Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008331

Physical Location & Seq

Genomic Coordinates Reverse (-)

11729385 .. 11735500

Gene Structure 6116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G010710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGACTTCTTCTGTTCACGATCATTCCGATAGTAGTGAATCTGATGATCAGCAAAAGCATTCAGAGTCTCCGATGATTTCTTCCTCACCTGCACCTGGAATGTCTAATCCTGGAATTCCAGGCCCTATGCAGTATGTAGCCCCTCCACAGATTGGAGCAGGACATGCAGTGGCGCCAGGAGCCTACCCATATCCGGACCCTTACTACAGAAGCATCTTTGCTCCTTATGACACACAACCATATCCTCCACAACCCTATGGGGGGCAACCAACGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGAGTTCCATTGCCAACAGATGCAGTTGAGGAATCTGAAAACAAAGCTCTAAAATCTCGGAAGGTACTAATTTTTAGTGCATATCCCCTGCATCTCATGCTCAGTGAAAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

140

Amino Acids

15.1

Weight (kDa)

5.32

Isoelectric Point (pI)

64.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30500 AT1G30500
fragaria_vesca	FvH4_3g10080 FvH4_3g10080
malus_domestica	MD05G1273300.v1.1 MD10G1253300.v1.1
prunus_persica	Prupe.4G090200_v2.0.a1 Prupe.4G090200_v2.0.a1
pyrus_communis	pycom05g25500 pycom10g20900
rosa_chinensis	RchiOBHm_Chr5g0015971
rosa_laevigata	RLG00000032233
rosa_multiflora	Rmu_sc0000299.1_g000027 Rmu_sc0001878.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060650
rosa_rugosa	Rorug05G0030600 Rorug05G0030700 Rorug05G0030700
rosa_samantha	Rh5AG124000 Rh5BG122900 Rh5CG134300 Rh5DG122300
rosa_wichuraiana	Rw5G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	97
Acc36I	ACCTGC	1 cut(s)	97
AccB1I	GGYRCC	1 cut(s)	172
AccB7I	CCANNNNNTGG	1 cut(s)	152
AccIII	TCCGGA	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	114, 294
AcuI	CTGAAG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	5 cut(s)	95, 152, 193, 260, 261
AjnI	CCWGG	4 cut(s)	94, 109, 118, 175
AluBI	AGCT	2 cut(s)	305, 353
AluI	AGCT	2 cut(s)	305, 353
Alw26I	GTCTC	1 cut(s)	72
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	2 cut(s)	114, 294
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	3 cut(s)	122, 196, 274
AsuHPI	GGTGA	1 cut(s)	78
AvaII	GGWCC	2 cut(s)	196, 274
BanI	GGYRCC	1 cut(s)	172
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	4 cut(s)	96, 111, 120, 177
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	205
BfoI	RGCGCY	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	97
Bme1390I	CCNGG	4 cut(s)	96, 111, 120, 177
Bme18I	GGWCC	2 cut(s)	196, 274
BmgT120I	GGNCC	3 cut(s)	122, 196, 274
BmiI	GGNNCC	3 cut(s)	174, 181, 198
BmrFI	CCNGG	4 cut(s)	96, 111, 120, 177
BmsI	GCATC	3 cut(s)	222, 316, 406
BpmI	CTGGAG	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	173
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 152, 193, 260, 261
Bse3DI	GCAATG	1 cut(s)	314
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	4 cut(s)	96, 111, 120, 177
BseLI	CCNNNNNNNGG	5 cut(s)	95, 152, 193, 260, 261
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	194
BslI	CCNNNNNNNGG	5 cut(s)	95, 152, 193, 260, 261
BsmAI	GTCTC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	123
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	19, 46
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	420
BspEI	TCCGGA	1 cut(s)	193
BspLI	GGNNCC	3 cut(s)	174, 181, 198
BspMI	ACCTGC	1 cut(s)	97
BspT107I	GGYRCC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	314
BssMI	GATC	2 cut(s)	19, 46
BssNI	GRCGYC	1 cut(s)	173
Bst2UI	CCWGG	4 cut(s)	96, 111, 120, 177
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	173
BstAPI	GCANNNNNTGC	2 cut(s)	164, 403
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	407
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	22, 49
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	19, 46
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 179, 403
BstNI	CCWGG	4 cut(s)	96, 111, 120, 177
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	4 cut(s)	94, 109, 118, 175
BstSFI	CTRYAG	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	123
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 415
BveI	ACCTGC	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	3 cut(s)	122, 196, 274
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	2 cut(s)	164, 403
CviJI	RGCY	5 cut(s)	123, 140, 182, 305, 353
CviKI_1	RGCY	5 cut(s)	123, 140, 182, 305, 353
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	1 cut(s)	407
DinI	GGCGCC	1 cut(s)	174
DpnI	GATC	2 cut(s)	21, 48
DpnII	GATC	2 cut(s)	19, 46
Eco47I	GGWCC	2 cut(s)	196, 274
Eco57I	CTGAAG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRI	GAATTC	2 cut(s)	114, 294
EcoRII	CCWGG	4 cut(s)	94, 109, 118, 175
EgeI	GGCGCC	1 cut(s)	174
EheI	GGCGCC	1 cut(s)	174
FaeI	CATG	2 cut(s)	167, 406
FaiI	YATR	9 cut(s)	128, 135, 165, 190, 228, 241, 258, 388, 404
FatI	CATG	2 cut(s)	163, 402
FbaI	TGATCA	1 cut(s)	46
GlaI	GCGC	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	194
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	167, 406
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	3 cut(s)	38, 65, 338
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	6 cut(s)	28, 43, 64, 72, 343, 366
Hpy188III	TCNNGA	2 cut(s)	17, 194
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	6 cut(s)	92, 130, 167, 329, 386, 397
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 179, 403
HpyF3I	CTNAG	1 cut(s)	407
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	167, 406
HspAI	GCGC	1 cut(s)	173
KasI	GGCGCC	1 cut(s)	172
Kpn2I	TCCGGA	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	19, 46
LmnI	GCTCC	3 cut(s)	155, 179, 226
LweI	GCATC	3 cut(s)	222, 316, 406
MalI	GATC	2 cut(s)	21, 48
MboI	GATC	2 cut(s)	19, 46
MboII	GAAGA	2 cut(s)	72, 272
MluCI	AATT	3 cut(s)	114, 294, 375
Mly113I	GGCGCC	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	4 cut(s)	94, 153, 255, 328
MroI	TCCGGA	1 cut(s)	193
MseI	TTAA	1 cut(s)	287
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	4 cut(s)	96, 111, 120, 177
Mva1269I	GAATGC	1 cut(s)	58
MvaI	CCWGG	4 cut(s)	96, 111, 120, 177
MwoI	GCNNNNNNNGC	3 cut(s)	164, 179, 403
NarI	GGCGCC	1 cut(s)	173
NdeII	GATC	2 cut(s)	19, 46
NlaIII	CATG	2 cut(s)	167, 406
NlaIV	GGNNCC	3 cut(s)	174, 181, 198
NspI	RCATGY	1 cut(s)	167
PaqCI	CACCTGC	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	38, 338
PflMI	CCANNNNNTGG	1 cut(s)	152
PfoI	TCCNGGA	1 cut(s)	109
PleI	GAGTC	1 cut(s)	73
PluTI	GGCGCC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	73
Psp6I	CCWGG	4 cut(s)	94, 109, 118, 175
PspGI	CCWGG	4 cut(s)	94, 109, 118, 175
PspN4I	GGNNCC	3 cut(s)	174, 181, 198
PspPI	GGNCC	3 cut(s)	122, 196, 274
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	287
Sau3AI	GATC	2 cut(s)	19, 46
Sau96I	GGNCC	3 cut(s)	122, 196, 274
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	4 cut(s)	96, 111, 120, 177
SetI	ASST	5 cut(s)	91, 97, 307, 355, 372
SfaNI	GCATC	3 cut(s)	222, 316, 406
SfcI	CTRYAG	1 cut(s)	205
SfoI	GGCGCC	1 cut(s)	174
SinI	GGWCC	2 cut(s)	196, 274
Sse9I	AATT	3 cut(s)	114, 294, 375
SspDI	GGCGCC	1 cut(s)	172
StyD4I	CCNGG	4 cut(s)	94, 109, 118, 175
TaaI	ACNGT	1 cut(s)	274
TasI	AATT	3 cut(s)	114, 294, 375
TfiI	GAWTC	2 cut(s)	38, 338
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	2 cut(s)	174, 415
TspRI	CASTG	2 cut(s)	174, 415
Van91I	CCANNNNNTGG	1 cut(s)	152
VpaK11BI	GGWCC	2 cut(s)	196, 274
XapI	RAATTY	2 cut(s)	114, 294
XceI	RCATGY	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.