pycom12g18810

Protein transport protein Sec24-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
20889671 .. 20893075
3405 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g18810.9

Sequence Viewer

Length: 1488 bp
ATGTTTCAAGACAACGTGAATGTGGAGTCTGCTTTTGGTCCAGCTCTTAAGGCCTCGCTTATGCTTATGAGCAACCTTGGGGGAAAATTGTTAATTTTTCAAAATACACTGCCATCTCTTGGTGTTGGTCGCTTGAAGTTGCGTGGAGATGATCTTCGTGTCTATGGCTCTGATAAAGAGCATCCACTAAGACTGCCAGAGGATCCTTTCTACAAGCAGATGGCTGCAGAATTTACCAAGTTCCAGATAGGGGTGGATGTATATGCCTTCAGTGACAAGTACACGGATATAGCTTCATTAGGTACTCTGGCAAAATATACTGGGGGTCAGGTGTATTATTACCCAAATTTTCAATCTACCATTCACGGATATAAGTTGAAACATGAATTAGCAAGAGATCTTACTAGGGAAACTGCCTGGGAAGCAGTGATGCGCATAAGATGTGGAAAAGTGCGCTTTACGTCTTATCATGGGAACTTTATGCTAAGGTCCACAGACTTATTAGCACTTCCTGCTGTAGATTGTGATAAAGCATTTGCGATGCAGTTATCTCTTGAAGAGACGCTACTGACTATTCAGACAGTATATTTCCAAGTTGCCTTGCTATACACTGCATCCTGCGGAGAGAGGCGTATTAGAGTACATACAGCAGCAGTACCGGTGGTTACAGATCTGTCTGAGATGTATCGGCAGGCTGATACTGGTGCCATTGTCACCTTGCTTTCCAGGCTAGCAATTGAGAAAACTTTGTCCCATAAGTTGGAAGATGCTCGGAACTCTTTGCAGCTAAGAATTGTCAAAGCCCTCAAAGAATTTCGAAATCTCTATGCTGTACAACACCGCTTAGGAGGGAAGATGATATACTCAGAGTCTTTGAAGTTCTTGCCTTTGTATGGATTGGCACTTTGTAAATCAGCACCTCTTCGTGGGGGGTATGCAGACGTGTCACTTGATGAACGTTGTGCGGCAGGGCACACAATGATGACCTTACCAGTTAAAAAATTGTTGAAGCTCCTATATCCTAGTTTAATACGGCTCGATGAGTATCTTTTGAAGGCATCTTCTGAAGCTGATGACGTCAAAATCATAGAGAATAGGTTACCATTACTTGCTGAGAGCTTAGATTTCAGAGGCCTTTATATATTCGATGATGGGTTTCGCTATGTTCTATGGTTTGGTAGAGTTCTTCCACCTGATATAGCTAAGAATCTACTTGGGCCTGACTTTGCAGCAGAGTTATCAAAGGTTACCCTTCGTGAGCACGATAATGAAATGTCAAAGAAGCTAATGAGGATACTAAAGAAACTTAGAGAAAGTGATCCGTCATATTACCAGTTGTGTCATCTTGTAAGACAAGGTGAGCAGCCCCGAGAAGGCCATCTTATACTCGCCAATCTTGTTGAGGAGCAGATGGGTGGAAGCAATGGTTATGTTGATTGGATAATACAAGTACACCGGCAAGTCCAGCAAAATCCGGATGTTTACTAA

Protein Analysis

496

Amino Acids

56.21

Weight (kDa)

8.63

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1080
Acc16I TGCGCA 1 cut(s) 434
AccB1I GGYRCC 1 cut(s) 704
AccB7I CCANNNNNTGG 2 cut(s) 119, 760
AccIII TCCGGA 1 cut(s) 1474
AciI CCGC 3 cut(s) 621, 841, 965
AclI AACGTT 1 cut(s) 958
AclWI GGATC 3 cut(s) 197, 210, 1313
AcsI RAATTY 3 cut(s) 230, 346, 812
AcuI CTGAAG 2 cut(s) 253, 1086
AcyI GRCGYC 1 cut(s) 1077
AfaI GTAC 6 cut(s) 281, 304, 642, 657, 834, 1452
AfiI CCNNNNNNNGG 6 cut(s) 119, 250, 760, 893, 926, 1373
AflII CTTAAG 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 942
AgeI ACCGGT 1 cut(s) 658
AgsI TTSAA 9 cut(s) 8, 101, 136, 353, 379, 557, 877, 1009, 1054
AjiI CACGTC 1 cut(s) 943
AjnI CCWGG 2 cut(s) 416, 725
AluBI AGCT 8 cut(s) 44, 293, 787, 1012, 1070, 1119, 1202, 1285
AluI AGCT 8 cut(s) 44, 293, 787, 1012, 1070, 1119, 1202, 1285
Alw21I GWGCWC 1 cut(s) 1263
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 3 cut(s) 197, 210, 1313
Ama87I CYCGRG 1 cut(s) 1368
Aor13HI TCCGGA 1 cut(s) 1474
AoxI GGCC 4 cut(s) 51, 1132, 1217, 1375
ApeKI GCWGC 5 cut(s) 224, 650, 784, 1229, 1363
ApoI RAATTY 3 cut(s) 230, 346, 812
AsiGI ACCGGT 1 cut(s) 658
AspLEI GCGC 2 cut(s) 435, 456
AspS9I GGNCC 3 cut(s) 38, 489, 1217
AsuHPI GGTGA 2 cut(s) 706, 1370
AsuII TTCGAA 1 cut(s) 817
AsuNHI GCTAGC 1 cut(s) 730
AvaI CYCGRG 1 cut(s) 1368
AvaII GGWCC 2 cut(s) 38, 489
BaeGI GKGCMC 1 cut(s) 975
BamHI GGATCC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 704
BarI GAAGNNNNNNTAC 4 cut(s) 549, 581, 845, 877
Bbv12I GWGCWC 1 cut(s) 1263
BbvI GCAGC 5 cut(s) 211, 662, 796, 1241, 1375
BccI CCATC 5 cut(s) 121, 214, 1145, 1386, 1405
BceAI ACGGC 1 cut(s) 1049
BciT130I CCWGG 2 cut(s) 418, 727
BciVI GTATCC 1 cut(s) 1287
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 3 cut(s) 405, 731, 1023
BfmI CTRYAG 2 cut(s) 225, 516
BfrI CTTAAG 1 cut(s) 47
BfuI GTATCC 1 cut(s) 1287
BglII AGATCT 2 cut(s) 397, 670
BisI GCNGC 6 cut(s) 225, 651, 785, 966, 1230, 1364
BlsI GCNGC 6 cut(s) 226, 652, 786, 967, 1231, 1365
Bme1390I CCNGG 2 cut(s) 418, 727
Bme18I GGWCC 2 cut(s) 38, 489
BmeT110I CYCGRG 1 cut(s) 1368
BmgBI CACGTC 1 cut(s) 943
BmgT120I GGNCC 3 cut(s) 38, 489, 1217
BmiI GGNNCC 2 cut(s) 204, 706
BmrFI CCNGG 2 cut(s) 418, 727
BmrI ACTGGG 1 cut(s) 330
BmsI GCATC 6 cut(s) 190, 420, 531, 623, 757, 1067
BmtI GCTAGC 1 cut(s) 734
BmuI ACTGGG 1 cut(s) 330
Bpu10I CCTNAGC 2 cut(s) 485, 844
Bpu14I TTCGAA 1 cut(s) 817
BsaBI GATNNNNATC 1 cut(s) 1044
BsaHI GRCGYC 1 cut(s) 1077
BsaJI CCNNGG 2 cut(s) 76, 417
BsaWI WCCGGW 2 cut(s) 658, 1474
Bsc4I CCNNNNNNNGG 6 cut(s) 119, 250, 760, 893, 926, 1373
Bse118I RCCGGY 2 cut(s) 658, 1455
Bse1I ACTGG 4 cut(s) 325, 706, 992, 1333
Bse3DI GCAATG 1 cut(s) 1429
Bse8I GATNNNNATC 1 cut(s) 1044
BseAI TCCGGA 1 cut(s) 1474
BseBI CCWGG 2 cut(s) 418, 727
BseDI CCNNGG 2 cut(s) 76, 417
BseGI GGATG 4 cut(s) 181, 262, 614, 1483
BseJI GATNNNNATC 1 cut(s) 1044
BseLI CCNNNNNNNGG 6 cut(s) 119, 250, 760, 893, 926, 1373
BseMI GCAATG 1 cut(s) 1429
BseMII CTCAG 3 cut(s) 669, 879, 1104
BseNI ACTGG 4 cut(s) 325, 706, 992, 1333
BseRI GAGGAG 1 cut(s) 1418
BseSI GKGCMC 1 cut(s) 975
BseXI GCAGC 5 cut(s) 211, 662, 796, 1241, 1375
BshFI GGCC 4 cut(s) 53, 1134, 1219, 1377
BshNI GGYRCC 1 cut(s) 704
BshTI ACCGGT 1 cut(s) 658
BsiHKAI GWGCWC 1 cut(s) 1263
BsiHKCI CYCGRG 1 cut(s) 1368
BsiSI CCGG 3 cut(s) 659, 1456, 1475
BslFI GGGAC 1 cut(s) 736
BslI CCNNNNNNNGG 6 cut(s) 119, 250, 760, 893, 926, 1373
BsmAI GTCTC 1 cut(s) 554
BsmBI CGTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 736
BsnI GGCC 4 cut(s) 53, 1134, 1219, 1377
BsoBI CYCGRG 1 cut(s) 1368
Bsp119I TTCGAA 1 cut(s) 817
Bsp1286I GDGCHC 2 cut(s) 975, 1263
Bsp13I TCCGGA 1 cut(s) 1474
Bsp1407I TGTACA 1 cut(s) 832
Bsp143I GATC 5 cut(s) 151, 202, 397, 670, 1318
BspACI CCGC 3 cut(s) 621, 841, 965
BspANI GGCC 4 cut(s) 53, 1134, 1219, 1377
BspCNI CTCAG 3 cut(s) 670, 878, 1105
BspEI TCCGGA 1 cut(s) 1474
BspLI GGNNCC 2 cut(s) 204, 706
BspMAI CTGCAG 1 cut(s) 229
BspOI GCTAGC 1 cut(s) 734
BspPI GGATC 3 cut(s) 197, 210, 1313
BspT104I TTCGAA 1 cut(s) 817
BspT107I GGYRCC 1 cut(s) 704
BspTI CTTAAG 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 1429
BsrFI RCCGGY 2 cut(s) 658, 1455
BsrGI TGTACA 1 cut(s) 832
BsrI ACTGG 4 cut(s) 325, 706, 992, 1333
BssAI RCCGGY 2 cut(s) 658, 1455
BssECI CCNNGG 2 cut(s) 76, 417
BssMI GATC 5 cut(s) 151, 202, 397, 670, 1318
BssNI GRCGYC 1 cut(s) 1077
BssT1I CCWWGG 1 cut(s) 76
Bst2UI CCWGG 2 cut(s) 418, 727
Bst4CI ACNGT 1 cut(s) 583
Bst6I CTCTTC 2 cut(s) 552, 927
BstACI GRCGYC 1 cut(s) 1077
BstAFI CTTAAG 1 cut(s) 47
BstAPI GCANNNNNTGC 1 cut(s) 512
BstAUI TGTACA 1 cut(s) 832
BstBI TTCGAA 1 cut(s) 817
BstC8I GCNNGC 2 cut(s) 693, 732
BstEII GGTNACC 2 cut(s) 1098, 1246
BstF5I GGATG 4 cut(s) 181, 262, 614, 1483
BstHHI GCGC 2 cut(s) 435, 456
BstKTI GATC 5 cut(s) 154, 205, 400, 673, 1321
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 5 cut(s) 151, 202, 397, 670, 1318
BstMWI GCNNNNNNNGC 5 cut(s) 50, 422, 512, 727, 1465
BstNI CCWGG 2 cut(s) 418, 727
BstPI GGTNACC 2 cut(s) 1098, 1246
BstSCI CCNGG 2 cut(s) 416, 725
BstSFI CTRYAG 2 cut(s) 225, 516
BstSLI GKGCMC 1 cut(s) 975
BstV1I GCAGC 5 cut(s) 211, 662, 796, 1241, 1375
BstX2I RGATCY 3 cut(s) 202, 397, 670
BstYI RGATCY 3 cut(s) 202, 397, 670
BsuI GTATCC 1 cut(s) 1287
BsuRI GGCC 4 cut(s) 53, 1134, 1219, 1377
BtgZI GCGATG 1 cut(s) 554
BtrI CACGTC 1 cut(s) 943
BtsCI GGATG 4 cut(s) 181, 262, 614, 1483
BtsI GCAGTG 3 cut(s) 107, 432, 609
BtsIMutI CAGTG 4 cut(s) 107, 277, 432, 609
Cac8I GCNNGC 2 cut(s) 693, 732
CfoI GCGC 2 cut(s) 435, 456
Cfr10I RCCGGY 2 cut(s) 658, 1455
Cfr13I GGNCC 3 cut(s) 38, 489, 1217
CseI GACGC 1 cut(s) 571
Csp6I GTAC 6 cut(s) 280, 303, 641, 656, 833, 1451
CspAI ACCGGT 1 cut(s) 658
CviAII CATG 2 cut(s) 383, 470
CviQI GTAC 6 cut(s) 280, 303, 641, 656, 833, 1451
DpnI GATC 5 cut(s) 153, 204, 399, 672, 1320
DpnII GATC 5 cut(s) 151, 202, 397, 670, 1318
Eam1104I CTCTTC 2 cut(s) 552, 927
EarI CTCTTC 2 cut(s) 552, 927
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 2 cut(s) 53, 1134
Eco47I GGWCC 2 cut(s) 38, 489
Eco57I CTGAAG 2 cut(s) 253, 1086
Eco88I CYCGRG 1 cut(s) 1368
Eco91I GGTNACC 2 cut(s) 1098, 1246
EcoO65I GGTNACC 2 cut(s) 1098, 1246
EcoRII CCWGG 2 cut(s) 416, 725
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 554
FaeI CATG 2 cut(s) 386, 473
FalI AAGNNNNNCTT 2 cut(s) 1365, 1397
FaqI GGGAC 1 cut(s) 736
FatI CATG 2 cut(s) 382, 469
Fnu4HI GCNGC 6 cut(s) 225, 651, 785, 966, 1230, 1364
FokI GGATG 3 cut(s) 168, 269, 601
Fsp4HI GCNGC 6 cut(s) 225, 651, 785, 966, 1230, 1364
FspAI RTGCGCAY 1 cut(s) 434
FspBI CTAG 3 cut(s) 405, 731, 1023
FspI TGCGCA 1 cut(s) 434
GlaI GCGC 2 cut(s) 434, 455
GluI GCNGC 6 cut(s) 225, 651, 785, 966, 1230, 1364
HaeIII GGCC 4 cut(s) 53, 1134, 1219, 1377
HapII CCGG 3 cut(s) 659, 1456, 1475
HgaI GACGC 1 cut(s) 571
HhaI GCGC 2 cut(s) 435, 456
Hin1I GRCGYC 1 cut(s) 1077
Hin1II CATG 2 cut(s) 386, 473
Hin6I GCGC 2 cut(s) 433, 454
HinP1I GCGC 2 cut(s) 433, 454
HinfI GANTC 3 cut(s) 26, 869, 1207
HpaII CCGG 3 cut(s) 659, 1456, 1475
HphI GGTGA 2 cut(s) 706, 1370
Hpy166II GTNNAC 4 cut(s) 282, 492, 1453, 1483
Hpy188I TCNGA 7 cut(s) 172, 579, 679, 774, 868, 1066, 1130
Hpy188III TCNNGA 5 cut(s) 8, 244, 554, 1256, 1475
Hpy8I GTNNAC 4 cut(s) 282, 492, 1453, 1483
HpyAV CCTTC 4 cut(s) 277, 1048, 1262, 1367
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4IV ACGT 5 cut(s) 15, 461, 942, 958, 1077
HpyCH4V TGCA 6 cut(s) 227, 544, 614, 784, 938, 1229
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 422, 512, 727, 1465
HpySE526I ACGT 5 cut(s) 15, 461, 942, 958, 1077
Hsp92I GRCGYC 1 cut(s) 1077
Hsp92II CATG 2 cut(s) 386, 473
HspAI GCGC 2 cut(s) 433, 454
Kpn2I TCCGGA 1 cut(s) 1474
Kzo9I GATC 5 cut(s) 151, 202, 397, 670, 1318
LmnI GCTCC 2 cut(s) 1017, 1405
Lsp1109I GCAGC 5 cut(s) 211, 662, 796, 1241, 1375
LweI GCATC 6 cut(s) 190, 420, 531, 623, 757, 1067
MaeI CTAG 3 cut(s) 405, 731, 1023
MaeII ACGT 5 cut(s) 15, 461, 942, 958, 1077
MaeIII GTNAC 6 cut(s) 272, 664, 712, 945, 1098, 1246
MalI GATC 5 cut(s) 153, 204, 399, 672, 1320
MboI GATC 5 cut(s) 151, 202, 397, 670, 1318
MboII GAAGA 7 cut(s) 146, 569, 776, 865, 914, 1053, 1178
MfeI CAATTG 1 cut(s) 735
MflI RGATCY 3 cut(s) 202, 397, 670
MhlI GDGCHC 2 cut(s) 975, 1263
MluCI AATT 9 cut(s) 86, 93, 230, 346, 386, 735, 792, 812, 1001
MlyI GAGTC 2 cut(s) 35, 878
MmeI TCCRAC 1 cut(s) 741
MnlI CCTC 9 cut(s) 64, 193, 621, 815, 842, 930, 1124, 1284, 1396
MroI TCCGGA 1 cut(s) 1474
MseI TTAA 4 cut(s) 48, 92, 996, 1028
MslI CAYNNNNRTG 2 cut(s) 980, 1266
MspCI CTTAAG 1 cut(s) 47
MspI CCGG 3 cut(s) 659, 1456, 1475
MspR9I CCNGG 2 cut(s) 418, 727
MunI CAATTG 1 cut(s) 735
MvaI CCWGG 2 cut(s) 418, 727
MwoI GCNNNNNNNGC 5 cut(s) 50, 422, 512, 727, 1465
NdeII GATC 5 cut(s) 151, 202, 397, 670, 1318
NheI GCTAGC 1 cut(s) 730
NlaIII CATG 2 cut(s) 386, 473
NlaIV GGNNCC 2 cut(s) 204, 706
NmuCI GTSAC 3 cut(s) 272, 712, 945
NsbI TGCGCA 1 cut(s) 434
NspV TTCGAA 1 cut(s) 817
PceI AGGCCT 2 cut(s) 53, 1134
PfeI GAWTC 1 cut(s) 1207
PflMI CCANNNNNTGG 2 cut(s) 119, 760
PinAI ACCGGT 1 cut(s) 658
PkrI GCNGC 6 cut(s) 226, 652, 786, 967, 1231, 1365
PleI GAGTC 2 cut(s) 34, 877
PpsI GAGTC 2 cut(s) 34, 877
Psp1406I AACGTT 1 cut(s) 958
Psp6I CCWGG 2 cut(s) 416, 725
PspEI GGTNACC 2 cut(s) 1098, 1246
PspGI CCWGG 2 cut(s) 416, 725
PspN4I GGNNCC 2 cut(s) 204, 706
PspPI GGNCC 3 cut(s) 38, 489, 1217
PstI CTGCAG 1 cut(s) 229
PsuI RGATCY 3 cut(s) 202, 397, 670
RsaI GTAC 6 cut(s) 281, 304, 642, 657, 834, 1452
RsaNI GTAC 6 cut(s) 280, 303, 641, 656, 833, 1451
RseI CAYNNNNRTG 2 cut(s) 980, 1266
SaqAI TTAA 4 cut(s) 48, 92, 996, 1028
SatI GCNGC 6 cut(s) 225, 651, 785, 966, 1230, 1364
Sau3AI GATC 5 cut(s) 151, 202, 397, 670, 1318
Sau96I GGNCC 3 cut(s) 38, 489, 1217
SchI GAGTC 2 cut(s) 35, 878
ScrFI CCNGG 2 cut(s) 418, 727
SduI GDGCHC 2 cut(s) 975, 1263
SfaNI GCATC 6 cut(s) 190, 420, 531, 623, 757, 1067
SfcI CTRYAG 2 cut(s) 225, 516
SfuI TTCGAA 1 cut(s) 817
SinI GGWCC 2 cut(s) 38, 489
SmiMI CAYNNNNRTG 2 cut(s) 980, 1266
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 9 cut(s) 86, 93, 230, 346, 386, 735, 792, 812, 1001
SseBI AGGCCT 2 cut(s) 53, 1134
SsiI CCGC 3 cut(s) 621, 841, 965
SspMI CTAG 3 cut(s) 405, 731, 1023
StuI AGGCCT 2 cut(s) 53, 1134
StyD4I CCNGG 2 cut(s) 416, 725
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 583
TaiI ACGT 5 cut(s) 18, 464, 945, 961, 1080
TaqI TCGA 3 cut(s) 817, 1038, 1146
TasI AATT 9 cut(s) 86, 93, 230, 346, 386, 735, 792, 812, 1001
TatI WGTACW 4 cut(s) 279, 640, 832, 1450
TauI GCSGC 1 cut(s) 968
TfiI GAWTC 1 cut(s) 1207
Tru1I TTAA 4 cut(s) 48, 92, 996, 1028
Tru9I TTAA 4 cut(s) 48, 92, 996, 1028
TscAI CASTG 4 cut(s) 114, 277, 432, 616
TseFI GTSAC 3 cut(s) 272, 712, 945
TseI GCWGC 5 cut(s) 224, 650, 784, 1229, 1363
Tsp45I GTSAC 3 cut(s) 272, 712, 945
TspDTI ATGAA 4 cut(s) 285, 399, 969, 1284
TspGWI ACGGA 3 cut(s) 299, 381, 1311
TspRI CASTG 4 cut(s) 114, 277, 432, 616
Van91I CCANNNNNTGG 2 cut(s) 119, 760
Vha464I CTTAAG 1 cut(s) 47
VpaK11BI GGWCC 2 cut(s) 38, 489
XapI RAATTY 3 cut(s) 230, 346, 812
XspI CTAG 3 cut(s) 405, 731, 1023
ZraI GACGTC 1 cut(s) 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.