pycom05g07420

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0010739
Physical Location & Seq
Forward (+)
10407267 .. 10407793
527 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
ATGGCAGGAGGAGAAGGAGGAAGACCTTTGGAGCAAACACCAACTTGGGCCGTTGTCGATGTTTGTTTTGTTTCGGTTTTGATTTTGGTTTCGATCAGATCACATCGAATATTTCATTCATTTAATTGGAAAGGTTTCCTTTCACATATAATTAGGTTAATTTCACCTTATGAATTTAATTGCACTCCTTCCGGTGGTTGCCAGAGAAACAAAAGACCATTAGGGCTCTTATATTTGCTTCTAACAGTAGGACAAGACCGCATTTTAGATATATGTACATCGAAGGCTGTTGGAGCAACTTGGCATCCATGCAATAATAAGCAATATGTCAGATCAGACAAAGGCAAAGATAAGAGTAGTGCTTCAGGTGACAACCCCCGGAGAAGGCTTCTCTCAGCCTTGGATTCCAGTAGGGGGTGGCCGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

143

Amino Acids

15.83

Weight (kDa)

9.76

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 74 - 136 1.4e-09 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010739)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42560 AT1G42560 AT2G33670
fragaria_vesca FvH4_5g25860 FvH4_5g25860
malus_domestica MD06G1005800.v1.1 MD10G1233000.v1.1 MD11G1034900.v1.1 MD17G1274600.v1.1
prunus_persica Prupe.5G007100_v2.0.a1
pyrus_communis pycom04g09600 pycom05g07420
rosa_chinensis RchiOBHm_Chr7g0216341
rosa_laevigata RLG00000002580
rosa_roxburghii Rroxscaffold_3G00243310
rosa_rugosa Rorug07G0160000
rosa_samantha Rh7AG297500 Rh7CG317700 Rh7DG299900
rosa_wichuraiana Rw7G025310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 259
AcoI YGGCCR 1 cut(s) 419
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 348
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 3 cut(s) 194, 384, 414
AoxI GGCC 2 cut(s) 48, 419
ApoI RAATTY 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 48
AsuC2I CCSGG 1 cut(s) 379
AsuHPI GGTGA 2 cut(s) 156, 380
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 35
BcnI CCSGG 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 379
BmsI GCATC 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 377, 399
BsaWI WCCGGW 1 cut(s) 191
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 384, 414
Bse1I ACTGG 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 377, 399
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 3 cut(s) 194, 384, 414
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 1 cut(s) 408
BseRI GAGGAG 1 cut(s) 24
BshFI GGCC 2 cut(s) 50, 421
BsiSI CCGG 2 cut(s) 192, 379
BslI CCNNNNNNNGG 3 cut(s) 194, 384, 414
BsnI GGCC 2 cut(s) 50, 421
Bsp1286I GDGCHC 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 275
Bsp143I GATC 3 cut(s) 93, 98, 332
BspACI CCGC 1 cut(s) 259
BspANI GGCC 2 cut(s) 50, 421
BspCNI CTCAG 1 cut(s) 407
BsrGI TGTACA 1 cut(s) 275
BsrI ACTGG 1 cut(s) 408
BssECI CCNNGG 2 cut(s) 377, 399
BssMI GATC 3 cut(s) 93, 98, 332
BssT1I CCWWGG 1 cut(s) 399
Bst4CI ACNGT 1 cut(s) 247
BstAUI TGTACA 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 394
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 3 cut(s) 96, 101, 335
BstMBI GATC 3 cut(s) 93, 98, 332
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 377
BstV2I GAAGAC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 50, 421
BtsCI GGATG 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 309
CviJI RGCY 6 cut(s) 50, 226, 287, 388, 398, 421
CviKI_1 RGCY 6 cut(s) 50, 226, 287, 388, 398, 421
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 394
DpnI GATC 3 cut(s) 95, 100, 334
DpnII GATC 3 cut(s) 93, 98, 332
EaeI YGGCCR 1 cut(s) 419
Eco130I CCWWGG 1 cut(s) 399
Eco24I GRGCYC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 1 cut(s) 312
FaiI YATR 8 cut(s) 147, 149, 171, 232, 272, 274, 310, 327
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FatI CATG 1 cut(s) 308
FokI GGATG 1 cut(s) 291
FriOI GRGCYC 1 cut(s) 228
HaeIII GGCC 2 cut(s) 50, 421
HapII CCGG 2 cut(s) 192, 379
Hin1II CATG 1 cut(s) 312
HinfI GANTC 1 cut(s) 404
HpaII CCGG 2 cut(s) 192, 379
HphI GGTGA 2 cut(s) 156, 380
Hpy188I TCNGA 3 cut(s) 98, 332, 337
HpyAV CCTTC 4 cut(s) 8, 198, 277, 378
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 2 cut(s) 183, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 394
Hsp92II CATG 1 cut(s) 312
Kzo9I GATC 3 cut(s) 93, 98, 332
LmnI GCTCC 2 cut(s) 31, 293
LpnPI CCDG 5 cut(s) 205, 215, 351, 392, 421
LweI GCATC 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 368
MalI GATC 3 cut(s) 95, 100, 334
MboI GATC 3 cut(s) 93, 98, 332
MboII GAAGA 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 5 cut(s) 124, 150, 159, 173, 178
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 1 cut(s) 11
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 3 cut(s) 123, 158, 177
MspI CCGG 2 cut(s) 192, 379
MspR9I CCNGG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 293
NciI CCSGG 1 cut(s) 379
NdeII GATC 3 cut(s) 93, 98, 332
NlaIII CATG 1 cut(s) 312
NmuCI GTSAC 1 cut(s) 368
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 404
PspPI GGNCC 1 cut(s) 48
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 3 cut(s) 123, 158, 177
Sau3AI GATC 3 cut(s) 93, 98, 332
Sau96I GGNCC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 1 cut(s) 228
SetI ASST 5 cut(s) 28, 136, 158, 169, 370
SfaNI GCATC 1 cut(s) 313
Sse9I AATT 5 cut(s) 124, 150, 159, 173, 178
SsiI CCGC 1 cut(s) 259
SspI AATATT 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 377
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 4 cut(s) 57, 92, 106, 281
TasI AATT 5 cut(s) 124, 150, 159, 173, 178
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 3 cut(s) 123, 158, 177
Tru9I TTAA 3 cut(s) 123, 158, 177
TseFI GTSAC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 3 cut(s) 104, 108, 186
XapI RAATTY 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.