Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008331

Physical Location & Seq

Genomic Coordinates Forward (+)

26861977 .. 26865381

Gene Structure 3405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGACTTCTTCTGTGCGCCATCATTCCGATAATAGTGATTCTGATGACCAGCAAAGTCATTCAGAGTCTCAAGTTCATTCATCCTTACCTGCAATTGGAATGTCTCATCCCGGAGTACCAACCACAAATATGCAGTATGCAGTACCTCCACAAGTTGGAACGGGACACGCAGTGGCACCAGGAGCTTACCCCTATCCAGACCCTTACTACAGAAGCATCTTTGCTCCCTATGAAACACAGCCATATCCTTCACAGCCCTATGGGGCCGCGCAACCAACGGTTCATCTTCAGTTGATGGGAATCCAGCAAGCAGGTGTTCCACTGCCGTCAGATGCAGTTGAGGAACCTGTGTTTGTAAATGCAAAACAGTATCATGGTATCTTGCGACGTCGGCAGTCTCGTGCTAAAGCAGAATCTGAAAATAAAGCTCTTAAGAATCGTAAGCCATACTTGCATGAATCTCGACACCAGCATGCATTGAGAAGAGCTAGAGGATGCGGGGGTCGCTTTCTTAATGCAAAGAAAAATGAGAATGAACAGGATGAAATGACATCGGGTAACAAATCGCAGTCAAATATCAACTTGAACTCTGATAAAAATGAGCTTGCTTCCTCAGATCGAACGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

210

Amino Acids

23.1

Weight (kDa)

8.62

Isoelectric Point (pI)

68.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	115 - 170	4.3e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30500 AT1G30500
fragaria_vesca	FvH4_3g10080 FvH4_3g10080
malus_domestica	MD05G1273300.v1.1 MD10G1253300.v1.1
prunus_persica	Prupe.4G090200_v2.0.a1 Prupe.4G090200_v2.0.a1
pyrus_communis	pycom05g25500 pycom10g20900
rosa_chinensis	RchiOBHm_Chr5g0015971
rosa_laevigata	RLG00000032233
rosa_multiflora	Rmu_sc0000299.1_g000027 Rmu_sc0001878.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060650
rosa_rugosa	Rorug05G0030600 Rorug05G0030700 Rorug05G0030700
rosa_samantha	Rh5AG124000 Rh5BG122900 Rh5CG134300 Rh5DG122300
rosa_wichuraiana	Rw5G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
AatII	GACGTC	1 cut(s)	391
Acc36I	ACCTGC	2 cut(s)	97, 302
AccB1I	GGYRCC	1 cut(s)	175
AccB7I	CCANNNNNTGG	1 cut(s)	155
AccII	CGCG	1 cut(s)	269
AciI	CCGC	2 cut(s)	267, 498
AcuI	CTGAAG	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	388
AdeI	CACNNNGTG	1 cut(s)	172
AfaI	GTAC	2 cut(s)	117, 144
AfiI	CCNNNNNNNGG	2 cut(s)	95, 155
AflII	CTTAAG	1 cut(s)	431
AgsI	TTSAA	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	4 cut(s)	185, 428, 488, 604
AluI	AGCT	4 cut(s)	185, 428, 488, 604
Alw26I	GTCTC	3 cut(s)	72, 108, 402
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	1 cut(s)	264
AspLEI	GCGC	2 cut(s)	18, 271
AspS9I	GGNCC	1 cut(s)	264
AsuC2I	CCSGG	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	175
BauI	CACGAG	1 cut(s)	399
BccI	CCATC	2 cut(s)	27, 289
BceAI	ACGGC	1 cut(s)	310
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciT130I	CCWGG	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	3 cut(s)	72, 108, 402
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	208
BfrI	CTTAAG	1 cut(s)	431
BfuAI	ACCTGC	2 cut(s)	97, 302
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	111, 180
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	3 cut(s)	177, 265, 345
BmrFI	CCNGG	2 cut(s)	111, 180
BmsI	GCATC	3 cut(s)	225, 322, 485
BpuEI	CTTGAG	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 155
Bse8I	GATNNNNATC	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	180
BseGI	GGATG	4 cut(s)	80, 106, 500, 547
BseJI	GATNNNNATC	1 cut(s)	299
BseLI	CCNNNNNNNGG	2 cut(s)	95, 155
BseMII	CTCAG	1 cut(s)	627
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	95, 155
BsmAI	GTCTC	3 cut(s)	72, 108, 402
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	616
BspACI	CCGC	2 cut(s)	267, 498
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	626
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	3 cut(s)	177, 265, 345
BspMI	ACCTGC	2 cut(s)	97, 302
BspQI	GCTCTTC	1 cut(s)	478
BspT107I	GGYRCC	1 cut(s)	175
BspTI	CTTAAG	1 cut(s)	431
BssMI	GATC	1 cut(s)	616
BssNI	GRCGYC	1 cut(s)	388
BssSI	CACGAG	1 cut(s)	399
Bst2BI	CACGAG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	280, 369
Bst6I	CTCTTC	1 cut(s)	478
BstACI	GRCGYC	1 cut(s)	388
BstAFI	CTTAAG	1 cut(s)	431
BstC8I	GCNNGC	3 cut(s)	309, 474, 606
BstDEI	CTNAG	1 cut(s)	613
BstF5I	GGATG	4 cut(s)	80, 106, 500, 547
BstFNI	CGCG	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	18, 271
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	3 cut(s)	72, 108, 402
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 391, 451, 504
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	2 cut(s)	109, 178
BstSFI	CTRYAG	1 cut(s)	208
BstUI	CGCG	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	4 cut(s)	80, 106, 500, 547
BtsI	GCAGTG	2 cut(s)	177, 320
BtsIMutI	CAGTG	2 cut(s)	177, 320
BveI	ACCTGC	2 cut(s)	97, 302
Cac8I	GCNNGC	3 cut(s)	309, 474, 606
CaiI	CAGNNNCTG	1 cut(s)	416
CfoI	GCGC	2 cut(s)	18, 271
Cfr13I	GGNCC	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	116, 143
CviAII	CATG	3 cut(s)	374, 455, 473
CviJI	RGCY	8 cut(s)	185, 241, 256, 266, 428, 445, 488, 604
CviKI_1	RGCY	8 cut(s)	185, 241, 256, 266, 428, 445, 488, 604
CviQI	GTAC	2 cut(s)	116, 143
DdeI	CTNAG	1 cut(s)	613
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
DraIII	CACNNNGTG	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	478
FaeI	CATG	3 cut(s)	377, 458, 476
FaiI	YATR	9 cut(s)	131, 138, 231, 244, 261, 375, 448, 456, 474
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	3 cut(s)	373, 454, 472
FauI	CCCGC	1 cut(s)	491
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	4 cut(s)	67, 93, 507, 554
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	2 cut(s)	17, 270
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	2 cut(s)	18, 271
Hin1I	GRCGYC	1 cut(s)	388
Hin1II	CATG	3 cut(s)	377, 458, 476
Hin6I	GCGC	2 cut(s)	16, 269
HinP1I	GCGC	2 cut(s)	16, 269
HinfI	GANTC	6 cut(s)	38, 65, 300, 413, 436, 458
HpaII	CCGG	1 cut(s)	111
Hpy188I	TCNGA	7 cut(s)	28, 43, 64, 331, 418, 592, 616
Hpy188III	TCNNGA	2 cut(s)	197, 462
Hpy99I	CGWCG	2 cut(s)	390, 393
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	2 cut(s)	280, 369
HpyCH4IV	ACGT	2 cut(s)	388, 623
HpyCH4V	TGCA	8 cut(s)	92, 133, 140, 335, 362, 454, 476, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 391, 451, 504
HpyF3I	CTNAG	1 cut(s)	613
HpySE526I	ACGT	2 cut(s)	388, 623
Hsp92I	GRCGYC	1 cut(s)	388
Hsp92II	CATG	3 cut(s)	377, 458, 476
HspAI	GCGC	2 cut(s)	16, 269
Kzo9I	GATC	1 cut(s)	616
LguI	GCTCTTC	1 cut(s)	478
LmnI	GCTCC	2 cut(s)	182, 229
LweI	GCATC	3 cut(s)	225, 322, 485
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	2 cut(s)	388, 623
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	2 cut(s)	278, 495
MfeI	CAATTG	1 cut(s)	93
MluCI	AATT	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	4 cut(s)	156, 334, 485, 622
Mph1103I	ATGCAT	1 cut(s)	478
MseI	TTAA	2 cut(s)	432, 513
MslI	CAYNNNNRTG	2 cut(s)	128, 471
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	111, 180
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	4 cut(s)	182, 391, 451, 504
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	3 cut(s)	377, 458, 476
NlaIV	GGNNCC	3 cut(s)	177, 265, 345
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	476
PaeI	GCATGC	1 cut(s)	476
PaqCI	CACCTGC	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	1 cut(s)	397
PfeI	GAWTC	5 cut(s)	38, 300, 413, 436, 458
PflMI	CCANNNNNTGG	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	3 cut(s)	177, 265, 345
PspPI	GGNCC	1 cut(s)	264
PstNI	CAGNNNCTG	1 cut(s)	416
RsaI	GTAC	2 cut(s)	117, 144
RsaNI	GTAC	2 cut(s)	116, 143
RseI	CAYNNNNRTG	2 cut(s)	128, 471
SapI	GCTCTTC	1 cut(s)	478
SaqAI	TTAA	2 cut(s)	432, 513
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	111, 180
SfaNI	GCATC	3 cut(s)	225, 322, 485
SfcI	CTRYAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	128, 471
SmlI	CTYRAG	2 cut(s)	69, 431
SmoI	CTYRAG	2 cut(s)	69, 431
SphI	GCATGC	1 cut(s)	476
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	2 cut(s)	267, 498
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	109, 178
TaaI	ACNGT	2 cut(s)	280, 369
TaiI	ACGT	2 cut(s)	391, 626
TaqI	TCGA	2 cut(s)	463, 619
TasI	AATT	1 cut(s)	93
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	5 cut(s)	38, 300, 413, 436, 458
Tru1I	TTAA	2 cut(s)	432, 513
Tru9I	TTAA	2 cut(s)	432, 513
TscAI	CASTG	2 cut(s)	177, 327
TspDTI	ATGAA	7 cut(s)	65, 69, 246, 272, 471, 549, 558
TspRI	CASTG	2 cut(s)	177, 327
Van91I	CCANNNNNTGG	1 cut(s)	155
Vha464I	CTTAAG	1 cut(s)	431
XceI	RCATGY	1 cut(s)	476
XspI	CTAG	1 cut(s)	489
ZraI	GACGTC	1 cut(s)	389
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.