pycom12g18800

Protein transport protein Sec24-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
20886611 .. 20889577
2967 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g18800.2

Sequence Viewer

Length: 1569 bp
ATGGGGACTGAAAACCCTGGTCGTCCGAATTTTACTGCAAGACCTGCCACTGCACCTTTTGCGGCTCCTCCTCAAAACATGATGCCTTTTTCATCTTCAGGTCCCATGGGTGGACAGGAGGCATATGGTTTTAGACCTCCTCCACCTGTCACGCAACAGACACCTTTTTCATCGTCTGGGCCTGTGGTTGGACCAGATGCCTCTAACTTCAGACCTACTCCATCAGTTCCTCCACAGACTAATGTGCCGTTCTCATCATCTGGATCTGCAGTTGGACCACAAGCCTCTCCTTTTAGGCCTACACTGCCAAGTAGGTTTCATGATCCATCTGTGCCTCCTCCACTAACTTCAAGTGTCCCGCCGAGTGTTGGACCTTACTCCCGTTTCCCAACACCACAATATCCACCAGCAGCGCAAGCACCAACTGCACGTGGTCCACCTGTAGGCCAAATGCCGTTTCAACTTCCTCCTGGTCAAGCACCATTTCAACGACCACAACAGCACATACCTTCTGTGCCAATGGGACCTCCACCTCAAAGCATTAATTCTGCACCACCAAGTGTGAATGCTTTTCAGTCTCCATCAGATTCATCATTCCCAGCTTCCCTACCAAATGCTCAGACATCTCTTCCTGGATTTCCCCGTAAGCAGTCTAGTGTAGATTCACTAGCCCCACCTGCTCAGTCTCCATTTCTTACTCATCAAGGAAGCTATGCAGCTGCTCCACCAGCAGTGTCCTCTCCTTTTGCAGCTCACCAAGGAGGTTATGCTCCACCTACGCAAGGTGCAGCTCCATTGGGTATGTCAAGGGACCACATGCAACATCATGGTTCTGGACCTCCCGTTGGTGCCGTCCAAGCCTTGACAGACGACTTCAGCGCACTATCTATTGGATCTGTTCCCGGATCAATTGAACCTGGACTCGACCCTAAAGCTTTGCCAAGGCCTTTGGCTGGTGACGTGGAGCCAACATCACTTGCTCAGATGTACCCCATGAATTGCAATCCTAGATTTCTACGGCTTACAACTGGTGCAATACCAAGTTCTCAGTCTTTGTCTTCAAGGTGGCATTTACCTTTGGGAGCAGTTGTTTGTCCACTTGCTGAACCACCTGATGGGGAGGAAGTTCCAATTGTTAATTTTGGTTCGTCCGGGATTATTCGCTGTAGAAGATGTCGGACGTATGTGAACCCCTATGTGACATTTACAGATGCTGGAAGAAAGTGGCGTTGCAACATTTGTGCTTTACTTAATGATGTCCCTGGGGATTACTTTGCTCATTTGGATGCGATTGGCAGAAGAATTGATTTGGATCAACGACCTGAGCTTACACAGGGTAGTGTGGAATTTGTTGCTCCAACTGAATATATGGTCCGGCCTCCTATGCCGCCACTGTATTTTTTCCTCATTGACGTTTCGATGTCTGCTGTCAGAAGTGGTATGATTGAGGTTGTGGCCCAAACTATCCAGTCATGCTTGGATGAGCTTCCTGGCTTCCCCAGAACACAAATTGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAAGTATCGATCTAG

Protein Analysis

523

Amino Acids

55.29

Weight (kDa)

7.14

Isoelectric Point (pI)

74.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1548
AarI CACCTGC 1 cut(s) 685
Acc36I ACCTGC 2 cut(s) 52, 685
AccB1I GGYRCC 1 cut(s) 848
AccB7I CCANNNNNTGG 1 cut(s) 1115
AciI CCGC 3 cut(s) 62, 359, 1388
AclWI GGATC 5 cut(s) 271, 317, 901, 913, 1320
AcsI RAATTY 2 cut(s) 28, 1346
AcuI CTGAAG 3 cut(s) 81, 193, 859
AcvI CACGTG 1 cut(s) 431
AdeI CACNNNGTG 1 cut(s) 560
AfaI GTAC 1 cut(s) 989
AfiI CCNNNNNNNGG 8 cut(s) 110, 188, 368, 443, 782, 845, 953, 1115
AgsI TTSAA 5 cut(s) 351, 461, 488, 914, 1062
AjiI CACGTC 1 cut(s) 961
AjnI CCWGG 6 cut(s) 16, 469, 631, 916, 1261, 1489
AjuI GAANNNNNNNTTGG 2 cut(s) 441, 473
AluBI AGCT 8 cut(s) 602, 711, 719, 752, 791, 935, 1327, 1486
AluI AGCT 8 cut(s) 602, 711, 719, 752, 791, 935, 1327, 1486
Alw26I GTCTC 2 cut(s) 582, 690
AlwI GGATC 5 cut(s) 271, 317, 901, 913, 1320
AlwNI CAGNNNCTG 1 cut(s) 1214
AoxI GGCC 6 cut(s) 179, 296, 445, 944, 1376, 1455
ApeKI GCWGC 5 cut(s) 410, 716, 719, 749, 788
ApoI RAATTY 2 cut(s) 28, 1346
AseI ATTAAT 1 cut(s) 543
AspLEI GCGC 2 cut(s) 415, 881
AsuC2I CCSGG 2 cut(s) 903, 1153
AsuHPI GGTGA 2 cut(s) 746, 968
AvaII GGWCC 9 cut(s) 101, 191, 275, 371, 434, 524, 811, 836, 1372
BanI GGYRCC 1 cut(s) 848
BbrPI CACGTG 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 1050
BbvI GCAGC 5 cut(s) 422, 706, 728, 761, 800
BccI CCATC 4 cut(s) 229, 334, 589, 1109
BceAI ACGGC 4 cut(s) 232, 439, 836, 1034
BciT130I CCWGG 6 cut(s) 18, 471, 633, 918, 1263, 1491
BcnI CCSGG 2 cut(s) 903, 1153
BcoDI GTCTC 2 cut(s) 582, 690
BfaI CTAG 4 cut(s) 654, 668, 1008, 1567
BfmI CTRYAG 3 cut(s) 267, 441, 1165
BfuAI ACCTGC 2 cut(s) 52, 685
BisI GCNGC 7 cut(s) 63, 411, 717, 720, 750, 789, 1388
BlsI GCNGC 7 cut(s) 64, 412, 718, 721, 751, 790, 1389
Bme1390I CCNGG 8 cut(s) 18, 471, 633, 903, 918, 1153, 1263, 1491
Bme18I GGWCC 9 cut(s) 101, 191, 275, 371, 434, 524, 811, 836, 1372
BmgBI CACGTC 1 cut(s) 961
BmiI GGNNCC 6 cut(s) 66, 103, 525, 812, 850, 966
BmrFI CCNGG 8 cut(s) 18, 471, 633, 903, 918, 1153, 1263, 1491
BmsI GCATC 4 cut(s) 72, 187, 1201, 1276
BpiI GAAGAC 1 cut(s) 1050
Bpu10I CCTNAGC 1 cut(s) 1323
BpuMI CCSGG 2 cut(s) 903, 1153
Bsa29I ATCGAT 1 cut(s) 1562
BsaAI YACGTR 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 1311
BsaJI CCNNGG 6 cut(s) 16, 105, 757, 941, 1261, 1262
BsaXI ACNNNNNCTCC 2 cut(s) 1074, 1104
Bsc4I CCNNNNNNNGG 8 cut(s) 110, 188, 368, 443, 782, 845, 953, 1115
Bse1I ACTGG 2 cut(s) 1033, 1468
Bse8I GATNNNNATC 1 cut(s) 1311
BseBI CCWGG 6 cut(s) 18, 471, 633, 918, 1263, 1491
BseCI ATCGAT 1 cut(s) 1562
BseDI CCNNGG 6 cut(s) 16, 105, 757, 941, 1261, 1262
BseGI GGATG 2 cut(s) 1291, 1486
BseJI GATNNNNATC 1 cut(s) 1311
BseLI CCNNNNNNNGG 8 cut(s) 110, 188, 368, 443, 782, 845, 953, 1115
BseMII CTCAG 5 cut(s) 632, 695, 995, 1061, 1314
BseNI ACTGG 2 cut(s) 1033, 1468
BseRI GAGGAG 4 cut(s) 57, 60, 129, 327
BseXI GCAGC 5 cut(s) 422, 706, 728, 761, 800
BseYI CCCAGC 1 cut(s) 598
BsgI GTGCAG 4 cut(s) 36, 411, 534, 807
BshFI GGCC 6 cut(s) 181, 298, 447, 946, 1378, 1457
BshNI GGYRCC 1 cut(s) 848
BshVI ATCGAT 1 cut(s) 1562
BsiSI CCGG 3 cut(s) 903, 1152, 1375
BslFI GGGAC 6 cut(s) 19, 87, 341, 537, 824, 1244
BslI CCNNNNNNNGG 8 cut(s) 110, 188, 368, 443, 782, 845, 953, 1115
BsmAI GTCTC 2 cut(s) 582, 690
BsmFI GGGAC 6 cut(s) 19, 87, 341, 537, 824, 1244
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 6 cut(s) 181, 298, 447, 946, 1378, 1457
Bsp143I GATC 6 cut(s) 263, 322, 893, 905, 1312, 1563
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 3 cut(s) 62, 359, 1388
BspANI GGCC 6 cut(s) 181, 298, 447, 946, 1378, 1457
BspCNI CTCAG 5 cut(s) 631, 694, 994, 1060, 1315
BspDI ATCGAT 1 cut(s) 1562
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 6 cut(s) 66, 103, 525, 812, 850, 966
BspMAI CTGCAG 1 cut(s) 271
BspMI ACCTGC 2 cut(s) 52, 685
BspPI GGATC 5 cut(s) 271, 317, 901, 913, 1320
BspT107I GGYRCC 1 cut(s) 848
BsrI ACTGG 2 cut(s) 1033, 1468
BssECI CCNNGG 6 cut(s) 16, 105, 757, 941, 1261, 1262
BssMI GATC 6 cut(s) 263, 322, 893, 905, 1312, 1563
BssT1I CCWWGG 3 cut(s) 105, 757, 941
Bst2UI CCWGG 6 cut(s) 18, 471, 633, 918, 1263, 1491
Bst4CI ACNGT 1 cut(s) 1395
Bst6I CTCTTC 1 cut(s) 633
BstAPI GCANNNNNTGC 3 cut(s) 44, 59, 425
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 5 cut(s) 618, 681, 981, 1047, 1323
BstDSI CCRYGG 1 cut(s) 105
BstENI CCTNNNNNAGG 1 cut(s) 780
BstF5I GGATG 2 cut(s) 1291, 1486
BstHHI GCGC 2 cut(s) 415, 881
BstKTI GATC 6 cut(s) 266, 325, 896, 908, 1315, 1566
BstMAI GTCTC 2 cut(s) 582, 690
BstMBI GATC 6 cut(s) 263, 322, 893, 905, 1312, 1563
BstMWI GCNNNNNNNGC 9 cut(s) 44, 59, 304, 416, 425, 677, 728, 857, 1384
BstNI CCWGG 6 cut(s) 18, 471, 633, 918, 1263, 1491
BstNSI RCATGY 1 cut(s) 820
BstSCI CCNGG 8 cut(s) 16, 469, 631, 901, 916, 1151, 1261, 1489
BstSFI CTRYAG 3 cut(s) 267, 441, 1165
BstV1I GCAGC 5 cut(s) 422, 706, 728, 761, 800
BstV2I GAAGAC 1 cut(s) 1050
BstX2I RGATCY 2 cut(s) 263, 893
BstYI RGATCY 2 cut(s) 263, 893
Bsu15I ATCGAT 1 cut(s) 1562
BsuRI GGCC 6 cut(s) 181, 298, 447, 946, 1378, 1457
BsuTUI ATCGAT 1 cut(s) 1562
BtgI CCRYGG 1 cut(s) 105
BtrI CACGTC 1 cut(s) 961
BtsCI GGATG 2 cut(s) 1291, 1486
BtsI GCAGTG 3 cut(s) 48, 302, 738
BtsIMutI CAGTG 4 cut(s) 48, 302, 738, 1391
BveI ACCTGC 2 cut(s) 52, 685
Cac8I GCNNGC 1 cut(s) 417
CaiI CAGNNNCTG 1 cut(s) 1214
CciI TCATGA 1 cut(s) 319
CfoI GCGC 2 cut(s) 415, 881
ClaI ATCGAT 1 cut(s) 1562
Csp6I GTAC 1 cut(s) 988
CviAII CATG 8 cut(s) 79, 106, 320, 817, 827, 994, 1473, 1552
CviQI GTAC 1 cut(s) 988
DdeI CTNAG 5 cut(s) 618, 681, 981, 1047, 1323
DpnI GATC 6 cut(s) 265, 324, 895, 907, 1314, 1565
DpnII GATC 6 cut(s) 263, 322, 893, 905, 1312, 1563
DraIII CACNNNGTG 1 cut(s) 560
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Eco130I CCWWGG 3 cut(s) 105, 757, 941
Eco147I AGGCCT 2 cut(s) 298, 946
Eco47I GGWCC 9 cut(s) 101, 191, 275, 371, 434, 524, 811, 836, 1372
Eco57I CTGAAG 3 cut(s) 81, 193, 859
Eco72I CACGTG 1 cut(s) 431
EcoNI CCTNNNNNAGG 1 cut(s) 780
EcoO109I RGGNCCY 2 cut(s) 101, 524
EcoRII CCWGG 6 cut(s) 16, 469, 631, 916, 1261, 1489
EcoT14I CCWWGG 3 cut(s) 105, 757, 941
ErhI CCWWGG 3 cut(s) 105, 757, 941
FaeI CATG 8 cut(s) 82, 109, 323, 820, 830, 997, 1476, 1555
FaqI GGGAC 6 cut(s) 19, 87, 341, 537, 824, 1244
FatI CATG 8 cut(s) 78, 105, 319, 816, 826, 993, 1472, 1551
FauI CCCGC 1 cut(s) 366
FauNDI CATATG 1 cut(s) 124
Fnu4HI GCNGC 7 cut(s) 63, 411, 717, 720, 750, 789, 1388
FokI GGATG 2 cut(s) 1298, 1493
Fsp4HI GCNGC 7 cut(s) 63, 411, 717, 720, 750, 789, 1388
FspBI CTAG 4 cut(s) 654, 668, 1008, 1567
GlaI GCGC 2 cut(s) 414, 880
GluI GCNGC 7 cut(s) 63, 411, 717, 720, 750, 789, 1388
GsaI CCCAGC 1 cut(s) 602
HaeIII GGCC 6 cut(s) 181, 298, 447, 946, 1378, 1457
HapII CCGG 3 cut(s) 903, 1152, 1375
HhaI GCGC 2 cut(s) 415, 881
Hin1II CATG 8 cut(s) 82, 109, 323, 820, 830, 997, 1476, 1555
Hin6I GCGC 2 cut(s) 413, 879
HinP1I GCGC 2 cut(s) 413, 879
HindIII AAGCTT 1 cut(s) 933
HinfI GANTC 3 cut(s) 587, 662, 921
HpaII CCGG 3 cut(s) 903, 1152, 1375
HphI GGTGA 2 cut(s) 746, 968
Hpy166II GTNNAC 4 cut(s) 113, 437, 1097, 1189
Hpy188I TCNGA 7 cut(s) 27, 212, 586, 621, 984, 1179, 1433
Hpy188III TCNNGA 3 cut(s) 261, 320, 834
Hpy8I GTNNAC 4 cut(s) 113, 437, 1097, 1189
HpyAV CCTTC 1 cut(s) 519
HpyCH4III ACNGT 1 cut(s) 1395
HpyCH4IV ACGT 4 cut(s) 430, 960, 1181, 1413
HpyF10VI GCNNNNNNNGC 9 cut(s) 44, 59, 304, 416, 425, 677, 728, 857, 1384
HpyF3I CTNAG 5 cut(s) 618, 681, 981, 1047, 1323
HpySE526I ACGT 4 cut(s) 430, 960, 1181, 1413
Hsp92II CATG 8 cut(s) 82, 109, 323, 820, 830, 997, 1476, 1555
HspAI GCGC 2 cut(s) 413, 879
Kzo9I GATC 6 cut(s) 263, 322, 893, 905, 1312, 1563
LmnI GCTCC 7 cut(s) 70, 727, 775, 796, 964, 1082, 1360
Lsp1109I GCAGC 5 cut(s) 422, 706, 728, 761, 800
LweI GCATC 4 cut(s) 72, 187, 1201, 1276
MaeI CTAG 4 cut(s) 654, 668, 1008, 1567
MaeII ACGT 4 cut(s) 430, 960, 1181, 1413
MaeIII GTNAC 3 cut(s) 148, 956, 1198
MalI GATC 6 cut(s) 265, 324, 895, 907, 1314, 1565
MboI GATC 6 cut(s) 263, 322, 893, 905, 1312, 1563
MboII GAAGA 6 cut(s) 87, 620, 1050, 1182, 1230, 1311
MfeI CAATTG 2 cut(s) 909, 1131
MflI RGATCY 2 cut(s) 263, 893
MluCI AATT 9 cut(s) 28, 544, 909, 997, 1131, 1138, 1302, 1346, 1509
MlyI GAGTC 1 cut(s) 915
MmeI TCCRAC 5 cut(s) 169, 253, 349, 1157, 1382
MseI TTAA 3 cut(s) 543, 1137, 1251
MslI CAYNNNNRTG 1 cut(s) 1284
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 3 cut(s) 903, 1152, 1375
MspR9I CCNGG 8 cut(s) 18, 471, 633, 903, 918, 1153, 1263, 1491
MunI CAATTG 2 cut(s) 909, 1131
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 6 cut(s) 18, 471, 633, 918, 1263, 1491
MwoI GCNNNNNNNGC 9 cut(s) 44, 59, 304, 416, 425, 677, 728, 857, 1384
NciI CCSGG 2 cut(s) 903, 1153
NcoI CCATGG 1 cut(s) 105
NdeI CATATG 1 cut(s) 124
NdeII GATC 6 cut(s) 263, 322, 893, 905, 1312, 1563
NlaIII CATG 8 cut(s) 82, 109, 323, 820, 830, 997, 1476, 1555
NlaIV GGNNCC 6 cut(s) 66, 103, 525, 812, 850, 966
NmeAIII GCCGAG 1 cut(s) 387
NmuCI GTSAC 3 cut(s) 148, 956, 1198
NspI RCATGY 1 cut(s) 820
PagI TCATGA 1 cut(s) 319
PaqCI CACCTGC 1 cut(s) 685
PasI CCCWGGG 1 cut(s) 1262
PceI AGGCCT 2 cut(s) 298, 946
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 2 cut(s) 587, 662
PflMI CCANNNNNTGG 1 cut(s) 1115
PfoI TCCNGGA 3 cut(s) 631, 901, 1151
PkrI GCNGC 7 cut(s) 64, 412, 718, 721, 751, 790, 1389
PleI GAGTC 1 cut(s) 915
PmaCI CACGTG 1 cut(s) 431
PmlI CACGTG 1 cut(s) 431
PpsI GAGTC 1 cut(s) 915
Ppu21I YACGTR 1 cut(s) 431
PpuMI RGGWCCY 2 cut(s) 101, 524
PshBI ATTAAT 1 cut(s) 543
PsiI TTATAA 1 cut(s) 1548
Psp5II RGGWCCY 2 cut(s) 101, 524
Psp6I CCWGG 6 cut(s) 16, 469, 631, 916, 1261, 1489
PspCI CACGTG 1 cut(s) 431
PspFI CCCAGC 1 cut(s) 598
PspGI CCWGG 6 cut(s) 16, 469, 631, 916, 1261, 1489
PspN4I GGNNCC 6 cut(s) 66, 103, 525, 812, 850, 966
PspPPI RGGWCCY 2 cut(s) 101, 524
PstI CTGCAG 1 cut(s) 271
PstNI CAGNNNCTG 1 cut(s) 1214
PsuI RGATCY 2 cut(s) 263, 893
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 1 cut(s) 989
RsaNI GTAC 1 cut(s) 988
RseI CAYNNNNRTG 1 cut(s) 1284
SaqAI TTAA 3 cut(s) 543, 1137, 1251
SatI GCNGC 7 cut(s) 63, 411, 717, 720, 750, 789, 1388
Sau3AI GATC 6 cut(s) 263, 322, 893, 905, 1312, 1563
SchI GAGTC 1 cut(s) 915
ScrFI CCNGG 8 cut(s) 18, 471, 633, 903, 918, 1153, 1263, 1491
SfaNI GCATC 4 cut(s) 72, 187, 1201, 1276
SfcI CTRYAG 3 cut(s) 267, 441, 1165
SinI GGWCC 9 cut(s) 101, 191, 275, 371, 434, 524, 811, 836, 1372
SmiMI CAYNNNNRTG 1 cut(s) 1284
Sse9I AATT 9 cut(s) 28, 544, 909, 997, 1131, 1138, 1302, 1346, 1509
SseBI AGGCCT 2 cut(s) 298, 946
SsiI CCGC 3 cut(s) 62, 359, 1388
SspMI CTAG 4 cut(s) 654, 668, 1008, 1567
StuI AGGCCT 2 cut(s) 298, 946
StyD4I CCNGG 8 cut(s) 16, 469, 631, 901, 916, 1151, 1261, 1489
StyI CCWWGG 3 cut(s) 105, 757, 941
TaaI ACNGT 1 cut(s) 1395
TaiI ACGT 4 cut(s) 433, 963, 1184, 1416
TaqI TCGA 3 cut(s) 924, 1418, 1562
TasI AATT 9 cut(s) 28, 544, 909, 997, 1131, 1138, 1302, 1346, 1509
TauI GCSGC 2 cut(s) 65, 1390
TfiI GAWTC 2 cut(s) 587, 662
Tru1I TTAA 3 cut(s) 543, 1137, 1251
Tru9I TTAA 3 cut(s) 543, 1137, 1251
TscAI CASTG 4 cut(s) 55, 309, 738, 1398
TseFI GTSAC 3 cut(s) 148, 956, 1198
TseI GCWGC 5 cut(s) 410, 716, 719, 749, 788
Tsp45I GTSAC 3 cut(s) 148, 956, 1198
TspDTI ATGAA 6 cut(s) 81, 159, 308, 579, 1010, 1568
TspRI CASTG 4 cut(s) 55, 309, 738, 1398
Van91I CCANNNNNTGG 1 cut(s) 1115
VpaK11BI GGWCC 9 cut(s) 101, 191, 275, 371, 434, 524, 811, 836, 1372
VspI ATTAAT 1 cut(s) 543
XagI CCTNNNNNAGG 1 cut(s) 780
XapI RAATTY 2 cut(s) 28, 1346
XceI RCATGY 1 cut(s) 820
XspI CTAG 4 cut(s) 654, 668, 1008, 1567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.