Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008331

Physical Location & Seq

Genomic Coordinates Forward (+)

82912427 .. 82918610

Gene Structure 6184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00060650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGACTTCTTCTGTTCACGATCATTCCGATAGTAGTGAATCTGATGATCAGCAAAAGCATTCAGGGTCTCAGATGATTTCTTCCTCACCTGCACCTGGAATGTCTCATCCTGGAATTCCAGGCCCTATGCAGTATGTACCCCCTCCACAGATTGGAGCAGGACATGCAGTGGCACCAGGAGCCTACCCATATCCGGACCCTTACTACAGAAGCATCTTTGCTCCTTATGACACACAACCATATCCTCCACAACCCTATGGGGGGCAACCAACGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCAGGAGTTCCATTGCCAACAGATGCAGTTGAGGAACCTGTGTTTGTAAATGCAAAACAATATCATGGCATCTTGCGACGTCGGCAGTCTCGTGCTAAAGCAGAATCTGAAAACAAAGCTCTAAAATCTCGGAAGCCTTACTTGCATGAATCTCGACACCTGCATGCACTGAGAAGAGCTAGAGGATGTGGGGGTCGGTTTCTTAATGCAAAGAAAGATGAGAATGAACAGAGCGAAGGAGACAATTCACAGGCAATTATCAACTTGAACTCTGATAAAAGTGAGCGTTCTTCCTCGGATAGAACATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

204

Amino Acids

22.38

Weight (kDa)

7.91

Isoelectric Point (pI)

74.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	113 - 168	7e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30500 AT1G30500
fragaria_vesca	FvH4_3g10080 FvH4_3g10080
malus_domestica	MD05G1273300.v1.1 MD10G1253300.v1.1
prunus_persica	Prupe.4G090200_v2.0.a1 Prupe.4G090200_v2.0.a1
pyrus_communis	pycom05g25500 pycom10g20900
rosa_chinensis	RchiOBHm_Chr5g0015971
rosa_laevigata	RLG00000032233
rosa_multiflora	Rmu_sc0000299.1_g000027 Rmu_sc0001878.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060650
rosa_rugosa	Rorug05G0030600 Rorug05G0030700 Rorug05G0030700
rosa_samantha	Rh5AG124000 Rh5BG122900 Rh5CG134300 Rh5DG122300
rosa_wichuraiana	Rw5G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	97, 471
AatII	GACGTC	1 cut(s)	385
Acc36I	ACCTGC	2 cut(s)	97, 471
AccB1I	GGYRCC	1 cut(s)	172
AccB7I	CCANNNNNTGG	1 cut(s)	152
AccIII	TCCGGA	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	114, 294
AcuI	CTGAAG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	5 cut(s)	95, 152, 193, 260, 261
AgsI	TTSAA	1 cut(s)	571
AjnI	CCWGG	4 cut(s)	94, 109, 118, 175
AluBI	AGCT	2 cut(s)	422, 482
AluI	AGCT	2 cut(s)	422, 482
Alw26I	GTCTC	4 cut(s)	72, 108, 396, 537
AlwNI	CAGNNNCTG	1 cut(s)	410
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	2 cut(s)	114, 294
AspS9I	GGNCC	3 cut(s)	122, 196, 274
AsuHPI	GGTGA	1 cut(s)	78
AvaII	GGWCC	2 cut(s)	196, 274
BanI	GGYRCC	1 cut(s)	172
BauI	CACGAG	1 cut(s)	393
BccI	CCATC	1 cut(s)	285
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	4 cut(s)	96, 111, 120, 177
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	4 cut(s)	72, 108, 396, 537
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	205
BfuAI	ACCTGC	2 cut(s)	97, 471
Bme1390I	CCNGG	4 cut(s)	96, 111, 120, 177
Bme18I	GGWCC	2 cut(s)	196, 274
BmgT120I	GGNCC	3 cut(s)	122, 196, 274
BmiI	GGNNCC	4 cut(s)	174, 181, 198, 339
BmrFI	CCNGG	4 cut(s)	96, 111, 120, 177
BmsI	GCATC	3 cut(s)	222, 316, 381
BsaHI	GRCGYC	1 cut(s)	382
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	597
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 152, 193, 260, 261
Bse3DI	GCAATG	1 cut(s)	314
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	4 cut(s)	96, 111, 120, 177
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	3 cut(s)	106, 494, 608
BseLI	CCNNNNNNNGG	5 cut(s)	95, 152, 193, 260, 261
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	2 cut(s)	83, 464
BsgI	GTGCAG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	194
BslI	CCNNNNNNNGG	5 cut(s)	95, 152, 193, 260, 261
BsmAI	GTCTC	4 cut(s)	72, 108, 396, 537
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	72
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	19, 46
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	2 cut(s)	82, 465
BspEI	TCCGGA	1 cut(s)	193
BspLI	GGNNCC	4 cut(s)	174, 181, 198, 339
BspMI	ACCTGC	2 cut(s)	97, 471
BspQI	GCTCTTC	1 cut(s)	472
BspT107I	GGYRCC	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	2 cut(s)	19, 46
BssNI	GRCGYC	1 cut(s)	382
BssSI	CACGAG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	393
Bst2UI	CCWGG	4 cut(s)	96, 111, 120, 177
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	472
BstACI	GRCGYC	1 cut(s)	382
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	303, 468
BstDEI	CTNAG	2 cut(s)	69, 473
BstF5I	GGATG	3 cut(s)	106, 494, 608
BstKTI	GATC	2 cut(s)	22, 49
BstMAI	GTCTC	4 cut(s)	72, 108, 396, 537
BstMBI	GATC	2 cut(s)	19, 46
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 179, 385, 445
BstNI	CCWGG	4 cut(s)	96, 111, 120, 177
BstNSI	RCATGY	2 cut(s)	167, 470
BstSCI	CCNGG	4 cut(s)	94, 109, 118, 175
BstSFI	CTRYAG	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	106, 494, 608
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 470
BveI	ACCTGC	2 cut(s)	97, 471
Cac8I	GCNNGC	2 cut(s)	303, 468
CaiI	CAGNNNCTG	1 cut(s)	410
Cfr13I	GGNCC	3 cut(s)	122, 196, 274
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	4 cut(s)	164, 368, 449, 467
CviJI	RGCY	5 cut(s)	123, 182, 422, 439, 482
CviKI_1	RGCY	5 cut(s)	123, 182, 422, 439, 482
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	2 cut(s)	69, 473
DpnI	GATC	2 cut(s)	21, 48
DpnII	GATC	2 cut(s)	19, 46
Eam1104I	CTCTTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	472
Eco31I	GGTCTC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	196, 274
Eco57I	CTGAAG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRI	GAATTC	2 cut(s)	114, 294
EcoRII	CCWGG	4 cut(s)	94, 109, 118, 175
FaeI	CATG	4 cut(s)	167, 371, 452, 470
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	4 cut(s)	163, 367, 448, 466
FbaI	TGATCA	1 cut(s)	46
FokI	GGATG	3 cut(s)	93, 501, 595
FspBI	CTAG	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	4 cut(s)	167, 371, 452, 470
HinfI	GANTC	3 cut(s)	38, 407, 452
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	7 cut(s)	28, 43, 72, 412, 435, 577, 601
Hpy188III	TCNNGA	3 cut(s)	17, 194, 456
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	2 cut(s)	384, 387
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	9 cut(s)	92, 130, 167, 329, 356, 448, 466, 470, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 179, 385, 445
HpyF3I	CTNAG	2 cut(s)	69, 473
HpySE526I	ACGT	1 cut(s)	382
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	4 cut(s)	167, 371, 452, 470
Kpn2I	TCCGGA	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	19, 46
LguI	GCTCTTC	1 cut(s)	472
LmnI	GCTCC	3 cut(s)	155, 179, 226
LweI	GCATC	3 cut(s)	222, 316, 381
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	1 cut(s)	382
MalI	GATC	2 cut(s)	21, 48
MboI	GATC	2 cut(s)	19, 46
MboII	GAAGA	4 cut(s)	72, 272, 489, 585
MluCI	AATT	4 cut(s)	114, 294, 547, 558
MnlI	CCTC	6 cut(s)	94, 153, 255, 328, 479, 607
MroI	TCCGGA	1 cut(s)	193
MseI	TTAA	2 cut(s)	287, 507
MslI	CAYNNNNRTG	1 cut(s)	465
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	4 cut(s)	96, 111, 120, 177
Mva1269I	GAATGC	1 cut(s)	58
MvaI	CCWGG	4 cut(s)	96, 111, 120, 177
MwoI	GCNNNNNNNGC	4 cut(s)	164, 179, 385, 445
NdeII	GATC	2 cut(s)	19, 46
NlaIII	CATG	4 cut(s)	167, 371, 452, 470
NlaIV	GGNNCC	4 cut(s)	174, 181, 198, 339
NspI	RCATGY	2 cut(s)	167, 470
PaeI	GCATGC	1 cut(s)	470
PaqCI	CACCTGC	2 cut(s)	97, 471
PciSI	GCTCTTC	1 cut(s)	472
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 391
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	3 cut(s)	38, 407, 452
PflMI	CCANNNNNTGG	1 cut(s)	152
PfoI	TCCNGGA	1 cut(s)	109
Psp6I	CCWGG	4 cut(s)	94, 109, 118, 175
PspGI	CCWGG	4 cut(s)	94, 109, 118, 175
PspN4I	GGNNCC	4 cut(s)	174, 181, 198, 339
PspPI	GGNCC	3 cut(s)	122, 196, 274
PstNI	CAGNNNCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	465
SapI	GCTCTTC	1 cut(s)	472
SaqAI	TTAA	2 cut(s)	287, 507
Sau3AI	GATC	2 cut(s)	19, 46
Sau96I	GGNCC	3 cut(s)	122, 196, 274
ScrFI	CCNGG	4 cut(s)	96, 111, 120, 177
SetI	ASST	7 cut(s)	91, 97, 343, 385, 424, 465, 484
SfaNI	GCATC	3 cut(s)	222, 316, 381
SfcI	CTRYAG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	196, 274
SmiMI	CAYNNNNRTG	1 cut(s)	465
SphI	GCATGC	1 cut(s)	470
Sse9I	AATT	4 cut(s)	114, 294, 547, 558
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	4 cut(s)	94, 109, 118, 175
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	1 cut(s)	457
TasI	AATT	4 cut(s)	114, 294, 547, 558
TfiI	GAWTC	3 cut(s)	38, 407, 452
Tru1I	TTAA	2 cut(s)	287, 507
Tru9I	TTAA	2 cut(s)	287, 507
TscAI	CASTG	2 cut(s)	174, 477
TspDTI	ATGAA	2 cut(s)	465, 543
TspRI	CASTG	2 cut(s)	174, 477
Van91I	CCANNNNNTGG	1 cut(s)	152
VpaK11BI	GGWCC	2 cut(s)	196, 274
XapI	RAATTY	2 cut(s)	114, 294
XceI	RCATGY	2 cut(s)	167, 470
XspI	CTAG	1 cut(s)	483
ZraI	GACGTC	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.