Rmu_sc0000299.1_g000027

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000299.1
OG0008331
Physical Location & Seq
Forward (+)
122184 .. 122531
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000299.1_g000027.1.cds

Sequence Viewer

Length: 348 bp
atggcacagagtcttctgaaactaccctggtctatgcctctatggcacaccatcgacacgggtggggagttatccggctaccacagagattggaaggacgtggagaagatgtgccgcaacgccattgatcgcagctctggtcaattggtcgatatctcgtgcgtatatggcagtaacgacctccttaagtacgtcggtgacagatgcaatggtatcagacgactaactttgcattggtgctctagaataatagatggtgttttgaatgaagtagcttctaaattaccgctattggaggagcttcacctgttcaaacttgtagatgctcactctcgcctaaaactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

115

Amino Acids

13.16

Weight (kDa)

7.72

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 115, 287
AfaI GTAC 1 cut(s) 191
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 2 cut(s) 265, 313
AjiI CACGTC 1 cut(s) 100
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 3 cut(s) 135, 275, 301
AluI AGCT 3 cut(s) 135, 275, 301
Alw21I GWGCWC 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 132
AsuHPI GGTGA 2 cut(s) 209, 296
BauI CACGAG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 144
BccI CCATC 2 cut(s) 59, 248
BciT130I CCWGG 1 cut(s) 28
BfaI CTAG 2 cut(s) 243, 346
BfrI CTTAAG 1 cut(s) 185
BglI GCCNNNNNGGC 1 cut(s) 43
BisI GCNGC 2 cut(s) 115, 133
BlsI GCNGC 2 cut(s) 116, 134
Bme1390I CCNGG 1 cut(s) 28
BmgBI CACGTC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 2 cut(s) 194, 313
BpiI GAAGAC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 26
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 242
BsiSI CCGG 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 2 cut(s) 115, 287
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 1 cut(s) 127
BssSI CACGAG 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 28
BstAFI CTTAAG 1 cut(s) 185
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 43, 168
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 190
CspCI CAANNNNNGTGG 2 cut(s) 71, 106
CviJI RGCY 4 cut(s) 78, 135, 275, 301
CviKI_1 RGCY 4 cut(s) 78, 135, 275, 301
CviQI GTAC 1 cut(s) 190
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eco32I GATATC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 26
EcoRV GATATC 1 cut(s) 154
FaiI YATR 4 cut(s) 35, 43, 166, 168
Fnu4HI GCNGC 2 cut(s) 115, 133
Fsp4HI GCNGC 2 cut(s) 115, 133
FspBI CTAG 2 cut(s) 243, 346
GluI GCNGC 2 cut(s) 115, 133
HapII CCGG 1 cut(s) 75
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 75
HphI GGTGA 2 cut(s) 209, 296
Hpy188I TCNGA 2 cut(s) 18, 218
Hpy188III TCNNGA 1 cut(s) 243
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 88
HpyCH4IV ACGT 2 cut(s) 99, 192
HpyCH4V TGCA 2 cut(s) 207, 232
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 168
HpySE526I ACGT 2 cut(s) 99, 192
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 5 cut(s) 13, 40, 88, 123, 320
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 2 cut(s) 194, 313
MaeI CTAG 2 cut(s) 243, 346
MaeII ACGT 2 cut(s) 99, 192
MaeIII GTNAC 2 cut(s) 173, 197
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 2 cut(s) 5, 118
MfeI CAATTG 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 2 cut(s) 143, 281
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 3 cut(s) 48, 191, 289
MseI TTAA 1 cut(s) 186
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 28
MunI CAATTG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 43, 168
NdeII GATC 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 116, 134
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 2 cut(s) 115, 133
Sau3AI GATC 1 cut(s) 127
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 1 cut(s) 242
SetI ASST 7 cut(s) 102, 137, 183, 195, 277, 303, 309
SfaNI GCATC 2 cut(s) 194, 313
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 2 cut(s) 143, 281
SsiI CCGC 2 cut(s) 115, 287
SspMI CTAG 2 cut(s) 243, 346
StyD4I CCNGG 1 cut(s) 26
TaiI ACGT 2 cut(s) 102, 195
TaqI TCGA 2 cut(s) 54, 150
TasI AATT 2 cut(s) 143, 281
TauI GCSGC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 282
Vha464I CTTAAG 1 cut(s) 185
XbaI TCTAGA 1 cut(s) 242
XspI CTAG 2 cut(s) 243, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.