cut(s)	334, 772, 1185
BseAI	TCCGGA	1 cut(s)	700
BseDI	CCNNGG	2 cut(s)	104, 277
BseGI	GGATG	3 cut(s)	372, 709, 1269
BseNI	ACTGG	3 cut(s)	334, 772, 1185
BseRI	GAGGAG	8 cut(s)	44, 230, 245, 765, 828, 920, 962, 1001
BseSI	GKGCMC	1 cut(s)	745
BseXI	GCAGC	4 cut(s)	289, 898, 901, 1348
BshFI	GGCC	4 cut(s)	109, 882, 955, 1317
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	745
BsiHKCI	CYCGRG	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	701
BslFI	GGGAC	3 cut(s)	340, 506, 1057
BsmAI	GTCTC	5 cut(s)	145, 167, 212, 227, 716
BsmFI	GGGAC	3 cut(s)	340, 506, 1057
BsnI	GGCC	4 cut(s)	109, 882, 955, 1317
BsoBI	CYCGRG	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	745, 757
Bsp13I	TCCGGA	1 cut(s)	700
Bsp1407I	TGTACA	1 cut(s)	706
Bsp143I	GATC	6 cut(s)	203, 664, 826, 1153, 1246, 1300
BspACI	CCGC	1 cut(s)	1033
BspANI	GGCC	4 cut(s)	109, 882, 955, 1317
BspEI	TCCGGA	1 cut(s)	700
BspHI	TCATGA	2 cut(s)	193, 226
BspLI	GGNNCC	3 cut(s)	144, 438, 754
BspMAI	CTGCAG	1 cut(s)	961
BspPI	GGATC	2 cut(s)	211, 1254
BspT107I	GGYRCC	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	706
BsrI	ACTGG	3 cut(s)	334, 772, 1185
BssECI	CCNNGG	2 cut(s)	104, 277
BssMI	GATC	6 cut(s)	203, 664, 826, 1153, 1246, 1300
BssSI	CACGAG	1 cut(s)	852
BssT1I	CCWWGG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	852
Bst6I	CTCTTC	2 cut(s)	312, 575
BstAUI	TGTACA	1 cut(s)	706
BstC8I	GCNNGC	2 cut(s)	467, 957
BstDEI	CTNAG	1 cut(s)	734
BstF5I	GGATG	3 cut(s)	372, 709, 1269
BstKTI	GATC	6 cut(s)	206, 667, 829, 1156, 1249, 1303
BstMAI	GTCTC	5 cut(s)	145, 167, 212, 227, 716
BstMBI	GATC	6 cut(s)	203, 664, 826, 1153, 1246, 1300
BstNSI	RCATGY	2 cut(s)	469, 1039
BstSFI	CTRYAG	1 cut(s)	957
BstSLI	GKGCMC	1 cut(s)	745
BstV1I	GCAGC	4 cut(s)	289, 898, 901, 1348
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	2 cut(s)	203, 1246
BstYI	RGATCY	2 cut(s)	203, 1246
BsuI	GTATCC	2 cut(s)	666, 1009
BsuRI	GGCC	4 cut(s)	109, 882, 955, 1317
BtrI	CACGTC	1 cut(s)	1028
BtsCI	GGATG	3 cut(s)	372, 709, 1269
Cac8I	GCNNGC	2 cut(s)	467, 957
CaiI	CAGNNNCTG	1 cut(s)	715
CciI	TCATGA	2 cut(s)	193, 226
Cfr13I	GGNCC	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	707, 1039
CviQI	GTAC	2 cut(s)	707, 1039
DdeI	CTNAG	1 cut(s)	734
DpnI	GATC	6 cut(s)	205, 666, 828, 1155, 1248, 1302
DpnII	GATC	6 cut(s)	203, 664, 826, 1153, 1246, 1300
EaeI	YGGCCR	1 cut(s)	1315
Eam1104I	CTCTTC	2 cut(s)	312, 575
EarI	CTCTTC	2 cut(s)	312, 575
Eco130I	CCWWGG	1 cut(s)	277
Eco147I	AGGCCT	1 cut(s)	955
Eco24I	GRGCYC	1 cut(s)	757
Eco47I	GGWCC	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	757
ErhI	CCWWGG	1 cut(s)	277
FaqI	GGGAC	3 cut(s)	340, 506, 1057
FbaI	TGATCA	1 cut(s)	1300
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	4 cut(s)	303, 912, 915, 1337
FokI	GGATG	3 cut(s)	379, 716, 1256
FriOI	GRGCYC	1 cut(s)	757
Fsp4HI	GCNGC	4 cut(s)	303, 912, 915, 1337
FspBI	CTAG	7 cut(s)	6, 134, 207, 222, 635, 786, 1293
GluI	GCNGC	4 cut(s)	303, 912, 915, 1337
HaeIII	GGCC	4 cut(s)	109, 882, 955, 1317
HapII	CCGG	1 cut(s)	701
HincII	GTYRAC	1 cut(s)	1356
HindII	GTYRAC	1 cut(s)	1356
HpaII	CCGG	1 cut(s)	701
Hpy166II	GTNNAC	4 cut(s)	81, 743, 1279, 1356
Hpy188I	TCNGA	2 cut(s)	172, 1305
Hpy8I	GTNNAC	4 cut(s)	81, 743, 1279, 1356
HpyAV	CCTTC	4 cut(s)	427, 544, 872, 1325
HpyCH4IV	ACGT	2 cut(s)	73, 1027
HpyCH4V	TGCA	2 cut(s)	743, 959
HpyF3I	CTNAG	1 cut(s)	734
HpySE526I	ACGT	2 cut(s)	73, 1027
Kpn2I	TCCGGA	1 cut(s)	700
Ksp22I	TGATCA	1 cut(s)	1300
Kzo9I	GATC	6 cut(s)	203, 664, 826, 1153, 1246, 1300
LmnI	GCTCC	2 cut(s)	712, 752
Lsp1109I	GCAGC	4 cut(s)	289, 898, 901, 1348
LweI	GCATC	3 cut(s)	199, 357, 1278
MaeI	CTAG	7 cut(s)	6, 134, 207, 222, 635, 786, 1293
MaeII	ACGT	2 cut(s)	73, 1027
MaeIII	GTNAC	3 cut(s)	560, 1051, 1236
MalI	GATC	6 cut(s)	205, 666, 828, 1155, 1248, 1302
MboI	GATC	6 cut(s)	203, 664, 826, 1153, 1246, 1300
MboII	GAAGA	6 cut(s)	329, 392, 592, 689, 977, 980
MflI	RGATCY	2 cut(s)	203, 1246
MhlI	GDGCHC	2 cut(s)	745, 757
MlsI	TGGCCA	1 cut(s)	1317
MluCI	AATT	5 cut(s)	350, 361, 929, 1095, 1319
MluNI	TGGCCA	1 cut(s)	1317
MlyI	GAGTC	6 cut(s)	206, 229, 420, 592, 597, 1148
Mox20I	TGGCCA	1 cut(s)	1317
MroI	TCCGGA	1 cut(s)	700
MscI	TGGCCA	1 cut(s)	1317
MseI	TTAA	6 cut(s)	285, 375, 482, 1098, 1158, 1253
MslI	CAYNNNNRTG	3 cut(s)	842, 1026, 1274
Msp20I	TGGCCA	1 cut(s)	1317
MspI	CCGG	1 cut(s)	701
NdeII	GATC	6 cut(s)	203, 664, 826, 1153, 1246, 1300
NlaIV	GGNNCC	3 cut(s)	144, 438, 754
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	1236
NspI	RCATGY	2 cut(s)	469, 1039
PaeI	GCATGC	1 cut(s)	469
PaeR7I	CTCGAG	1 cut(s)	420
PagI	TCATGA	2 cut(s)	193, 226
PceI	AGGCCT	1 cut(s)	955
PfeI	GAWTC	4 cut(s)	37, 974, 1172, 1306
PkrI	GCNGC	4 cut(s)	304, 913, 916, 1338
PleI	GAGTC	6 cut(s)	205, 229, 419, 591, 596, 1147
PpsI	GAGTC	6 cut(s)	205, 229, 419, 591, 596, 1147
PshBI	ATTAAT	2 cut(s)	375, 1098
PsiI	TTATAA	1 cut(s)	923
PspN4I	GGNNCC	3 cut(s)	144, 438, 754
PspPI	GGNCC	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	961
PstNI	CAGNNNCTG	1 cut(s)	715
PsuI	RGATCY	2 cut(s)	203, 1246
RsaI	GTAC	2 cut(s)	708, 1040
RsaNI	GTAC	2 cut(s)	707, 1039
RseI	CAYNNNNRTG	3 cut(s)	842, 1026, 1274
SaqAI	TTAA	6 cut(s)	285, 375, 482, 1098, 1158, 1253
SatI	GCNGC	4 cut(s)	303, 912, 915, 1337
Sau3AI	GATC	6 cut(s)	203, 664, 826, 1153, 1246, 1300
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	6 cut(s)	206, 229, 420, 592, 597, 1148
SduI	GDGCHC	2 cut(s)	745, 757
SfaNI	GCATC	3 cut(s)	199, 357, 1278
SfcI	CTRYAG	1 cut(s)	957
Sfr274I	CTCGAG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	420
SmiMI	CAYNNNNRTG	3 cut(s)	842, 1026, 1274
SmlI	CTYRAG	2 cut(s)	420, 1282
SmoI	CTYRAG	2 cut(s)	420, 1282
SpeI	ACTAGT	1 cut(s)	221
SphI	GCATGC	1 cut(s)	469
Sse9I	AATT	5 cut(s)	350, 361, 929, 1095, 1319
SseBI	AGGCCT	1 cut(s)	955
SsiI	CCGC	1 cut(s)	1033
SspI	AATATT	1 cut(s)	1068
SspMI	CTAG	7 cut(s)	6, 134, 207, 222, 635, 786, 1293
StuI	AGGCCT	1 cut(s)	955
StyI	CCWWGG	1 cut(s)	277
TaiI	ACGT	2 cut(s)	76, 1030
TaqI	TCGA	5 cut(s)	421, 586, 772, 982, 1082
TasI	AATT	5 cut(s)	350, 361, 929, 1095, 1319
TatI	WGTACW	1 cut(s)	706
TfiI	GAWTC	4 cut(s)	37, 974, 1172, 1306
Tru1I	TTAA	6 cut(s)	285, 375, 482, 1098, 1158, 1253
Tru9I	TTAA	6 cut(s)	285, 375, 482, 1098, 1158, 1253
TseFI	GTSAC	1 cut(s)	1236
TseI	GCWGC	4 cut(s)	302, 911, 914, 1336
Tsp45I	GTSAC	1 cut(s)	1236
TspGWI	ACGGA	1 cut(s)	808
VneI	GTGCAC	1 cut(s)	741
VpaK11BI	GGWCC	1 cut(s)	89
VspI	ATTAAT	2 cut(s)	375, 1098
XapI	RAATTY	1 cut(s)	350
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	2 cut(s)	469, 1039
XhoI	CTCGAG	1 cut(s)	420
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	7 cut(s)	6, 134, 207, 222, 635, 786, 1293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.