Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001878.1

Orthogroup ID

OG0008331

Physical Location & Seq

Genomic Coordinates Forward (+)

28584 .. 37132

Gene Structure 8549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001878.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgtatggcggctctgtccgtatcctcacctctgcagaccacccttggttaccaaccctcgctcatgacttccatcggagctctagagtcgaatttgcaacaacacgaaaggatcgtcagaaacagcaggagaaaaagccacattgttttggggctctccacctgcaacgcgtcctcatgacttcttctgttcacgatcattccgatagtagtgaatctgatgatcagcaaaagcattcagagtctccgatgatttcttccgcacctgcacctggaatgtctaatcctggaattccaggccctattcagtatgtagcccctccacagattggagcaggacatgcagtggcgccaggagcctacccatatccagacccttactacagaagcatctttgctccttatgacacacaaccatatcctccacaaccctatggggggcaaccaacggtccatcttcagttaatgggaattcagcaagcaggagttccattgccaacagatgcggttgaggaacctgtgtttgtaaatgcaaaacaatatcatggcatcttgcgacgtcggcagtctcgtgctaaagcagaatctgaaaacaaagctctaaaatctcggaagccttacttgcatgaatctcgacacctgcatgcactgagaagagctagaggatgtgggggtcggtttcttaatgcaaagaaagatgagaatgaacagagtgaaggagacaattcacaggcaattatcaacttgaactctgataaaaagagaggaaaaaaaaatggaagaaagagaaaccataggagacttcaccagagctcagtcactggtcgccggaatccggccaacttttgttggaatccggtgaccggcagccggattcccgtcaccgactatcaaaatactctaaagaagtctttcttaatccccgttaggagacttcaccggagctcagtcactggtcgccggaatccggccaacttttgttggaatccggtgaccggcagccggattcccgtcaccgactattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

341

Amino Acids

38.31

Weight (kDa)

10.1

Isoelectric Point (pI)

67.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30500 AT1G30500
fragaria_vesca	FvH4_3g10080 FvH4_3g10080
malus_domestica	MD05G1273300.v1.1 MD10G1253300.v1.1
prunus_persica	Prupe.4G090200_v2.0.a1 Prupe.4G090200_v2.0.a1
pyrus_communis	pycom05g25500 pycom10g20900
rosa_chinensis	RchiOBHm_Chr5g0015971
rosa_laevigata	RLG00000032233
rosa_multiflora	Rmu_sc0000299.1_g000027 Rmu_sc0001878.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060650
rosa_rugosa	Rorug05G0030600 Rorug05G0030700 Rorug05G0030700
rosa_samantha	Rh5AG124000 Rh5BG122900 Rh5CG134300 Rh5DG122300
rosa_wichuraiana	Rw5G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	171, 274, 648
AatII	GACGTC	1 cut(s)	562
Acc36I	ACCTGC	3 cut(s)	171, 274, 648
AccB1I	GGYRCC	1 cut(s)	349
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccII	CGCG	1 cut(s)	171
AciI	CCGC	3 cut(s)	9, 261, 506
AclWI	GGATC	1 cut(s)	120
AcoI	YGGCCR	2 cut(s)	837, 969
AcsI	RAATTY	3 cut(s)	92, 291, 471
AcuI	CTGAAG	1 cut(s)	443
AcyI	GRCGYC	2 cut(s)	350, 559
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	748
AjnI	CCWGG	4 cut(s)	271, 286, 295, 352
AluBI	AGCT	5 cut(s)	81, 599, 659, 813, 945
AluI	AGCT	5 cut(s)	81, 599, 659, 813, 945
Alw21I	GWGCWC	3 cut(s)	83, 815, 947
Alw26I	GTCTC	5 cut(s)	249, 573, 714, 793, 925
AlwI	GGATC	1 cut(s)	120
AlwNI	CAGNNNCTG	3 cut(s)	587, 821, 953
AoxI	GGCC	3 cut(s)	298, 837, 969
ApeKI	GCWGC	2 cut(s)	867, 999
ApoI	RAATTY	3 cut(s)	92, 291, 471
ArsI	GACNNNNNNTTYG	2 cut(s)	100, 132
Asp700I	GAANNNNTTC	1 cut(s)	911
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	2 cut(s)	299, 451
AsuHPI	GGTGA	7 cut(s)	19, 797, 871, 874, 929, 1003, 1006
AvaII	GGWCC	1 cut(s)	451
BanI	GGYRCC	1 cut(s)	349
BanII	GRGCYC	4 cut(s)	83, 157, 815, 947
BauI	CACGAG	1 cut(s)	570
Bbv12I	GWGCWC	3 cut(s)	83, 815, 947
BbvI	GCAGC	2 cut(s)	879, 1011
BccI	CCATC	2 cut(s)	81, 462
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	4 cut(s)	273, 288, 297, 354
BciVI	GTATCC	1 cut(s)	32
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	5 cut(s)	249, 573, 714, 793, 925
BfaI	CTAG	2 cut(s)	84, 660
BfmI	CTRYAG	2 cut(s)	33, 382
BfoI	RGCGCY	1 cut(s)	353
BfuAI	ACCTGC	3 cut(s)	171, 274, 648
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	10, 868, 1000
BlsI	GCNGC	3 cut(s)	11, 869, 1001
Bme1390I	CCNGG	4 cut(s)	273, 288, 297, 354
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	2 cut(s)	299, 451
BmiI	GGNNCC	3 cut(s)	351, 358, 516
BmrFI	CCNGG	4 cut(s)	273, 288, 297, 354
BmsI	GCATC	3 cut(s)	399, 493, 558
BsaHI	GRCGYC	2 cut(s)	350, 559
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	3 cut(s)	856, 939, 988
Bse118I	RCCGGY	2 cut(s)	863, 995
Bse1I	ACTGG	2 cut(s)	826, 958
Bse3DI	GCAATG	1 cut(s)	491
BseBI	CCWGG	4 cut(s)	273, 288, 297, 354
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	671
BseMI	GCAATG	1 cut(s)	491
BseMII	CTCAG	3 cut(s)	641, 828, 960
BseNI	ACTGG	2 cut(s)	826, 958
BseXI	GCAGC	2 cut(s)	879, 1011
BsgI	GTGCAG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	3 cut(s)	300, 839, 971
BshNI	GGYRCC	1 cut(s)	349
BsiHKAI	GWGCWC	3 cut(s)	83, 815, 947
BsmAI	GTCTC	5 cut(s)	249, 573, 714, 793, 925
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	3 cut(s)	300, 839, 971
Bsp1286I	GDGCHC	4 cut(s)	83, 157, 815, 947
Bsp143I	GATC	3 cut(s)	112, 196, 223
BspACI	CCGC	3 cut(s)	9, 261, 506
BspANI	GGCC	3 cut(s)	300, 839, 971
BspCNI	CTCAG	3 cut(s)	642, 827, 959
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	2 cut(s)	64, 177
BspLI	GGNNCC	3 cut(s)	351, 358, 516
BspMAI	CTGCAG	1 cut(s)	37
BspMI	ACCTGC	3 cut(s)	171, 274, 648
BspPI	GGATC	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	649
BspT107I	GGYRCC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	491
BsrFI	RCCGGY	2 cut(s)	863, 995
BsrI	ACTGG	2 cut(s)	826, 958
BssAI	RCCGGY	2 cut(s)	863, 995
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	3 cut(s)	112, 196, 223
BssNI	GRCGYC	2 cut(s)	350, 559
BssSI	CACGAG	1 cut(s)	570
BssT1I	CCWWGG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	570
Bst2UI	CCWGG	4 cut(s)	273, 288, 297, 354
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	1 cut(s)	649
BstACI	GRCGYC	2 cut(s)	350, 559
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	480, 645
BstDEI	CTNAG	3 cut(s)	650, 814, 946
BstEII	GGTNACC	3 cut(s)	48, 859, 991
BstF5I	GGATG	1 cut(s)	671
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	3 cut(s)	115, 199, 226
BstMAI	GTCTC	5 cut(s)	249, 573, 714, 793, 925
BstMBI	GATC	3 cut(s)	112, 196, 223
BstMWI	GCNNNNNNNGC	4 cut(s)	341, 356, 562, 622
BstNI	CCWGG	4 cut(s)	273, 288, 297, 354
BstNSI	RCATGY	2 cut(s)	344, 647
BstPI	GGTNACC	3 cut(s)	48, 859, 991
BstSCI	CCNGG	4 cut(s)	271, 286, 295, 352
BstSFI	CTRYAG	2 cut(s)	33, 382
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	879, 1011
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	3 cut(s)	300, 839, 971
BtsCI	GGATG	1 cut(s)	671
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	4 cut(s)	351, 647, 819, 951
BveI	ACCTGC	3 cut(s)	171, 274, 648
Cac8I	GCNNGC	2 cut(s)	480, 645
CaiI	CAGNNNCTG	3 cut(s)	587, 821, 953
CciI	TCATGA	2 cut(s)	64, 177
CfoI	GCGC	1 cut(s)	352
Cfr10I	RCCGGY	2 cut(s)	863, 995
Cfr13I	GGNCC	2 cut(s)	299, 451
CseI	GACGC	1 cut(s)	160
CviAII	CATG	6 cut(s)	65, 178, 341, 545, 626, 644
DdeI	CTNAG	3 cut(s)	650, 814, 946
DinI	GGCGCC	1 cut(s)	351
DpnI	GATC	3 cut(s)	114, 198, 225
DpnII	GATC	3 cut(s)	112, 196, 223
EaeI	YGGCCR	2 cut(s)	837, 969
Eam1104I	CTCTTC	1 cut(s)	649
EarI	CTCTTC	1 cut(s)	649
Ecl136II	GAGCTC	3 cut(s)	81, 813, 945
Eco130I	CCWWGG	1 cut(s)	44
Eco24I	GRGCYC	4 cut(s)	83, 157, 815, 947
Eco47I	GGWCC	1 cut(s)	451
Eco53kI	GAGCTC	3 cut(s)	81, 813, 945
Eco57I	CTGAAG	1 cut(s)	443
Eco91I	GGTNACC	3 cut(s)	48, 859, 991
EcoICRI	GAGCTC	3 cut(s)	81, 813, 945
EcoO109I	RGGNCCY	1 cut(s)	299
EcoO65I	GGTNACC	3 cut(s)	48, 859, 991
EcoRI	GAATTC	2 cut(s)	291, 471
EcoRII	CCWGG	4 cut(s)	271, 286, 295, 352
EcoT14I	CCWWGG	1 cut(s)	44
EcoT38I	GRGCYC	4 cut(s)	83, 157, 815, 947
EgeI	GGCGCC	1 cut(s)	351
EheI	GGCGCC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	6 cut(s)	68, 181, 344, 548, 629, 647
FalI	AAGNNNNNCTT	4 cut(s)	605, 637, 899, 931
FatI	CATG	6 cut(s)	64, 177, 340, 544, 625, 643
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	10, 868, 1000
FokI	GGATG	1 cut(s)	678
FriOI	GRGCYC	4 cut(s)	83, 157, 815, 947
Fsp4HI	GCNGC	3 cut(s)	10, 868, 1000
FspBI	CTAG	2 cut(s)	84, 660
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	3 cut(s)	10, 868, 1000
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	3 cut(s)	300, 839, 971
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	352
Hin1I	GRCGYC	2 cut(s)	350, 559
Hin1II	CATG	6 cut(s)	68, 181, 344, 548, 629, 647
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HphI	GGTGA	7 cut(s)	19, 797, 871, 874, 929, 1003, 1006
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	9 cut(s)	78, 120, 205, 220, 241, 249, 589, 612, 754
Hpy188III	TCNNGA	6 cut(s)	65, 84, 178, 194, 371, 633
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	2 cut(s)	561, 564
HpyAV	CCTTC	1 cut(s)	710
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	559
HpyF10VI	GCNNNNNNNGC	4 cut(s)	341, 356, 562, 622
HpyF3I	CTNAG	3 cut(s)	650, 814, 946
HpySE526I	ACGT	1 cut(s)	559
Hsp92I	GRCGYC	2 cut(s)	350, 559
Hsp92II	CATG	6 cut(s)	68, 181, 344, 548, 629, 647
HspAI	GCGC	1 cut(s)	350
KasI	GGCGCC	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	112, 196, 223
LguI	GCTCTTC	1 cut(s)	649
LmnI	GCTCC	5 cut(s)	78, 332, 356, 403, 942
Lsp1109I	GCAGC	2 cut(s)	879, 1011
LweI	GCATC	3 cut(s)	399, 493, 558
MaeI	CTAG	2 cut(s)	84, 660
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	7 cut(s)	48, 817, 859, 880, 949, 991, 1012
MalI	GATC	3 cut(s)	114, 198, 225
MboI	GATC	3 cut(s)	112, 196, 223
MboII	GAAGA	5 cut(s)	177, 249, 449, 666, 792
MhlI	GDGCHC	4 cut(s)	83, 157, 815, 947
MluCI	AATT	5 cut(s)	92, 291, 471, 724, 735
MluI	ACGCGT	1 cut(s)	169
Mly113I	GGCGCC	1 cut(s)	350
MlyI	GAGTC	2 cut(s)	96, 251
MmeI	TCCRAC	2 cut(s)	830, 962
MnlI	CCTC	9 cut(s)	35, 40, 68, 185, 330, 432, 505, 656, 758
MroXI	GAANNNNTTC	1 cut(s)	911
MseI	TTAA	3 cut(s)	464, 684, 917
MslI	CAYNNNNRTG	1 cut(s)	642
MspR9I	CCNGG	4 cut(s)	273, 288, 297, 354
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	4 cut(s)	273, 288, 297, 354
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	4 cut(s)	341, 356, 562, 622
NarI	GGCGCC	1 cut(s)	350
NdeII	GATC	3 cut(s)	112, 196, 223
NlaIII	CATG	6 cut(s)	68, 181, 344, 548, 629, 647
NlaIV	GGNNCC	3 cut(s)	351, 358, 516
NmuCI	GTSAC	6 cut(s)	817, 859, 880, 949, 991, 1012
NspI	RCATGY	2 cut(s)	344, 647
PaeI	GCATGC	1 cut(s)	647
PagI	TCATGA	2 cut(s)	64, 177
PaqCI	CACCTGC	3 cut(s)	171, 274, 648
PciSI	GCTCTTC	1 cut(s)	649
PcsI	WCGNNNNNNNCGW	3 cut(s)	112, 201, 568
PctI	GAATGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	911
PfeI	GAWTC	9 cut(s)	215, 584, 629, 832, 853, 874, 964, 985, 1006
PflMI	CCANNNNNTGG	1 cut(s)	329
PfoI	TCCNGGA	1 cut(s)	286
PkrI	GCNGC	3 cut(s)	11, 869, 1001
PleI	GAGTC	2 cut(s)	95, 250
PluTI	GGCGCC	1 cut(s)	353
PpsI	GAGTC	2 cut(s)	95, 250
Psp124BI	GAGCTC	3 cut(s)	83, 815, 947
Psp6I	CCWGG	4 cut(s)	271, 286, 295, 352
PspEI	GGTNACC	3 cut(s)	48, 859, 991
PspGI	CCWGG	4 cut(s)	271, 286, 295, 352
PspN4I	GGNNCC	3 cut(s)	351, 358, 516
PspPI	GGNCC	2 cut(s)	299, 451
PstI	CTGCAG	1 cut(s)	37
PstNI	CAGNNNCTG	3 cut(s)	587, 821, 953
RseI	CAYNNNNRTG	1 cut(s)	642
SacI	GAGCTC	3 cut(s)	83, 815, 947
SapI	GCTCTTC	1 cut(s)	649
SaqAI	TTAA	3 cut(s)	464, 684, 917
SatI	GCNGC	3 cut(s)	10, 868, 1000
Sau3AI	GATC	3 cut(s)	112, 196, 223
Sau96I	GGNCC	2 cut(s)	299, 451
SchI	GAGTC	2 cut(s)	96, 251
ScrFI	CCNGG	4 cut(s)	273, 288, 297, 354
SduI	GDGCHC	4 cut(s)	83, 157, 815, 947
SfaNI	GCATC	3 cut(s)	399, 493, 558
SfcI	CTRYAG	2 cut(s)	33, 382
SfoI	GGCGCC	1 cut(s)	351
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	642
SphI	GCATGC	1 cut(s)	647
Sse9I	AATT	5 cut(s)	92, 291, 471, 724, 735
SsiI	CCGC	3 cut(s)	9, 261, 506
SspDI	GGCGCC	1 cut(s)	349
SspMI	CTAG	2 cut(s)	84, 660
SstI	GAGCTC	3 cut(s)	83, 815, 947
StyD4I	CCNGG	4 cut(s)	271, 286, 295, 352
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	2 cut(s)	90, 634
TasI	AATT	5 cut(s)	92, 291, 471, 724, 735
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	9 cut(s)	215, 584, 629, 832, 853, 874, 964, 985, 1006
Tru1I	TTAA	3 cut(s)	464, 684, 917
Tru9I	TTAA	3 cut(s)	464, 684, 917
TscAI	CASTG	4 cut(s)	351, 654, 826, 958
TseFI	GTSAC	6 cut(s)	817, 859, 880, 949, 991, 1012
TseI	GCWGC	2 cut(s)	867, 999
Tsp45I	GTSAC	6 cut(s)	817, 859, 880, 949, 991, 1012
TspDTI	ATGAA	2 cut(s)	642, 720
TspGWI	ACGGA	1 cut(s)	8
TspRI	CASTG	4 cut(s)	351, 654, 826, 958
Van91I	CCANNNNNTGG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	3 cut(s)	92, 291, 471
XbaI	TCTAGA	1 cut(s)	83
XceI	RCATGY	2 cut(s)	344, 647
XmnI	GAANNNNTTC	1 cut(s)	911
XspI	CTAG	2 cut(s)	84, 660
ZraI	GACGTC	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.