Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008331

Physical Location & Seq

Genomic Coordinates Reverse (-)

1951894 .. 1953945

Gene Structure 2052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0030600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2052 bp

ATGCAAGCTAGCCCCCTTGGCCTTAATGCCATTACCGAGTTTATAGAGGAATATGCAGCTAATTCTGGCCAGGTTGTGAATAAAAACAAGTCATTGTTGTTCTTAGGGGCCTCAGCTCGTCCTCGGCAGAGTATCATTATTCAATCATTGGGCATACATTTAGGAACTCTTCCTTTCAGCTATCTTGGAGTCCCCATCTTTCAAGGTTGTCCTACTAATGCCTTTTTACGACCGATAGCGGATAAGGTACGGTGTAAACTCAGCTCCTGGAAGGGTAAGTTGTTATCTCAAGCTGCTAGATTACAACTTATTGATTCTGTAATACAAAGCTTACTCATCTATAGCTTTCATATCTATGCCTGGCCCCGTTCTCTCTTGAAAGTGGTTCAAAGGTGGATTTGTAACTTCTTTTGGAATGGGGACCCATTGAAAGATGGAGGAGCTTTGGTTTCTTGGGATCAAGTATGTCAACGTAAGGACAGGGGTGGTTTGAACCTAAAGAACCTTTTTGTGTTAAACCAAGCCTTGCTTCTTAAACGTGGGTGGGAGGTTGTTTCTAACGTTTCACCTTCTGCGAAGTTTCTTCATGCTCGTTTTCTTTCGAATGGGTTACAACCTTGTACCTACTACAAAAAATCCTCAGTATGGCTAGGTCTAAAAAGAGTTTGGCGAGTTCTACTCTCCAAGCTTCGTTGGATAATTGGAGATGGCAATTCGATTAGGTTGTGGAAAGATAATTGGATGGGTGACATCTTAGGTGAGGCTTTTCATTTTGATTCCCAAACTTTGGGGCAACTTGATAATAAGATCAGTGACTTCATTGTGCATGGAAGATGGGATTTGCCAGATATTTTCCTCCAGGCCTTTCCTGATGTTGCAGCTGCACTCACCTCTTATACCCTTCCTTTCGAGCCTATGAGGGACCAGATTGTTTGGTCCGATACCTCATCGGGTGTTCCAACGGCTAAGGATGCATATGGCACCCTGTCCCATTCGCTTCCCAAGTTACATTGGGGTTCGTTGATTTGGCATAAGGCAATACAACCACGGAAGAGCATTTGCACCTGGAAGATTCTTCACAGGAGGATTCTTACTGATGAGCGGCTACAAAGGAGGGGTGTGGCCCTTCCATCTAAATGCAGCTTTTGTAGGTCGGCTGGGGAATCATGGGAGCACCTTTTTTGGAGCTGCATGGTTTCGAGGGTGATTTGGAGGTGGTGTTTTAGCATGTTCAAGTTCTCTCCCATCCAACGACACTCTATACATCAACTCCTTTCGTCATCCTTCATCTCTTCTCTCTCTCCCTCAGTGAAATTGCTTTGGCGCATCACTCTTTGCAATCTTCTTTGGTGCTTTTGGTCAGAAAGGAATTGGTTGAGACATGAGGGTGGCACTTTCAACCTCATCAGATTCATGCGCTTTTTCTTATTGTCCTTGAAAGAGTCAGCAGGTATGGCTTTTGTCCATTCTCCCCCAACCTCAACTTATCCTATTTTTAATATCTTATTACTTTCATCTTTGAGAGCAACAGCTCCTCGTTTCATAAAAGTGACCTGGACGCCTCTCATCCCCCCTTGGGTCAAGATTAACACCGACGGTTCTTTCCGAGATGCGGACAATGCTGGCTATGGTGGTATCGTTCGTGATGCTGAGGGTGCTTTTGTCCATGCTTTTGCTTCTAGGGTAAGAGTTCCTAGTGCCCTTGATGCTGAGGTTCTTGCTTTCCTGGAAGCAATTGGGGTGGCTAGGTCACGTAATTGGCGCCATTTGTGGATTGAGACGGACTCAGCGGTAGTGGTCAGATATTTTGCGTCCCCATCTCTTGTCCCTTGGAGGCTGCGCATTGAGTGGCTAAACGGTATGGTTTTAGCAAGACAATTGCAATTACGTGTCACTCACATCTTTCGGGAAGGGAATGTTGTGGCAGATGTGCTAGCTAACTATGGTGCATCACATGAAGGTACTCACAGATGGGATTCGTTGCCCCAGTTCTTGTCTTCTGCCTTTGGTCGAGACTTTGTTTCATGGCCGACCTATAGATTTGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

683

Amino Acids

77.98

Weight (kDa)

9.92

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	322 - 404	6.1e-19	zinc-binding in reverse transcriptase
RVT_3	PF13456	530 - 648	1.7e-16	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30500 AT1G30500
fragaria_vesca	FvH4_3g10080 FvH4_3g10080
malus_domestica	MD05G1273300.v1.1 MD10G1253300.v1.1
prunus_persica	Prupe.4G090200_v2.0.a1 Prupe.4G090200_v2.0.a1
pyrus_communis	pycom05g25500 pycom10g20900
rosa_chinensis	RchiOBHm_Chr5g0015971
rosa_laevigata	RLG00000032233
rosa_multiflora	Rmu_sc0000299.1_g000027 Rmu_sc0001878.1_g000008
rosa_roxburghii	Rroxscaffold_1G00060650
rosa_rugosa	Rorug05G0030600 Rorug05G0030700 Rorug05G0030700
rosa_samantha	Rh5AG124000 Rh5BG122900 Rh5CG134300 Rh5DG122300
rosa_wichuraiana	Rw5G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1841
Acc36I	ACCTGC	1 cut(s)	1439
AccB1I	GGYRCC	2 cut(s)	980, 1761
AccB7I	CCANNNNNTGG	1 cut(s)	787
AccBSI	CCGCTC	1 cut(s)	1102
AciI	CCGC	4 cut(s)	239, 1102, 1613, 1790
AclI	AACGTT	1 cut(s)	561
AclWI	GGATC	1 cut(s)	465
AcoI	YGGCCR	2 cut(s)	67, 2027
AcyI	GRCGYC	2 cut(s)	1559, 1762
AfaI	GTAC	3 cut(s)	249, 622, 1963
AfiI	CCNNNNNNNGG	4 cut(s)	645, 787, 1576, 1612
AflIII	ACRYGT	1 cut(s)	1888
AgsI	TTSAA	9 cut(s)	143, 203, 379, 389, 430, 493, 1234, 1399, 1438
AjnI	CCWGG	7 cut(s)	69, 266, 359, 858, 1064, 1553, 1725
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
Alw21I	GWGCWC	1 cut(s)	1176
Alw26I	GTCTC	3 cut(s)	1372, 1772, 2007
AlwI	GGATC	1 cut(s)	465
AlwNI	CAGNNNCTG	1 cut(s)	267
AoxI	GGCC	7 cut(s)	19, 67, 108, 362, 861, 1122, 2027
ApeKI	GCWGC	7 cut(s)	56, 293, 878, 881, 1140, 1188, 1837
AspLEI	GCGC	4 cut(s)	1326, 1419, 1764, 1842
AspS9I	GGNCC	6 cut(s)	108, 363, 421, 922, 936, 1123
AsuHPI	GGTGA	5 cut(s)	558, 758, 770, 880, 1216
AsuII	TTCGAA	1 cut(s)	602
AsuNHI	GCTAGC	2 cut(s)	8, 1933
AvaII	GGWCC	3 cut(s)	421, 922, 936
BaeGI	GKGCMC	1 cut(s)	1702
BalI	TGGCCA	1 cut(s)	69
BanI	GGYRCC	2 cut(s)	980, 1761
BbsI	GAAGAC	1 cut(s)	1989
Bbv12I	GWGCWC	1 cut(s)	1176
BbvCI	CCTCAGC	3 cut(s)	112, 1650, 1710
BbvI	GCAGC	7 cut(s)	68, 280, 868, 890, 1152, 1175, 1824
BccI	CCATC	9 cut(s)	203, 428, 701, 736, 828, 1138, 1253, 1825, 1965
BceAI	ACGGC	1 cut(s)	978
BciT130I	CCWGG	7 cut(s)	71, 268, 361, 860, 1066, 1555, 1727
BcoDI	GTCTC	3 cut(s)	1372, 1772, 2007
BfaI	CTAG	7 cut(s)	9, 297, 650, 1680, 1695, 1746, 1934
BfmI	CTRYAG	2 cut(s)	340, 2035
BfoI	RGCGCY	1 cut(s)	1765
BfuAI	ACCTGC	1 cut(s)	1439
BglI	GCCNNNNNGGC	1 cut(s)	18
BisI	GCNGC	8 cut(s)	57, 294, 879, 882, 1103, 1141, 1189, 1838
BlsI	GCNGC	8 cut(s)	58, 295, 880, 883, 1104, 1142, 1190, 1839
Bme1390I	CCNGG	7 cut(s)	71, 268, 361, 860, 1066, 1555, 1727
Bme18I	GGWCC	3 cut(s)	421, 922, 936
BmgT120I	GGNCC	6 cut(s)	108, 363, 421, 922, 936, 1123
BmiI	GGNNCC	7 cut(s)	109, 365, 422, 423, 923, 982, 1763
BmrFI	CCNGG	7 cut(s)	71, 268, 361, 860, 1066, 1555, 1727
BmrI	ACTGGG	1 cut(s)	1981
BmsI	GCATC	6 cut(s)	961, 1335, 1600, 1636, 1696, 1958
BmtI	GCTAGC	2 cut(s)	12, 1937
BmuI	ACTGGG	1 cut(s)	1981
BpiI	GAAGAC	1 cut(s)	1989
BplI	GAGNNNNNCTC	4 cut(s)	663, 695, 1769, 1801
BpmI	CTGGAG	1 cut(s)	842
Bpu10I	CCTNAGC	4 cut(s)	112, 966, 1650, 1710
Bpu14I	TTCGAA	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	273
BsaAI	YACGTR	2 cut(s)	1754, 1889
BsaHI	GRCGYC	2 cut(s)	1559, 1762
BsaJI	CCNNGG	5 cut(s)	16, 122, 1046, 1574, 1829
BsaXI	ACNNNNNCTCC	6 cut(s)	432, 462, 1204, 1234, 1254, 1284
Bsc4I	CCNNNNNNNGG	4 cut(s)	645, 787, 1576, 1612
Bse1I	ACTGG	1 cut(s)	1987
BseBI	CCWGG	7 cut(s)	71, 268, 361, 860, 1066, 1555, 1727
BseDI	CCNNGG	5 cut(s)	16, 122, 1046, 1574, 1829
BseGI	GGATG	5 cut(s)	747, 976, 1245, 1280, 1566
BseLI	CCNNNNNNNGG	4 cut(s)	645, 787, 1576, 1612
BseMII	CTCAG	7 cut(s)	126, 274, 654, 1320, 1641, 1701, 1800
BseNI	ACTGG	1 cut(s)	1987
BseRI	GAGGAG	2 cut(s)	453, 1524
BseSI	GKGCMC	1 cut(s)	1702
BseXI	GCAGC	7 cut(s)	68, 280, 868, 890, 1152, 1175, 1824
BseYI	CCCAGC	1 cut(s)	1157
BsgI	GTGCAG	1 cut(s)	867
Bsh1285I	CGRYCG	1 cut(s)	233
BshFI	GGCC	7 cut(s)	21, 69, 110, 364, 863, 1124, 2029
BshNI	GGYRCC	2 cut(s)	980, 1761
BsiEI	CGRYCG	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	1176
BslFI	GGGAC	6 cut(s)	176, 434, 935, 973, 1798, 1811
BslI	CCNNNNNNNGG	4 cut(s)	645, 787, 1576, 1612
BsmAI	GTCTC	3 cut(s)	1372, 1772, 2007
BsmBI	CGTCTC	1 cut(s)	1772
BsmFI	GGGAC	6 cut(s)	176, 434, 935, 973, 1798, 1811
BsnI	GGCC	7 cut(s)	21, 69, 110, 364, 863, 1124, 2029
Bsp119I	TTCGAA	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	1176, 1702
Bsp143I	GATC	2 cut(s)	457, 807
BspACI	CCGC	4 cut(s)	239, 1102, 1613, 1790
BspANI	GGCC	7 cut(s)	21, 69, 110, 364, 863, 1124, 2029
BspCNI	CTCAG	7 cut(s)	125, 273, 653, 1319, 1642, 1702, 1799
BspLI	GGNNCC	7 cut(s)	109, 365, 422, 423, 923, 982, 1763
BspMI	ACCTGC	1 cut(s)	1439
BspOI	GCTAGC	2 cut(s)	12, 1937
BspPI	GGATC	1 cut(s)	465
BspQI	GCTCTTC	1 cut(s)	1046
BspT104I	TTCGAA	1 cut(s)	602
BspT107I	GGYRCC	2 cut(s)	980, 1761
BsrBI	CCGCTC	1 cut(s)	1102
BsrI	ACTGG	1 cut(s)	1987
BssECI	CCNNGG	5 cut(s)	16, 122, 1046, 1574, 1829
BssMI	GATC	2 cut(s)	457, 807
BssNI	GRCGYC	2 cut(s)	1559, 1762
BssT1I	CCWWGG	3 cut(s)	16, 1574, 1829
Bst2UI	CCWGG	7 cut(s)	71, 268, 361, 860, 1066, 1555, 1727
Bst4CI	ACNGT	3 cut(s)	252, 1598, 1859
Bst6I	CTCTTC	3 cut(s)	174, 1046, 1297
BstACI	GRCGYC	2 cut(s)	1559, 1762
BstBAI	YACGTR	2 cut(s)	1754, 1889
BstBI	TTCGAA	1 cut(s)	602
BstC8I	GCNNGC	4 cut(s)	6, 10, 1624, 1935
BstDSI	CCRYGG	1 cut(s)	1046
BstF5I	GGATG	5 cut(s)	747, 976, 1245, 1280, 1566
BstH2I	RGCGCY	1 cut(s)	1765
BstHHI	GCGC	4 cut(s)	1326, 1419, 1764, 1842
BstKTI	GATC	2 cut(s)	460, 810
BstMAI	GTCTC	3 cut(s)	1372, 1772, 2007
BstMBI	GATC	2 cut(s)	457, 807
BstMCI	CGRYCG	1 cut(s)	233
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 971, 1454, 1619, 1655, 1706
BstNI	CCWGG	7 cut(s)	71, 268, 361, 860, 1066, 1555, 1727
BstNSI	RCATGY	1 cut(s)	1231
BstSCI	CCNGG	7 cut(s)	69, 266, 359, 858, 1064, 1553, 1725
BstSFI	CTRYAG	2 cut(s)	340, 2035
BstSLI	GKGCMC	1 cut(s)	1702
BstV1I	GCAGC	7 cut(s)	68, 280, 868, 890, 1152, 1175, 1824
BstV2I	GAAGAC	1 cut(s)	1989
BsuRI	GGCC	7 cut(s)	21, 69, 110, 364, 863, 1124, 2029
BtgI	CCRYGG	1 cut(s)	1046
BtsCI	GGATG	5 cut(s)	747, 976, 1245, 1280, 1566
BtsIMutI	CAGTG	2 cut(s)	817, 1314
BveI	ACCTGC	1 cut(s)	1439
Cac8I	GCNNGC	4 cut(s)	6, 10, 1624, 1935
CaiI	CAGNNNCTG	1 cut(s)	267
CfoI	GCGC	4 cut(s)	1326, 1419, 1764, 1842
Cfr13I	GGNCC	6 cut(s)	108, 363, 421, 922, 936, 1123
CseI	GACGC	2 cut(s)	1567, 1800
Csp6I	GTAC	3 cut(s)	248, 621, 1962
CspCI	CAANNNNNGTGG	2 cut(s)	1722, 1757
CviQI	GTAC	3 cut(s)	248, 621, 1962
DinI	GGCGCC	1 cut(s)	1763
DpnI	GATC	2 cut(s)	459, 809
DpnII	GATC	2 cut(s)	457, 807
EaeI	YGGCCR	2 cut(s)	67, 2027
Eam1104I	CTCTTC	3 cut(s)	174, 1046, 1297
EarI	CTCTTC	3 cut(s)	174, 1046, 1297
Eco130I	CCWWGG	3 cut(s)	16, 1574, 1829
Eco147I	AGGCCT	1 cut(s)	863
Eco47I	GGWCC	3 cut(s)	421, 922, 936
EcoO109I	RGGNCCY	2 cut(s)	108, 421
EcoRII	CCWGG	7 cut(s)	69, 266, 359, 858, 1064, 1553, 1725
EcoT14I	CCWWGG	3 cut(s)	16, 1574, 1829
EcoT22I	ATGCAT	1 cut(s)	976
EgeI	GGCGCC	1 cut(s)	1763
EheI	GGCGCC	1 cut(s)	1763
ErhI	CCWWGG	3 cut(s)	16, 1574, 1829
Esp3I	CGTCTC	1 cut(s)	1772
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FaqI	GGGAC	6 cut(s)	176, 434, 935, 973, 1798, 1811
FauNDI	CATATG	1 cut(s)	976
Fnu4HI	GCNGC	8 cut(s)	57, 294, 879, 882, 1103, 1141, 1189, 1838
FokI	GGATG	5 cut(s)	754, 983, 1232, 1267, 1553
Fsp4HI	GCNGC	8 cut(s)	57, 294, 879, 882, 1103, 1141, 1189, 1838
FspBI	CTAG	7 cut(s)	9, 297, 650, 1680, 1695, 1746, 1934
FspI	TGCGCA	1 cut(s)	1841
GlaI	GCGC	4 cut(s)	1325, 1418, 1763, 1841
GluI	GCNGC	8 cut(s)	57, 294, 879, 882, 1103, 1141, 1189, 1838
GsaI	CCCAGC	1 cut(s)	1161
GsuI	CTGGAG	1 cut(s)	842
HaeII	RGCGCY	1 cut(s)	1765
HaeIII	GGCC	7 cut(s)	21, 69, 110, 364, 863, 1124, 2029
HgaI	GACGC	2 cut(s)	1567, 1800
HhaI	GCGC	4 cut(s)	1326, 1419, 1764, 1842
Hin1I	GRCGYC	2 cut(s)	1559, 1762
Hin6I	GCGC	4 cut(s)	1324, 1417, 1762, 1840
HinP1I	GCGC	4 cut(s)	1324, 1417, 1762, 1840
HincII	GTYRAC	1 cut(s)	470
HindII	GTYRAC	1 cut(s)	470
HindIII	AAGCTT	2 cut(s)	328, 686
HphI	GGTGA	5 cut(s)	558, 758, 770, 880, 1216
Hpy166II	GTNNAC	2 cut(s)	257, 470
Hpy188I	TCNGA	5 cut(s)	940, 1363, 1409, 1607, 1802
Hpy188III	TCNNGA	6 cut(s)	376, 869, 1582, 1643, 1907, 2012
Hpy8I	GTNNAC	2 cut(s)	257, 470
Hpy99I	CGWCG	1 cut(s)	1598
HpyAV	CCTTC	7 cut(s)	265, 579, 911, 1136, 1294, 1904, 1952
HpyCH4III	ACNGT	3 cut(s)	252, 1598, 1859
HpyCH4IV	ACGT	5 cut(s)	472, 538, 561, 1753, 1888
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 971, 1454, 1619, 1655, 1706
HpySE526I	ACGT	5 cut(s)	472, 538, 561, 1753, 1888
Hsp92I	GRCGYC	2 cut(s)	1559, 1762
HspAI	GCGC	4 cut(s)	1324, 1417, 1762, 1840
KasI	GGCGCC	1 cut(s)	1761
KflI	GGGWCCC	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	457, 807
LguI	GCTCTTC	1 cut(s)	1046
LmnI	GCTCC	5 cut(s)	269, 440, 1171, 1185, 1537
Lsp1109I	GCAGC	7 cut(s)	68, 280, 868, 890, 1152, 1175, 1824
LweI	GCATC	6 cut(s)	961, 1335, 1600, 1636, 1696, 1958
MaeI	CTAG	7 cut(s)	9, 297, 650, 1680, 1695, 1746, 1934
MaeII	ACGT	5 cut(s)	472, 538, 561, 1753, 1888
MaeIII	GTNAC	8 cut(s)	401, 609, 746, 812, 1005, 1549, 1749, 1891
MalI	GATC	2 cut(s)	459, 809
MbiI	CCGCTC	1 cut(s)	1102
MboI	GATC	2 cut(s)	457, 807
MboII	GAAGA	9 cut(s)	161, 575, 843, 1063, 1067, 1081, 1284, 1334, 1989
MfeI	CAATTG	2 cut(s)	1734, 1877
MhlI	GDGCHC	2 cut(s)	1176, 1702
MlsI	TGGCCA	1 cut(s)	69
MluNI	TGGCCA	1 cut(s)	69
Mly113I	GGCGCC	1 cut(s)	1762
MlyI	GAGTC	3 cut(s)	198, 1451, 1778
MmeI	TCCRAC	3 cut(s)	674, 983, 1273
Mox20I	TGGCCA	1 cut(s)	69
Mph1103I	ATGCAT	1 cut(s)	976
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	5 cut(s)	24, 515, 534, 1497, 1587
MslI	CAYNNNNRTG	4 cut(s)	354, 1135, 1386, 1547
Msp20I	TGGCCA	1 cut(s)	69
MspA1I	CMGCKG	2 cut(s)	881, 1790
MspR9I	CCNGG	7 cut(s)	71, 268, 361, 860, 1066, 1555, 1727
MunI	CAATTG	2 cut(s)	1734, 1877
MvaI	CCWGG	7 cut(s)	71, 268, 361, 860, 1066, 1555, 1727
MwoI	GCNNNNNNNGC	6 cut(s)	18, 971, 1454, 1619, 1655, 1706
NarI	GGCGCC	1 cut(s)	1762
NdeI	CATATG	1 cut(s)	976
NdeII	GATC	2 cut(s)	457, 807
NheI	GCTAGC	2 cut(s)	8, 1933
NlaIV	GGNNCC	7 cut(s)	109, 365, 422, 423, 923, 982, 1763
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	5 cut(s)	746, 812, 1549, 1749, 1891
NsbI	TGCGCA	1 cut(s)	1841
NsiI	ATGCAT	1 cut(s)	976
NspI	RCATGY	1 cut(s)	1231
NspV	TTCGAA	1 cut(s)	602
PceI	AGGCCT	1 cut(s)	863
PciSI	GCTCTTC	1 cut(s)	1046
PfeI	GAWTC	7 cut(s)	314, 776, 1072, 1087, 1163, 1410, 1976
PflMI	CCANNNNNTGG	1 cut(s)	787
PfoI	TCCNGGA	2 cut(s)	266, 1725
PkrI	GCNGC	8 cut(s)	58, 295, 880, 883, 1104, 1142, 1190, 1839
PleI	GAGTC	3 cut(s)	197, 1450, 1778
PluTI	GGCGCC	1 cut(s)	1765
PpsI	GAGTC	3 cut(s)	197, 1450, 1778
Ppu21I	YACGTR	2 cut(s)	1754, 1889
PpuMI	RGGWCCY	1 cut(s)	421
Psp1406I	AACGTT	1 cut(s)	561
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	7 cut(s)	69, 266, 359, 858, 1064, 1553, 1725
PspFI	CCCAGC	1 cut(s)	1157
PspGI	CCWGG	7 cut(s)	69, 266, 359, 858, 1064, 1553, 1725
PspN4I	GGNNCC	7 cut(s)	109, 365, 422, 423, 923, 982, 1763
PspPI	GGNCC	6 cut(s)	108, 363, 421, 922, 936, 1123
PspPPI	RGGWCCY	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	267
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	3 cut(s)	249, 622, 1963
RsaNI	GTAC	3 cut(s)	248, 621, 1962
RseI	CAYNNNNRTG	4 cut(s)	354, 1135, 1386, 1547
SapI	GCTCTTC	1 cut(s)	1046
SaqAI	TTAA	5 cut(s)	24, 515, 534, 1497, 1587
SatI	GCNGC	8 cut(s)	57, 294, 879, 882, 1103, 1141, 1189, 1838
Sau3AI	GATC	2 cut(s)	457, 807
Sau96I	GGNCC	6 cut(s)	108, 363, 421, 922, 936, 1123
SchI	GAGTC	3 cut(s)	198, 1451, 1778
ScrFI	CCNGG	7 cut(s)	71, 268, 361, 860, 1066, 1555, 1727
SduI	GDGCHC	2 cut(s)	1176, 1702
SfaNI	GCATC	6 cut(s)	961, 1335, 1600, 1636, 1696, 1958
SfcI	CTRYAG	2 cut(s)	340, 2035
SfoI	GGCGCC	1 cut(s)	1763
SfuI	TTCGAA	1 cut(s)	602
SinI	GGWCC	3 cut(s)	421, 922, 936
SmiMI	CAYNNNNRTG	4 cut(s)	354, 1135, 1386, 1547
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
SseBI	AGGCCT	1 cut(s)	863
SsiI	CCGC	4 cut(s)	239, 1102, 1613, 1790
SspDI	GGCGCC	1 cut(s)	1761
SspMI	CTAG	7 cut(s)	9, 297, 650, 1680, 1695, 1746, 1934
StuI	AGGCCT	1 cut(s)	863
StyD4I	CCNGG	7 cut(s)	69, 266, 359, 858, 1064, 1553, 1725
StyI	CCWWGG	3 cut(s)	16, 1574, 1829
TaaI	ACNGT	3 cut(s)	252, 1598, 1859
TaiI	ACGT	5 cut(s)	475, 541, 564, 1756, 1891
TaqI	TCGA	5 cut(s)	602, 716, 909, 1199, 2011
TaqII	GACCGA	1 cut(s)	247
TauI	GCSGC	1 cut(s)	1105
TfiI	GAWTC	7 cut(s)	314, 776, 1072, 1087, 1163, 1410, 1976
Tru1I	TTAA	5 cut(s)	24, 515, 534, 1497, 1587
Tru9I	TTAA	5 cut(s)	24, 515, 534, 1497, 1587
TscAI	CASTG	2 cut(s)	817, 1314
TseFI	GTSAC	5 cut(s)	746, 812, 1549, 1749, 1891
TseI	GCWGC	7 cut(s)	56, 293, 878, 881, 1140, 1188, 1837
Tsp45I	GTSAC	5 cut(s)	746, 812, 1549, 1749, 1891
TspGWI	ACGGA	2 cut(s)	1063, 1796
TspRI	CASTG	2 cut(s)	817, 1314
Van91I	CCANNNNNTGG	1 cut(s)	787
VpaK11BI	GGWCC	3 cut(s)	421, 922, 936
XceI	RCATGY	1 cut(s)	1231
XspI	CTAG	7 cut(s)	9, 297, 650, 1680, 1695, 1746, 1934
Zsp2I	ATGCAT	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.