Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004774

Physical Location & Seq

Genomic Coordinates Reverse (-)

1958083 .. 1958373

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0024700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCACCCATTGCAGGTGACCCGAGTTTGGGATCTCAGCTGTGCTACGAGACTCAAATTAATCTCGAAGGGCCAATATTGACGGTGCATTTTAAGGGGGGTGCTAATGTGGTGTTAACACCAACACAGACCTTCATTCCACCAAAAGATGGGGTTTTCTGCTTCGCAATGCAAGGTGTTGCTAGTGATGGTGGTATTATCGGAAACTTTGCTCAGTCAAATTTCTTGATCGGTTATGACCTTGAAAAAATGACAGTCTCATTCAAGCCAGCAGATTGCACAAAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0006275 GO:0006996 GO:0007029 GO:0007030 GO:0007276 GO:0008150 GO:0008156 GO:0008361 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010256 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032504 GO:0032535 GO:0032875 GO:0032876 GO:0044703 GO:0045786 GO:0045934 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0080119 GO:0090066 GO:0090329 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

96

Amino Acids

10.1

Weight (kDa)

4.7

Isoelectric Point (pI)

22.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_C	PF14541	15 - 89	2.1e-12	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07100
fragaria_vesca	FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220 FvH4_6g08220
malus_domestica	MD04G1188900.v1.1 MD12G1201700.v1.1
prunus_persica	Prupe.6G306800_v2.0.a1 Prupe.6G306800_v2.0.a1 Prupe.6G306800_v2.0.a1
pyrus_communis	pycom04g16720 pycom04g16730 pycom12g18800 pycom12g18810
rosa_chinensis	RchiOBHm_Chr3g0458141
rosa_laevigata	RLG00000025175
rosa_multiflora	Rmu_sc0019452.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421270
rosa_rugosa	Rorug03G0024700 Rorug03G0024800 Rorug03G0024900 Rorug03G0024900 Rorug03G0025000
rosa_samantha	Rh3AG085700 Rh3BG088400 Rh3CG089000 Rh3DG089400
rosa_wichuraiana	Rw3G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	149
AclWI	GGATC	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	220
AfiI	CCNNNNNNNGG	4 cut(s)	14, 28, 29, 149
AgsI	TTSAA	2 cut(s)	245, 265
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw26I	GTCTC	2 cut(s)	44, 262
AlwI	GGATC	1 cut(s)	40
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	220
AseI	ATTAAT	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	29
AvaI	CYCGRG	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	4
BccI	CCATC	2 cut(s)	143, 182
BcoDI	GTCTC	2 cut(s)	44, 262
BfaI	CTAG	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	5
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 28, 29, 149
Bse3DI	GCAATG	2 cut(s)	9, 174
BseLI	CCNNNNNNNGG	4 cut(s)	14, 28, 29, 149
BseMI	GCAATG	2 cut(s)	9, 174
BseMII	CTCAG	2 cut(s)	50, 227
BshFI	GGCC	1 cut(s)	73
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	22
BslI	CCNNNNNNNGG	4 cut(s)	14, 28, 29, 149
BsmAI	GTCTC	2 cut(s)	44, 262
BsnI	GGCC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	32, 228
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	2 cut(s)	49, 226
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	9, 174
BssMI	GATC	2 cut(s)	32, 228
Bst4CI	ACNGT	2 cut(s)	85, 256
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	36, 213
BstEII	GGTNACC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	35, 231
BstMAI	GTCTC	2 cut(s)	44, 262
BstMBI	GATC	2 cut(s)	32, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstPI	GGTNACC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	71
CviJI	RGCY	3 cut(s)	40, 73, 268
CviKI_1	RGCY	3 cut(s)	40, 73, 268
DdeI	CTNAG	2 cut(s)	36, 213
DpnI	GATC	2 cut(s)	34, 230
DpnII	GATC	2 cut(s)	32, 228
Eco88I	CYCGRG	1 cut(s)	22
Eco91I	GGTNACC	1 cut(s)	17
EcoO65I	GGTNACC	1 cut(s)	17
FaiI	YATR	1 cut(s)	237
FspBI	CTAG	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	1 cut(s)	52
HpaI	GTTAAC	1 cut(s)	117
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	2 cut(s)	65, 226
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	2 cut(s)	62, 142
HpyCH4III	ACNGT	2 cut(s)	85, 256
HpyCH4V	TGCA	4 cut(s)	14, 88, 172, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	36, 213
KspAI	GTTAAC	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	32, 228
LpnPI	CCDG	1 cut(s)	282
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	2 cut(s)	34, 230
MboI	GATC	2 cut(s)	32, 228
MflI	RGATCY	1 cut(s)	32
MluCI	AATT	2 cut(s)	57, 220
MlyI	GAGTC	1 cut(s)	46
MseI	TTAA	3 cut(s)	60, 93, 116
MspA1I	CMGCKG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	32, 228
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	17
PaqCI	CACCTGC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	149
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	60
PspEI	GGTNACC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	40
SaqAI	TTAA	3 cut(s)	60, 93, 116
Sau3AI	GATC	2 cut(s)	32, 228
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	46
SetI	ASST	5 cut(s)	19, 42, 134, 178, 243
Sse9I	AATT	2 cut(s)	57, 220
SspI	AATATT	1 cut(s)	78
SspMI	CTAG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	85, 256
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	57, 220
Tru1I	TTAA	3 cut(s)	60, 93, 116
Tru9I	TTAA	3 cut(s)	60, 93, 116
TseFI	GTSAC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	149
VspI	ATTAAT	1 cut(s)	60
XapI	RAATTY	1 cut(s)	220
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.