Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007271

Physical Location & Seq

Genomic Coordinates Reverse (-)

18202965 .. 18204800

Gene Structure 1836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCATATGCACAGGATCCTAGCATTAAGGAACTAGCTGAACAGATATCAAGAACGATCGATCCTTCATTCATTCAGATGGCAGACCAACTTCAGAAAATTTTTCAAGGTGTGTCAGTTGATGAAGGTGTCCCTCAGTTTGATAGCCAACAATACTATTCCACCATGCAACAGGTTATGCAGAATCCTCAGTTCATGACCCTGGCTGAGCGCCTCGGTAATGCATTGATGCAGGATCCATCTATGAATACTATGCTTGAGAGTTTCGCCAATCCATCAAACAAAGATCAGCTTGAGGAACGCATGTCACGTATCAAAGAAGATCCTTCTTTGAAGCCTATTTTGGAAGAAATAGAAACTGTTGGTCCAGCTGCTATGATGAGATACTGGAACGATAAAGATGTTTTGCAGAAGTTGGGAGAAGCAATGGGTCTTGCAGTTGGGGATGCAGCTACTTCTGCTGAACCACCAGAAGAAGCTGAAGATGCCGGAAATGAAGATGAATCAATTGTTCATCAAACTGCTAGTGTTGGTGATGTGGAGGGTTTGAAAGCTGCCCTAGCCTCTGGTGCTGACAAGGATGAGGAAGATTCAGAAGGGAGGACAGCATTACATTTTGCATGTGGATATGGTGAGGTGAAGTGTGCTCAAGTTCTTCTCGAGGCTGGAGCAAGAGTTGATGCTCTTGATAAGAACAAAAACACCGCACTTCATTATGCAGCCGGTTATGGCAGGAAGGAATGCGTGGCACTTCTACTTGAGAATGGCGCAGCTGTTACTCTCCAGAACATGGATGGCAAGACTCCGATCGATGTTGCCAAGCTGAACAACCAAAACGACGTACTAAAGTTGCTCGAGAAGGACGCCTTCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009941 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0019867 GO:0030941 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031326 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042170 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051861 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:0097367 GO:0098588 GO:0098805 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4

Protein Analysis

292

Amino Acids

31.77

Weight (kDa)

4.38

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STI1-HOP_DP	PF17830	100 - 144	7.6e-09	STI1/HOP, DP domain
Ank_KRIT1	PF24521	166 - 280	3.2e-06	KRIT1 ankyrin-repeats domain
Ank_2	PF12796	172 - 262	5.3e-20	Ankyrin repeats (3 copies)
Ank	PF00023	200 - 231	1.1e-06	Ankyrin repeat
Ank_4	PF13637	207 - 253	4.4e-09	Ankyrin repeats (many copies)
Ank_5	PF13857	219 - 273	9.7e-11	Ankyrin repeats (many copies)
Ank_2	PF12796	227 - 286	2.2e-10	Ankyrin repeats (3 copies)
Ank	PF00023	232 - 263	7.6e-07	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17390 AT4G35450 AT4G35450 AT4G35450 AT4G35450 AT4G35450
fragaria_vesca	FvH4_2g17270 FvH4_2g17270
malus_domestica	MD05G1151600.v1.1 MD10G1145800.v1.1
prunus_persica	Prupe.8G184200_v2.0.a1
pyrus_communis	pycom05g14610 pycom05g14650 pycom10g12580
rosa_chinensis	RchiOBHm_Chr6g0281771
rosa_laevigata	RLG00000012936
rosa_multiflora	Rmu_ssc0000126.1_g000046
rosa_roxburghii	Rroxscaffold_7G00186810
rosa_rugosa	Rorug06G0143600 Rorug06G0143600
rosa_samantha	Rh6AG256300 Rh6BG259200 Rh6CG258200 Rh6DG250300
rosa_wichuraiana	Rw6G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	790
AciI	CCGC	1 cut(s)	705
AclWI	GGATC	6 cut(s)	11, 24, 56, 230, 243, 317
AcsI	RAATTY	1 cut(s)	99
AcuI	CTGAAG	2 cut(s)	77, 501
AcyI	GRCGYC	1 cut(s)	864
AfaI	GTAC	1 cut(s)	843
AfiI	CCNNNNNNNGG	1 cut(s)	790
AgsI	TTSAA	3 cut(s)	107, 334, 550
AjnI	CCWGG	1 cut(s)	201
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AloI	GAACNNNNNNTCC	2 cut(s)	46, 78
AluBI	AGCT	8 cut(s)	38, 292, 371, 452, 479, 554, 773, 823
AluI	AGCT	8 cut(s)	38, 292, 371, 452, 479, 554, 773, 823
Alw21I	GWGCWC	1 cut(s)	649
AlwI	GGATC	6 cut(s)	11, 24, 56, 230, 243, 317
Ama87I	CYCGRG	2 cut(s)	659, 854
ApeKI	GCWGC	5 cut(s)	371, 449, 554, 719, 770
ApoI	RAATTY	1 cut(s)	99
AspLEI	GCGC	2 cut(s)	213, 770
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	3 cut(s)	545, 644, 649
AvaI	CYCGRG	2 cut(s)	659, 854
AvaII	GGWCC	1 cut(s)	365
BamHI	GGATCC	2 cut(s)	16, 235
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	5 cut(s)	358, 461, 541, 731, 782
BccI	CCATC	4 cut(s)	73, 247, 283, 788
BciT130I	CCWGG	1 cut(s)	203
BfaI	CTAG	4 cut(s)	21, 35, 525, 560
BfoI	RGCGCY	1 cut(s)	214
BisI	GCNGC	5 cut(s)	372, 450, 555, 720, 771
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	5 cut(s)	373, 451, 556, 721, 772
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	365
BmeT110I	CYCGRG	2 cut(s)	659, 854
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	2 cut(s)	18, 237
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	4 cut(s)	219, 436, 475, 670
BpmI	CTGGAG	2 cut(s)	687, 767
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	4 cut(s)	278, 314, 633, 779
Bsa29I	ATCGAT	2 cut(s)	60, 810
BsaAI	YACGTR	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	864
BsaJI	CCNNGG	2 cut(s)	201, 214
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	790
Bse118I	RCCGGY	1 cut(s)	722
Bse1I	ACTGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	203
BseCI	ATCGAT	2 cut(s)	60, 810
BseDI	CCNNGG	2 cut(s)	201, 214
BseGI	GGATG	3 cut(s)	451, 586, 799
BseLI	CCNNNNNNNGG	1 cut(s)	790
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	3 cut(s)	149, 198, 203
BseNI	ACTGG	1 cut(s)	392
BseXI	GCAGC	5 cut(s)	358, 461, 541, 731, 782
Bsh1285I	CGRYCG	2 cut(s)	60, 810
BshVI	ATCGAT	2 cut(s)	60, 810
BsiEI	CGRYCG	2 cut(s)	60, 810
BsiHKAI	GWGCWC	1 cut(s)	649
BsiHKCI	CYCGRG	2 cut(s)	659, 854
BsiSI	CCGG	2 cut(s)	489, 723
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	790
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	746
BsoBI	CYCGRG	2 cut(s)	659, 854
Bsp1286I	GDGCHC	1 cut(s)	649
Bsp143I	GATC	7 cut(s)	16, 57, 61, 235, 286, 322, 807
Bsp1720I	GCTNAGC	1 cut(s)	207
BspACI	CCGC	1 cut(s)	705
BspCNI	CTCAG	3 cut(s)	148, 199, 202
BspDI	ATCGAT	2 cut(s)	60, 810
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	18, 237
BspPI	GGATC	6 cut(s)	11, 24, 56, 230, 243, 317
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	392
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	2 cut(s)	201, 214
BssMI	GATC	7 cut(s)	16, 57, 61, 235, 286, 322, 807
BssNI	GRCGYC	1 cut(s)	864
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	361
BstACI	GRCGYC	1 cut(s)	864
BstBAI	YACGTR	1 cut(s)	311
BstDEI	CTNAG	3 cut(s)	135, 189, 207
BstF5I	GGATG	3 cut(s)	451, 586, 799
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	2 cut(s)	213, 770
BstKTI	GATC	7 cut(s)	19, 60, 64, 238, 289, 325, 810
BstMBI	GATC	7 cut(s)	16, 57, 61, 235, 286, 322, 807
BstMCI	CGRYCG	2 cut(s)	60, 810
BstMWI	GCNNNNNNNGC	4 cut(s)	458, 485, 560, 569
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	2 cut(s)	307, 624
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	5 cut(s)	358, 461, 541, 731, 782
BstX2I	RGATCY	3 cut(s)	16, 235, 322
BstYI	RGATCY	3 cut(s)	16, 235, 322
Bsu15I	ATCGAT	2 cut(s)	60, 810
BsuTUI	ATCGAT	2 cut(s)	60, 810
BtsCI	GGATG	3 cut(s)	451, 586, 799
CciI	TCATGA	1 cut(s)	195
CfoI	GCGC	2 cut(s)	213, 770
Cfr10I	RCCGGY	1 cut(s)	722
Cfr13I	GGNCC	1 cut(s)	365
ClaI	ATCGAT	2 cut(s)	60, 810
Csp6I	GTAC	1 cut(s)	842
CviAII	CATG	5 cut(s)	166, 196, 304, 621, 790
CviQI	GTAC	1 cut(s)	842
DdeI	CTNAG	3 cut(s)	135, 189, 207
DpnI	GATC	7 cut(s)	18, 59, 63, 237, 288, 324, 809
DpnII	GATC	7 cut(s)	16, 57, 61, 235, 286, 322, 807
Eco32I	GATATC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	2 cut(s)	77, 501
Eco88I	CYCGRG	2 cut(s)	659, 854
EcoRII	CCWGG	1 cut(s)	201
EcoRV	GATATC	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	226
FaeI	CATG	5 cut(s)	169, 199, 307, 624, 793
FalI	AAGNNNNNCTT	3 cut(s)	276, 308, 851
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	5 cut(s)	165, 195, 303, 620, 789
FauNDI	CATATG	1 cut(s)	7
Fnu4HI	GCNGC	5 cut(s)	372, 450, 555, 720, 771
FokI	GGATG	3 cut(s)	458, 593, 806
Fsp4HI	GCNGC	5 cut(s)	372, 450, 555, 720, 771
FspBI	CTAG	4 cut(s)	21, 35, 525, 560
GlaI	GCGC	2 cut(s)	212, 769
GluI	GCNGC	5 cut(s)	372, 450, 555, 720, 771
GsuI	CTGGAG	2 cut(s)	687, 767
HaeII	RGCGCY	1 cut(s)	214
HapII	CCGG	2 cut(s)	489, 723
HhaI	GCGC	2 cut(s)	213, 770
Hin1I	GRCGYC	1 cut(s)	864
Hin1II	CATG	5 cut(s)	169, 199, 307, 624, 793
Hin6I	GCGC	2 cut(s)	211, 768
HinP1I	GCGC	2 cut(s)	211, 768
HinfI	GANTC	4 cut(s)	184, 503, 590, 802
HpaII	CCGG	2 cut(s)	489, 723
HphI	GGTGA	3 cut(s)	545, 644, 649
Hpy188I	TCNGA	4 cut(s)	78, 96, 595, 807
Hpy188III	TCNNGA	6 cut(s)	51, 196, 659, 686, 784, 856
Hpy99I	CGWCG	1 cut(s)	842
HpyAV	CCTTC	6 cut(s)	75, 119, 336, 590, 730, 853
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	2 cut(s)	310, 840
HpyF10VI	GCNNNNNNNGC	4 cut(s)	458, 485, 560, 569
HpyF3I	CTNAG	3 cut(s)	135, 189, 207
HpySE526I	ACGT	2 cut(s)	310, 840
Hsp92I	GRCGYC	1 cut(s)	864
Hsp92II	CATG	5 cut(s)	169, 199, 307, 624, 793
HspAI	GCGC	2 cut(s)	211, 768
Kzo9I	GATC	7 cut(s)	16, 57, 61, 235, 286, 322, 807
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	5 cut(s)	358, 461, 541, 731, 782
LweI	GCATC	4 cut(s)	219, 436, 475, 670
MaeI	CTAG	4 cut(s)	21, 35, 525, 560
MaeII	ACGT	2 cut(s)	310, 840
MaeIII	GTNAC	2 cut(s)	306, 775
MalI	GATC	7 cut(s)	18, 59, 63, 237, 288, 324, 809
MboI	GATC	7 cut(s)	16, 57, 61, 235, 286, 322, 807
MboII	GAAGA	7 cut(s)	332, 359, 485, 494, 509, 599, 647
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	3 cut(s)	16, 235, 322
MhlI	GDGCHC	1 cut(s)	649
MluCI	AATT	2 cut(s)	99, 507
MlyI	GAGTC	1 cut(s)	796
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	77
MspA1I	CMGCKG	2 cut(s)	371, 773
MspI	CCGG	2 cut(s)	489, 723
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	746
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	4 cut(s)	458, 485, 560, 569
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	7 cut(s)	16, 57, 61, 235, 286, 322, 807
NlaIII	CATG	5 cut(s)	169, 199, 307, 624, 793
NlaIV	GGNNCC	2 cut(s)	18, 237
NmuCI	GTSAC	1 cut(s)	306
NsiI	ATGCAT	1 cut(s)	226
NspI	RCATGY	2 cut(s)	307, 624
PaeR7I	CTCGAG	2 cut(s)	659, 854
PagI	TCATGA	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	307
PctI	GAATGC	1 cut(s)	746
PfeI	GAWTC	3 cut(s)	184, 503, 590
PflMI	CCANNNNNTGG	1 cut(s)	790
PkrI	GCNGC	5 cut(s)	373, 451, 556, 721, 772
Ple19I	CGATCG	2 cut(s)	60, 810
PleI	GAGTC	1 cut(s)	796
PpsI	GAGTC	1 cut(s)	796
Ppu21I	YACGTR	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	18, 237
PspPI	GGNCC	1 cut(s)	365
PsuI	RGATCY	3 cut(s)	16, 235, 322
PvuI	CGATCG	2 cut(s)	60, 810
PvuII	CAGCTG	2 cut(s)	371, 773
RsaI	GTAC	1 cut(s)	843
RsaNI	GTAC	1 cut(s)	842
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	5 cut(s)	372, 450, 555, 720, 771
Sau3AI	GATC	7 cut(s)	16, 57, 61, 235, 286, 322, 807
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	1 cut(s)	796
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	649
SfaNI	GCATC	4 cut(s)	219, 436, 475, 670
Sfr274I	CTCGAG	2 cut(s)	659, 854
SinI	GGWCC	1 cut(s)	365
SlaI	CTCGAG	2 cut(s)	659, 854
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	6 cut(s)	257, 293, 648, 659, 758, 854
SmoI	CTYRAG	6 cut(s)	257, 293, 648, 659, 758, 854
Sse9I	AATT	2 cut(s)	99, 507
SsiI	CCGC	1 cut(s)	705
SspMI	CTAG	4 cut(s)	21, 35, 525, 560
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	2 cut(s)	313, 843
TaqI	TCGA	4 cut(s)	60, 660, 810, 855
TasI	AATT	2 cut(s)	99, 507
TfiI	GAWTC	3 cut(s)	184, 503, 590
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	5 cut(s)	371, 449, 554, 719, 770
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	9 cut(s)	57, 61, 138, 184, 260, 503, 510, 516, 701
Van91I	CCANNNNNTGG	1 cut(s)	790
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	99
XceI	RCATGY	2 cut(s)	307, 624
XcmI	CCANNNNNNNNNTGG	1 cut(s)	791
XhoI	CTCGAG	2 cut(s)	659, 854
XspI	CTAG	4 cut(s)	21, 35, 525, 560
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.