pycom05g04880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0010962
Physical Location & Seq
Reverse (-)
5771812 .. 5773580
1769 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 651 bp
ATGTTGCCCGCATTGTTTAGAACCGGCAAAAAAGAAAATGGCGGCAGCAGTAAGAGTTCCAACCTGTCACCGGCTACACCTCCCTACACCACCACCACCACCACCACCACCACCACCACCACCATATTCTTCCTTCTCCCTTTTCTTCAAACCCCTTGTTACCTCCACCACCACCACCATTGCATTCACGCATCTCCACATCCCACGCCGTACACTTATCTCCCATTCCCTTCCTTCCTTCTCGTCTCGCCCCCTCTTCTTCTGCCACCCTCCCACCGCTCCCCACTCTCCTCCTCCCCCAAGGCCTCTTTACAAGAAGAAGCACAAACCCATCAACTCGAAATTCCAGAAGATAATAATAATGGTGAAGAAATTGAGATCGAAATTGAGAACTCGGATAATAAAGAGGATGGCCAAGTGAGTTCGGATCCTACACCTGCTCTGAAGAGAGATGGGGTGAAGCCGCCGACGCTGACGGTGAAAGAAAAGAAGGAACTTGCGTCTTATGCTCACAGCTTGGGGAAGAAGCTCAAGTCCCAGCTGGTGGGGAAGCCCGGCTTGACAGCCAGCGTCGCCGCTTCTTTTATAGAGAACCTTGAATCCAGTGAGCTTCTCAAGGTGAAATTCACGGGACATGTCCTGGTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.53

Weight (kDa)

6.59

Isoelectric Point (pI)

61.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 158 - 209 3.3e-07 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21350 AT4G39040 AT4G39040
fragaria_vesca FvH4_2g10110
malus_domestica MD05G1057700.v1.1 MD10G1065400.v1.1
prunus_persica Prupe.8G087400_v2.0.a1
pyrus_communis pycom05g04880
rosa_chinensis RchiOBHm_Chr6g0267071
rosa_laevigata RLG00000014044
rosa_multiflora Rmu_co8165610.1_g000001 Rmu_sc0002938.1_g000055 Rmu_ssc0000388.1_g000005
rosa_roxburghii Rroxscaffold_7G00201170
rosa_rugosa Rorug06G0028900
rosa_samantha Rh6AG150500 Rh6BG151300 Rh6CG146700 Rh6DG135400
rosa_wichuraiana Rw6G013040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 445
Acc36I ACCTGC 1 cut(s) 445
AccB7I CCANNNNNTGG 1 cut(s) 544
AccBSI CCGCTC 1 cut(s) 279
AciI CCGC 5 cut(s) 9, 42, 277, 464, 576
AclWI GGATC 2 cut(s) 422, 435
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 2 cut(s) 342, 623
AcuI CTGAAG 1 cut(s) 464
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 70, 544
AflIII ACRYGT 1 cut(s) 634
AgsI TTSAA 2 cut(s) 149, 599
AjnI CCWGG 1 cut(s) 639
AloI GAACNNNNNNTCC 2 cut(s) 584, 616
AluBI AGCT 5 cut(s) 516, 529, 541, 610, 648
AluI AGCT 5 cut(s) 516, 529, 541, 610, 648
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 2 cut(s) 422, 435
AoxI GGCC 2 cut(s) 303, 412
ApeKI GCWGC 1 cut(s) 45
ApoI RAATTY 2 cut(s) 342, 623
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 5 cut(s) 60, 377, 469, 490, 631
BalI TGGCCA 1 cut(s) 414
BamHI GGATCC 1 cut(s) 427
BbvI GCAGC 1 cut(s) 57
BccI CCATC 3 cut(s) 339, 404, 446
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 641
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 1 cut(s) 649
BfuAI ACCTGC 1 cut(s) 445
BisI GCNGC 4 cut(s) 43, 46, 464, 576
BlsI GCNGC 4 cut(s) 44, 47, 465, 577
Bme1390I CCNGG 2 cut(s) 555, 641
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 2 cut(s) 555, 641
BmsI GCATC 1 cut(s) 200
BpuEI CTTGAG 2 cut(s) 515, 599
BpuMI CCSGG 1 cut(s) 555
BsaJI CCNNGG 1 cut(s) 300
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 544
Bse118I RCCGGY 2 cut(s) 23, 70
Bse1I ACTGG 1 cut(s) 603
Bse3DI GCAATG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 199, 415
BseLI CCNNNNNNNGG 2 cut(s) 70, 544
BseMI GCAATG 1 cut(s) 178
BseNI ACTGG 1 cut(s) 603
BseRI GAGGAG 2 cut(s) 280, 283
BseXI GCAGC 1 cut(s) 57
BseYI CCCAGC 1 cut(s) 537
BshFI GGCC 2 cut(s) 305, 414
BsiSI CCGG 3 cut(s) 24, 71, 555
BslFI GGGAC 2 cut(s) 520, 645
BslI CCNNNNNNNGG 2 cut(s) 70, 544
BsmAI GTCTC 1 cut(s) 250
BsmBI CGTCTC 1 cut(s) 250
BsmFI GGGAC 2 cut(s) 520, 645
BsmI GAATGC 1 cut(s) 183
BsnI GGCC 2 cut(s) 305, 414
Bsp143I GATC 2 cut(s) 378, 427
BspACI CCGC 5 cut(s) 9, 42, 277, 464, 576
BspANI GGCC 2 cut(s) 305, 414
BspLI GGNNCC 1 cut(s) 429
BspMI ACCTGC 1 cut(s) 445
BspPI GGATC 2 cut(s) 422, 435
BsrBI CCGCTC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 178
BsrFI RCCGGY 2 cut(s) 23, 70
BsrI ACTGG 1 cut(s) 603
BssAI RCCGGY 2 cut(s) 23, 70
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 2 cut(s) 378, 427
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 2 cut(s) 261, 440
BstC8I GCNNGC 2 cut(s) 9, 568
BstF5I GGATG 2 cut(s) 199, 415
BstKTI GATC 2 cut(s) 381, 430
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 2 cut(s) 378, 427
BstMWI GCNNNNNNNGC 3 cut(s) 469, 506, 572
BstNI CCWGG 1 cut(s) 641
BstNSI RCATGY 1 cut(s) 638
BstSCI CCNGG 2 cut(s) 553, 639
BstV1I GCAGC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuRI GGCC 2 cut(s) 305, 414
BtsCI GGATG 2 cut(s) 199, 415
BtsIMutI CAGTG 1 cut(s) 610
BveI ACCTGC 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 9, 568
Cfr10I RCCGGY 2 cut(s) 23, 70
CseI GACGC 3 cut(s) 478, 489, 559
Csp6I GTAC 1 cut(s) 211
CspCI CAANNNNNGTGG 2 cut(s) 161, 196
CviAII CATG 1 cut(s) 635
CviQI GTAC 1 cut(s) 211
DpnI GATC 2 cut(s) 380, 429
DpnII GATC 2 cut(s) 378, 427
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 261, 440
EarI CTCTTC 2 cut(s) 261, 440
Eco130I CCWWGG 1 cut(s) 300
Eco147I AGGCCT 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 464
EcoRII CCWGG 1 cut(s) 639
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 1 cut(s) 638
FaiI YATR 4 cut(s) 125, 507, 587, 636
FalI AAGNNNNNCTT 2 cut(s) 542, 574
FaqI GGGAC 2 cut(s) 520, 645
FatI CATG 1 cut(s) 634
FauI CCCGC 1 cut(s) 16
Fnu4HI GCNGC 4 cut(s) 43, 46, 464, 576
FokI GGATG 2 cut(s) 186, 422
Fsp4HI GCNGC 4 cut(s) 43, 46, 464, 576
FspBI CTAG 1 cut(s) 649
GluI GCNGC 4 cut(s) 43, 46, 464, 576
GsaI CCCAGC 1 cut(s) 541
HaeIII GGCC 2 cut(s) 305, 414
HapII CCGG 3 cut(s) 24, 71, 555
HgaI GACGC 3 cut(s) 478, 489, 559
Hin1II CATG 1 cut(s) 638
HinfI GANTC 1 cut(s) 599
HpaII CCGG 3 cut(s) 24, 71, 555
HphI GGTGA 5 cut(s) 60, 377, 469, 490, 631
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 3 cut(s) 397, 427, 444
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 1 cut(s) 213
Hpy99I CGWCG 2 cut(s) 472, 575
HpyAV CCTTC 5 cut(s) 143, 240, 244, 248, 484
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4V TGCA 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 3 cut(s) 469, 506, 572
Hsp92II CATG 1 cut(s) 638
Kzo9I GATC 2 cut(s) 378, 427
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 1 cut(s) 200
MaeI CTAG 1 cut(s) 649
MaeIII GTNAC 2 cut(s) 66, 158
MalI GATC 2 cut(s) 380, 429
MbiI CCGCTC 1 cut(s) 279
MboI GATC 2 cut(s) 378, 427
MboII GAAGA 9 cut(s) 121, 137, 248, 251, 329, 362, 380, 457, 535
MflI RGATCY 1 cut(s) 427
MlsI TGGCCA 1 cut(s) 414
MluCI AATT 4 cut(s) 342, 372, 384, 623
MluNI TGGCCA 1 cut(s) 414
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 8 cut(s) 90, 173, 264, 280, 301, 304, 316, 400
Mox20I TGGCCA 1 cut(s) 414
MscI TGGCCA 1 cut(s) 414
Msp20I TGGCCA 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 541
MspI CCGG 3 cut(s) 24, 71, 555
MspR9I CCNGG 2 cut(s) 555, 641
Mva1269I GAATGC 1 cut(s) 183
MvaI CCWGG 1 cut(s) 641
MwoI GCNNNNNNNGC 3 cut(s) 469, 506, 572
NciI CCSGG 1 cut(s) 555
NdeII GATC 2 cut(s) 378, 427
NlaIII CATG 1 cut(s) 638
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 66
NspI RCATGY 1 cut(s) 638
PaqCI CACCTGC 1 cut(s) 445
PceI AGGCCT 1 cut(s) 305
PciI ACATGT 1 cut(s) 634
PctI GAATGC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 599
PflMI CCANNNNNTGG 1 cut(s) 544
PkrI GCNGC 4 cut(s) 44, 47, 465, 577
PscI ACATGT 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 639
PspFI CCCAGC 1 cut(s) 537
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 1 cut(s) 429
PsuI RGATCY 1 cut(s) 427
PvuII CAGCTG 1 cut(s) 541
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SatI GCNGC 4 cut(s) 43, 46, 464, 576
Sau3AI GATC 2 cut(s) 378, 427
ScrFI CCNGG 2 cut(s) 555, 641
SfaNI GCATC 1 cut(s) 200
SmlI CTYRAG 2 cut(s) 530, 614
SmoI CTYRAG 2 cut(s) 530, 614
Sse9I AATT 4 cut(s) 342, 372, 384, 623
SseBI AGGCCT 1 cut(s) 305
SsiI CCGC 5 cut(s) 9, 42, 277, 464, 576
SspMI CTAG 1 cut(s) 649
StuI AGGCCT 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 553, 639
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 478
TaqI TCGA 2 cut(s) 339, 381
TasI AATT 4 cut(s) 342, 372, 384, 623
TauI GCSGC 3 cut(s) 45, 466, 578
TfiI GAWTC 1 cut(s) 599
TscAI CASTG 1 cut(s) 610
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 66
TspRI CASTG 1 cut(s) 610
Van91I CCANNNNNTGG 1 cut(s) 544
XapI RAATTY 2 cut(s) 342, 623
XceI RCATGY 1 cut(s) 638
XspI CTAG 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.