Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008331

Physical Location & Seq

Genomic Coordinates Reverse (-)

12326663 .. 12335264

Gene Structure 8602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032233

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGACGGATCTCGAAGCATTTGATATCCCAATCAACTATCAGATGGTGTGCAAGACATGGAACAGAGTCTTCTGCAACTACCCTGCTCTATGGCACACCATCGACATGCGTGAGGAGTTATCCAGCTACCACAAAGATTGGAAGGACGTGGAGAAGATGTGCCGCAACGCCATTGATCGCAGCTCTGGTCAATTGGTCGATATCTCATGCGTATGTGGTAGTAACGACCTCCTTAAATGCAAGAGTACTGTTGGAGATGGACAAGATGATGACTACGCAAATGCTATAGCAAGAACCAGCAAAAAAGAAAGAATTTTGCCAATTTTAGTAGCAACAACACGAAAGGATCGTCAGAAACAGGAGAAAGAGCCACATCGTTTTGGGGTTCTCCACCTGCAACACGTCCTCATGACTTCTTCTGTTCACGATCATTCCGATAGCAGTGAATCTGATGATCAGCAAAAGCATTCAGAGTCTCCGATGATTTCTTCCTCACCTGCACCTGGAATGTCTCATTCTGGAATTCCAGGCCCTATGCAGTATGTAGCTCCTCCACAGATTGGAGCAGGACATGCAGTGGCACCAGGAGCCTACCCATATCCGGACCCTTACTACAGAAGCATCTTTGCTCCTTATGACACACAACCATATCCTCCACAACCCTATGGGGGGCAACCAACGGTCCATCTTCAGTTGATGGGAATTCAGCAAGCAGGAGTTCCATTGCCAACAGATGCAGTTGAGGAACCTGTGTTTGTAAATGCAAAACAATATCATGGCATCTTGCGACGTCGGCAGTCCCGTGCTAAAGCTGAATCTGAAAACAAAGCTCTAAAATCTCGGAAGCCTTACTTGCATGAATCTCGACACCTGCATGCACTGAGAAGAGCTAGAGGATGTGGGGGTCGATTTCTTAATGCAAAGAAAGATGAGAATGAACAGAGTGAAGGAGACAATTCACAGGCAATTATCAACTTGAACTCTGATAAAAGTGAGCGTTCTTCCTCGGATAGAACATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

341

Amino Acids

38.16

Weight (kDa)

7.24

Isoelectric Point (pI)

63.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	249 - 304	1.7e-26	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30500 AT1G30500
fragaria_vesca	FvH4_3g10080 FvH4_3g10080
malus_domestica	MD05G1273300.v1.1 MD10G1253300.v1.1
prunus_persica	Prupe.4G090200_v2.0.a1 Prupe.4G090200_v2.0.a1
pyrus_communis	pycom05g25500 pycom10g20900
rosa_chinensis	RchiOBHm_Chr5g0015971
rosa_laevigata	RLG00000032233
rosa_multiflora	Rmu_sc0000299.1_g000027 Rmu_sc0001878.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060650
rosa_rugosa	Rorug05G0030600 Rorug05G0030700 Rorug05G0030700
rosa_samantha	Rh5AG124000 Rh5BG122900 Rh5CG134300 Rh5DG122300
rosa_wichuraiana	Rw5G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	402, 505, 879
AatII	GACGTC	1 cut(s)	793
Acc36I	ACCTGC	3 cut(s)	402, 505, 879
AccB1I	GGYRCC	1 cut(s)	580
AccB7I	CCANNNNNTGG	1 cut(s)	560
AccIII	TCCGGA	1 cut(s)	601
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	2 cut(s)	15, 354
AcsI	RAATTY	3 cut(s)	312, 522, 702
AcuI	CTGAAG	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	790
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	5 cut(s)	503, 560, 601, 668, 669
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	979
AjiI	CACGTC	2 cut(s)	148, 403
AjnI	CCWGG	3 cut(s)	502, 526, 583
AluBI	AGCT	6 cut(s)	126, 183, 548, 812, 830, 890
AluI	AGCT	6 cut(s)	126, 183, 548, 812, 830, 890
Alw26I	GTCTC	3 cut(s)	480, 516, 945
AlwI	GGATC	2 cut(s)	15, 354
Aor13HI	TCCGGA	1 cut(s)	601
AoxI	GGCC	1 cut(s)	529
ApeKI	GCWGC	1 cut(s)	180
ApoI	RAATTY	3 cut(s)	312, 522, 702
ArsI	GACNNNNNNTTYG	2 cut(s)	334, 366
AspS9I	GGNCC	3 cut(s)	530, 604, 682
AsuHPI	GGTGA	1 cut(s)	486
AvaII	GGWCC	2 cut(s)	604, 682
BanI	GGYRCC	1 cut(s)	580
BbsI	GAAGAC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	5 cut(s)	37, 107, 251, 691, 693
BcgI	CGANNNNNNTGC	2 cut(s)	845, 879
BciT130I	CCWGG	3 cut(s)	504, 528, 585
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	3 cut(s)	480, 516, 945
BfaI	CTAG	1 cut(s)	891
BfmI	CTRYAG	2 cut(s)	285, 613
BfuAI	ACCTGC	3 cut(s)	402, 505, 879
BisI	GCNGC	2 cut(s)	163, 181
BlsI	GCNGC	2 cut(s)	164, 182
BmcAI	AGTACT	1 cut(s)	247
Bme1390I	CCNGG	3 cut(s)	504, 528, 585
Bme18I	GGWCC	2 cut(s)	604, 682
BmgBI	CACGTC	2 cut(s)	148, 403
BmgT120I	GGNCC	3 cut(s)	530, 604, 682
BmiI	GGNNCC	4 cut(s)	582, 589, 606, 747
BmrFI	CCNGG	3 cut(s)	504, 528, 585
BmsI	GCATC	3 cut(s)	630, 724, 789
BpiI	GAAGAC	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	790
BsaJI	CCNNGG	1 cut(s)	1005
BsaWI	WCCGGW	1 cut(s)	601
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	5 cut(s)	503, 560, 601, 668, 669
Bse3DI	GCAATG	1 cut(s)	722
BseAI	TCCGGA	1 cut(s)	601
BseBI	CCWGG	3 cut(s)	504, 528, 585
BseDI	CCNNGG	1 cut(s)	1005
BseGI	GGATG	2 cut(s)	902, 1016
BseLI	CCNNNNNNNGG	5 cut(s)	503, 560, 601, 668, 669
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	1 cut(s)	872
BseRI	GAGGAG	2 cut(s)	128, 540
BseXI	GCAGC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	1 cut(s)	531
BshNI	GGYRCC	1 cut(s)	580
BsiSI	CCGG	1 cut(s)	602
BslFI	GGGAC	1 cut(s)	784
BslI	CCNNNNNNNGG	5 cut(s)	503, 560, 601, 668, 669
BsmAI	GTCTC	3 cut(s)	480, 516, 945
BsmFI	GGGAC	1 cut(s)	784
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	531
Bsp13I	TCCGGA	1 cut(s)	601
Bsp143I	GATC	5 cut(s)	7, 175, 346, 427, 454
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	531
BspCNI	CTCAG	1 cut(s)	873
BspEI	TCCGGA	1 cut(s)	601
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	4 cut(s)	582, 589, 606, 747
BspMI	ACCTGC	3 cut(s)	402, 505, 879
BspPI	GGATC	2 cut(s)	15, 354
BspQI	GCTCTTC	1 cut(s)	880
BspT107I	GGYRCC	1 cut(s)	580
BsrDI	GCAATG	1 cut(s)	722
BssECI	CCNNGG	1 cut(s)	1005
BssMI	GATC	5 cut(s)	7, 175, 346, 427, 454
BssNI	GRCGYC	1 cut(s)	790
Bst2UI	CCWGG	3 cut(s)	504, 528, 585
Bst4CI	ACNGT	2 cut(s)	250, 682
Bst6I	CTCTTC	1 cut(s)	880
BstACI	GRCGYC	1 cut(s)	790
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	711, 876
BstDEI	CTNAG	1 cut(s)	881
BstF5I	GGATG	2 cut(s)	902, 1016
BstKTI	GATC	5 cut(s)	10, 178, 349, 430, 457
BstMAI	GTCTC	3 cut(s)	480, 516, 945
BstMBI	GATC	5 cut(s)	7, 175, 346, 427, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	572, 587, 793, 853
BstNI	CCWGG	3 cut(s)	504, 528, 585
BstNSI	RCATGY	3 cut(s)	109, 575, 878
BstSCI	CCNGG	3 cut(s)	502, 526, 583
BstSFI	CTRYAG	2 cut(s)	285, 613
BstV1I	GCAGC	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	531
BtrI	CACGTC	2 cut(s)	148, 403
BtsCI	GGATG	2 cut(s)	902, 1016
BtsI	GCAGTG	2 cut(s)	448, 582
BtsIMutI	CAGTG	3 cut(s)	448, 582, 878
BveI	ACCTGC	3 cut(s)	402, 505, 879
Cac8I	GCNNGC	2 cut(s)	711, 876
CciI	TCATGA	1 cut(s)	408
Cfr13I	GGNCC	3 cut(s)	530, 604, 682
Csp6I	GTAC	1 cut(s)	246
CspCI	CAANNNNNGTGG	2 cut(s)	119, 154
CviAII	CATG	8 cut(s)	57, 106, 207, 409, 572, 776, 857, 875
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	881
DpnI	GATC	5 cut(s)	9, 177, 348, 429, 456
DpnII	GATC	5 cut(s)	7, 175, 346, 427, 454
Eam1104I	CTCTTC	1 cut(s)	880
EarI	CTCTTC	1 cut(s)	880
Eco32I	GATATC	2 cut(s)	25, 202
Eco47I	GGWCC	2 cut(s)	604, 682
Eco57I	CTGAAG	1 cut(s)	674
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRI	GAATTC	2 cut(s)	522, 702
EcoRII	CCWGG	3 cut(s)	502, 526, 583
EcoRV	GATATC	2 cut(s)	25, 202
FaeI	CATG	8 cut(s)	60, 109, 210, 412, 575, 779, 860, 878
FalI	AAGNNNNNCTT	2 cut(s)	836, 868
FaqI	GGGAC	1 cut(s)	784
FatI	CATG	8 cut(s)	56, 105, 206, 408, 571, 775, 856, 874
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	163, 181
FokI	GGATG	2 cut(s)	909, 1003
Fsp4HI	GCNGC	2 cut(s)	163, 181
FspBI	CTAG	1 cut(s)	891
GluI	GCNGC	2 cut(s)	163, 181
HaeIII	GGCC	1 cut(s)	531
HapII	CCGG	1 cut(s)	602
Hin1I	GRCGYC	1 cut(s)	790
Hin1II	CATG	8 cut(s)	60, 109, 210, 412, 575, 779, 860, 878
HinfI	GANTC	5 cut(s)	66, 446, 473, 815, 860
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	1 cut(s)	486
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188III	TCNNGA	6 cut(s)	11, 409, 425, 519, 602, 864
Hpy8I	GTNNAC	1 cut(s)	424
Hpy99I	CGWCG	2 cut(s)	792, 795
HpyAV	CCTTC	2 cut(s)	136, 941
HpyCH4III	ACNGT	2 cut(s)	250, 682
HpyCH4IV	ACGT	3 cut(s)	147, 402, 790
HpyF10VI	GCNNNNNNNGC	4 cut(s)	572, 587, 793, 853
HpyF3I	CTNAG	1 cut(s)	881
HpySE526I	ACGT	3 cut(s)	147, 402, 790
Hsp92I	GRCGYC	1 cut(s)	790
Hsp92II	CATG	8 cut(s)	60, 109, 210, 412, 575, 779, 860, 878
Kpn2I	TCCGGA	1 cut(s)	601
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	5 cut(s)	7, 175, 346, 427, 454
LguI	GCTCTTC	1 cut(s)	880
LmnI	GCTCC	4 cut(s)	553, 563, 587, 634
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	3 cut(s)	630, 724, 789
MaeI	CTAG	1 cut(s)	891
MaeII	ACGT	3 cut(s)	147, 402, 790
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	5 cut(s)	9, 177, 348, 429, 456
MboI	GATC	5 cut(s)	7, 175, 346, 427, 454
MboII	GAAGA	7 cut(s)	61, 166, 408, 480, 680, 897, 993
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	7 cut(s)	191, 312, 321, 522, 702, 955, 966
MlyI	GAGTC	2 cut(s)	75, 482
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	9 cut(s)	106, 239, 416, 502, 561, 663, 736, 887, 1015
MroI	TCCGGA	1 cut(s)	601
MseI	TTAA	2 cut(s)	234, 915
MslI	CAYNNNNRTG	3 cut(s)	104, 211, 873
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	3 cut(s)	504, 528, 585
MunI	CAATTG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	3 cut(s)	504, 528, 585
MwoI	GCNNNNNNNGC	4 cut(s)	572, 587, 793, 853
NdeII	GATC	5 cut(s)	7, 175, 346, 427, 454
NlaIII	CATG	8 cut(s)	60, 109, 210, 412, 575, 779, 860, 878
NlaIV	GGNNCC	4 cut(s)	582, 589, 606, 747
NspI	RCATGY	3 cut(s)	109, 575, 878
PaeI	GCATGC	1 cut(s)	878
PagI	TCATGA	1 cut(s)	408
PaqCI	CACCTGC	3 cut(s)	402, 505, 879
PciSI	GCTCTTC	1 cut(s)	880
PcsI	WCGNNNNNNNCGW	3 cut(s)	346, 432, 799
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	3 cut(s)	446, 815, 860
PflMI	CCANNNNNTGG	1 cut(s)	560
PkrI	GCNGC	2 cut(s)	164, 182
PleI	GAGTC	2 cut(s)	74, 481
PpsI	GAGTC	2 cut(s)	74, 481
Psp6I	CCWGG	3 cut(s)	502, 526, 583
PspGI	CCWGG	3 cut(s)	502, 526, 583
PspN4I	GGNNCC	4 cut(s)	582, 589, 606, 747
PspPI	GGNCC	3 cut(s)	530, 604, 682
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
RseI	CAYNNNNRTG	3 cut(s)	104, 211, 873
SapI	GCTCTTC	1 cut(s)	880
SaqAI	TTAA	2 cut(s)	234, 915
SatI	GCNGC	2 cut(s)	163, 181
Sau3AI	GATC	5 cut(s)	7, 175, 346, 427, 454
Sau96I	GGNCC	3 cut(s)	530, 604, 682
ScaI	AGTACT	1 cut(s)	247
SchI	GAGTC	2 cut(s)	75, 482
ScrFI	CCNGG	3 cut(s)	504, 528, 585
SfaNI	GCATC	3 cut(s)	630, 724, 789
SfcI	CTRYAG	2 cut(s)	285, 613
SinI	GGWCC	2 cut(s)	604, 682
SmiMI	CAYNNNNRTG	3 cut(s)	104, 211, 873
SphI	GCATGC	1 cut(s)	878
Sse9I	AATT	7 cut(s)	191, 312, 321, 522, 702, 955, 966
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	1 cut(s)	891
StyD4I	CCNGG	3 cut(s)	502, 526, 583
TaaI	ACNGT	2 cut(s)	250, 682
TaiI	ACGT	3 cut(s)	150, 405, 793
TaqI	TCGA	5 cut(s)	12, 102, 198, 865, 907
TasI	AATT	7 cut(s)	191, 312, 321, 522, 702, 955, 966
TatI	WGTACW	1 cut(s)	245
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	3 cut(s)	446, 815, 860
Tru1I	TTAA	2 cut(s)	234, 915
Tru9I	TTAA	2 cut(s)	234, 915
TscAI	CASTG	3 cut(s)	448, 582, 885
TseI	GCWGC	1 cut(s)	180
TspDTI	ATGAA	2 cut(s)	873, 951
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	3 cut(s)	448, 582, 885
Van91I	CCANNNNNTGG	1 cut(s)	560
VpaK11BI	GGWCC	2 cut(s)	604, 682
XapI	RAATTY	3 cut(s)	312, 522, 702
XceI	RCATGY	3 cut(s)	109, 575, 878
XspI	CTAG	1 cut(s)	891
ZraI	GACGTC	1 cut(s)	791
ZrmI	AGTACT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.