Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009568

Physical Location & Seq

Genomic Coordinates Reverse (-)

27931723 .. 27933632

Gene Structure 1910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGATTTGCCGCGAAATAGTGAACCGCACTCTAGTGTTGTCTCTTTATTGTACCCTCGAAGCCAGAAGCAGAAAGCAGAAAGCACAAAAAAGCAGAAAGCAGAGTTCGAAAACTACAAAAATGGCGACTCTTTCACTCTCCTCCACTTCACCACCGACTGTCTCTCTCTACAACGTCAGCAACAGCGGCACTGCCACCTCCAAATTCTCCGCCTTTCAACTGAGGTCGGCCAAGCTCTCTTGTCTTCGTCTGAGCTCACTCCACCGCAACCCTCTCAGAGTTTCGATTGGTGGAAAGAAGGAGTTCATGGTGATGAAGGGTAAGAGGAGGGGATCGGGTGCGACGTGTTACGCTGCACCTCTCTCTGTCAACACCCTCCAGTTTGTCTCCACCATCTCTTCTGCGATTCTGTTGCTTGCAAAAGGGACTGCTGTTCAGAAATCATTTCTTGTTCCCTTATTTCTTCTACAAGCACCGGATGCCATCATCTCATGGATTAAGAGTGAATATGGTTTCTGGACTGCGTTCCTAGCCCTTCTTGTTCGTCTCTTCTTCTTTATTCCCGGGGAACTTGAGTTGCCATTGGCAGCATTACTCCTGGTGATTGTGGCTCCTCACCAAGTTCTGAAAATAAGGGGAAGACAAGAAGGTGCTATTATTGCACTGGTCGTTGCAGCATATTTGGCTTTCCAGCACTTCTCACGAATAGGAAGCCTGCAGAGATCATTTGAGCGAGGTTCAATTATTGCTACCATAGCCATCATTTCCATCACTGTTCTGTCATGCTTGTTCCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009631 GO:0009706 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031668 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0033993 GO:0034357 GO:0042170 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

267

Amino Acids

29.16

Weight (kDa)

10.67

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	102 - 256	1.8e-48	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29390 AT1G29390 AT1G29395
fragaria_vesca	FvH4_3g06340 FvH4_3g06340
malus_domestica	MD05G1291300.v1.1 MD10G1267000.v1.1 MD13G1187800.v1.1
prunus_persica	Prupe.4G074300_v2.0.a1 Prupe.4G074300_v2.0.a1
pyrus_communis	pycom05g26780 pycom10g22320
rosa_chinensis	RchiOBHm_Chr5g0012971
rosa_laevigata	RLG00000031973
rosa_multiflora	Rmu_sc0010837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063610
rosa_rugosa	Rorug05G0005600
rosa_samantha	Rh5AG100000 Rh5BG096700 Rh5CG109000 Rh5DG095500
rosa_wichuraiana	Rw5G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	12
AciI	CCGC	5 cut(s)	10, 25, 186, 210, 265
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	203
AfaI	GTAC	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	218, 741
AjiI	CACGTC	1 cut(s)	345
AjnI	CCWGG	1 cut(s)	597
AleI	CACNNNNGTG	1 cut(s)	32
AluBI	AGCT	2 cut(s)	235, 255
AluI	AGCT	2 cut(s)	235, 255
Alw21I	GWGCWC	1 cut(s)	257
Alw26I	GTCTC	4 cut(s)	45, 166, 391, 551
AlwI	GGATC	1 cut(s)	340
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	3 cut(s)	353, 587, 674
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	302
AsuC2I	CCSGG	2 cut(s)	564, 565
AsuHPI	GGTGA	4 cut(s)	141, 322, 608, 613
AsuII	TTCGAA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	563
BanII	GRGCYC	1 cut(s)	257
BbsI	GAAGAC	2 cut(s)	236, 646
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	3 cut(s)	340, 599, 686
BccI	CCATC	4 cut(s)	401, 491, 767, 776
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	1 cut(s)	599
BcnI	CCSGG	2 cut(s)	564, 565
BcoDI	GTCTC	4 cut(s)	45, 166, 391, 551
BfaI	CTAG	2 cut(s)	32, 530
BfmI	CTRYAG	1 cut(s)	716
BisI	GCNGC	5 cut(s)	10, 187, 354, 588, 675
BlsI	GCNGC	5 cut(s)	11, 188, 355, 589, 676
Bme1390I	CCNGG	3 cut(s)	564, 565, 599
BmeT110I	CYCGRG	1 cut(s)	563
BmgBI	CACGTC	1 cut(s)	345
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	3 cut(s)	564, 565, 599
BmsI	GCATC	1 cut(s)	469
BpiI	GAAGAC	2 cut(s)	236, 646
BpmI	CTGGAG	1 cut(s)	362
Bpu14I	TTCGAA	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	2 cut(s)	564, 565
BsaJI	CCNNGG	2 cut(s)	563, 564
BsaWI	WCCGGW	1 cut(s)	475
Bse1I	ACTGG	2 cut(s)	379, 669
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	2 cut(s)	563, 564
BseGI	GGATG	1 cut(s)	484
BseMII	CTCAG	3 cut(s)	212, 242, 289
BseNI	ACTGG	2 cut(s)	379, 669
BseRI	GAGGAG	3 cut(s)	130, 340, 603
BseXI	GCAGC	3 cut(s)	340, 599, 686
BsgI	GTGCAG	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	257
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	2 cut(s)	476, 564
BslFI	GGGAC	1 cut(s)	439
BsmAI	GTCTC	4 cut(s)	45, 166, 391, 551
BsmBI	CGTCTC	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	563
Bsp119I	TTCGAA	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	332, 722
BspACI	CCGC	5 cut(s)	10, 25, 186, 210, 265
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	3 cut(s)	213, 243, 288
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	612
BspMAI	CTGCAG	1 cut(s)	720
BspPI	GGATC	1 cut(s)	340
BspT104I	TTCGAA	1 cut(s)	107
BsrI	ACTGG	2 cut(s)	379, 669
BssECI	CCNNGG	2 cut(s)	563, 564
BssMI	GATC	2 cut(s)	332, 722
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	160, 775
Bst6I	CTCTTC	2 cut(s)	403, 554
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstBI	TTCGAA	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	417, 716
BstDEI	CTNAG	3 cut(s)	221, 251, 275
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	2 cut(s)	335, 725
BstMAI	GTCTC	4 cut(s)	45, 166, 391, 551
BstMBI	GATC	2 cut(s)	332, 722
BstMWI	GCNNNNNNNGC	6 cut(s)	186, 479, 530, 659, 683, 755
BstNI	CCWGG	1 cut(s)	599
BstSCI	CCNGG	3 cut(s)	562, 563, 597
BstSFI	CTRYAG	1 cut(s)	716
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	340, 599, 686
BstV2I	GAAGAC	2 cut(s)	236, 646
BsuRI	GGCC	1 cut(s)	230
BtrI	CACGTC	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	189, 662, 771
Cac8I	GCNNGC	2 cut(s)	417, 716
Cfr9I	CCCGGG	1 cut(s)	563
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	3 cut(s)	307, 492, 783
CviJI	RGCY	9 cut(s)	62, 230, 235, 255, 533, 611, 686, 714, 758
CviKI_1	RGCY	9 cut(s)	62, 230, 235, 255, 533, 611, 686, 714, 758
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	3 cut(s)	221, 251, 275
DpnI	GATC	2 cut(s)	334, 724
DpnII	GATC	2 cut(s)	332, 722
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	403, 554
EarI	CTCTTC	2 cut(s)	403, 554
EciI	GGCGGA	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	257
Esp3I	CGTCTC	1 cut(s)	551
FaeI	CATG	3 cut(s)	310, 495, 786
FaiI	YATR	6 cut(s)	308, 493, 510, 679, 755, 784
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	3 cut(s)	306, 491, 782
Fnu4HI	GCNGC	5 cut(s)	10, 187, 354, 588, 675
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	5 cut(s)	10, 187, 354, 588, 675
FspBI	CTAG	2 cut(s)	32, 530
GluI	GCNGC	5 cut(s)	10, 187, 354, 588, 675
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	2 cut(s)	476, 564
Hin1II	CATG	3 cut(s)	310, 495, 786
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	127, 406
HpaII	CCGG	2 cut(s)	476, 564
HphI	GGTGA	4 cut(s)	141, 322, 608, 613
Hpy166II	GTNNAC	2 cut(s)	22, 370
Hpy188I	TCNGA	5 cut(s)	252, 278, 438, 627, 800
Hpy188III	TCNNGA	2 cut(s)	517, 702
Hpy8I	GTNNAC	2 cut(s)	22, 370
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	4 cut(s)	292, 310, 545, 641
HpyCH4III	ACNGT	2 cut(s)	160, 775
HpyCH4IV	ACGT	2 cut(s)	174, 344
HpyCH4V	TGCA	5 cut(s)	356, 419, 662, 674, 718
HpyF10VI	GCNNNNNNNGC	6 cut(s)	186, 479, 530, 659, 683, 755
HpyF3I	CTNAG	3 cut(s)	221, 251, 275
HpySE526I	ACGT	2 cut(s)	174, 344
Hsp92II	CATG	3 cut(s)	310, 495, 786
Kzo9I	GATC	2 cut(s)	332, 722
LmnI	GCTCC	1 cut(s)	616
Lsp1109I	GCAGC	3 cut(s)	340, 599, 686
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	32, 530
MaeII	ACGT	2 cut(s)	174, 344
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	2 cut(s)	334, 724
MboI	GATC	2 cut(s)	332, 722
MboII	GAAGA	6 cut(s)	236, 390, 455, 541, 544, 651
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	2 cut(s)	203, 741
MlyI	GAGTC	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	302
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	2 cut(s)	32, 311
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	2 cut(s)	476, 564
MspR9I	CCNGG	3 cut(s)	564, 565, 599
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	6 cut(s)	186, 479, 530, 659, 683, 755
NciI	CCSGG	2 cut(s)	564, 565
NdeII	GATC	2 cut(s)	332, 722
NlaIII	CATG	3 cut(s)	310, 495, 786
NlaIV	GGNNCC	1 cut(s)	612
NspV	TTCGAA	1 cut(s)	107
OliI	CACNNNNGTG	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	5 cut(s)	11, 188, 355, 589, 676
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	1 cut(s)	612
PstI	CTGCAG	1 cut(s)	720
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
RseI	CAYNNNNRTG	2 cut(s)	32, 311
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	5 cut(s)	10, 187, 354, 588, 675
Sau3AI	GATC	2 cut(s)	332, 722
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	3 cut(s)	564, 565, 599
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	9 cut(s)	177, 200, 227, 237, 257, 347, 361, 652, 739
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	1 cut(s)	716
SfuI	TTCGAA	1 cut(s)	107
SmaI	CCCGGG	1 cut(s)	565
SmiMI	CAYNNNNRTG	2 cut(s)	32, 311
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	2 cut(s)	203, 741
SsiI	CCGC	5 cut(s)	10, 25, 186, 210, 265
SspMI	CTAG	2 cut(s)	32, 530
SstI	GAGCTC	1 cut(s)	257
StyD4I	CCNGG	3 cut(s)	562, 563, 597
TaaI	ACNGT	2 cut(s)	160, 775
TaiI	ACGT	2 cut(s)	177, 347
TaqI	TCGA	3 cut(s)	57, 107, 284
TasI	AATT	2 cut(s)	203, 741
TauI	GCSGC	2 cut(s)	12, 189
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	3 cut(s)	196, 669, 778
TseI	GCWGC	3 cut(s)	353, 587, 674
TspDTI	ATGAA	2 cut(s)	295, 329
TspMI	CCCGGG	1 cut(s)	563
TspRI	CASTG	3 cut(s)	196, 669, 778
XapI	RAATTY	1 cut(s)	203
XmaI	CCCGGG	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	2 cut(s)	32, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.