Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006661

Physical Location & Seq

Genomic Coordinates Forward (+)

28294108 .. 28295242

Gene Structure 1135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCGCCCGAACCAAACCAACAACCGCCAAGCAATTGGGAAAGCAAGAAATTTGAAGTTTGAGGAAATGGTGTCCAAGATTGTGAAGAAGAGCGCCAACAGGCGACGCAATCGCGGAAAGTCCTCGGCCAAGAAGGCGGCAGTCGCGGCCTCCTCCGCCGTGCTGGCCTCCCTCTTCACTTGCCCGCGCCGCCTCGTCAAGCTCTTCGCGAAACTTGCGCGAATTGGCACTCCGAACCGCCACAAGGGCTTCAAGATCCTCAAGAAAGCCCAAGTCCATGAAGGGGAGCCGGAATCCGAACCTGGATCGGGAAACCCGCTCTGCCGCAAGCTCTTGTTCGAGCCGCCCCTTCCGCCGCTTTTCTATCCGGAGACGATGACGGTGATTCTCGATCTGGATGAGACCTTGGTGCACGCACAGGCCGACCCGCCTCCGGAGAAGTTCGATTTCATAGTGCGGCCGAAGATCGACGGAATCGAGATGAATTTTTATGTTCTTAAGCGGCCCGGAGTGGACGAGTTGTTGGAGAAGTTAGGGGCGATGTACGAGGTGGTGGTGTTCACGGCAGGGTTGAGAGAGTACGCGTCGCTGGTGCTGGACCGGTTGGACCGGAAACGGGCGATTTCGCACCGGCTCTATCGGGACGCGTGTAAAGAAGTGGACGGGAAGTTCGTGAAGGACTTGTCCGGGCTGGGGAGGGACTTGAGCCGGGTGGTGATTGTGGATGACAATCCCAATTCGTACCTCTTTCAACCGGAGAATGCTGTTCCGGTCCGACCGTTTGTGGAGGACATGGCGGACCGGGAACTGGGGAGATTGGTGGAGTTCTTTGAAGGGTTGGATTGTGAGGACATGAGGGACGCTGTGAAGAAATTTGTTGGCTGCGGCGGCGGAGGCGACGGCGGTGGATCAAAAGACGGCAAAGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

311

Amino Acids

34.53

Weight (kDa)

9.31

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	127 - 281	8.2e-54	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29770 AT1G29780 AT5G45700
fragaria_vesca	FvH4_3g07100 FvH4_3g07110 FvH4_3g36710
malus_domestica	MD00G1007300.v1.1 MD00G1007500.v1.1 MD10G1273900.v1.1 MD10G1274000.v1.1
prunus_persica	Prupe.4G068500_v2.0.a1 Prupe.4G068600_v2.0.a1
pyrus_communis	pycom05g27270 pycom10g22870
rosa_chinensis	RchiOBHm_Chr5g0012001 RchiOBHm_Chr5g0012011
rosa_laevigata	RLG00000031878
rosa_multiflora	Rmu_co8217880.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064580
rosa_rugosa	Rorug04G0460300 Rorug04G0460300
rosa_samantha	Rh5BG088100 Rh5BG088200 Rh5CG102000 Rh5DG088700
rosa_wichuraiana	Rw5G008060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	319
AccII	CGCG	7 cut(s)	114, 146, 187, 209, 220, 584, 647
AccIII	TCCGGA	2 cut(s)	367, 433
AclWI	GGATC	3 cut(s)	250, 313, 916
AcoI	YGGCCR	2 cut(s)	126, 458
AcsI	RAATTY	3 cut(s)	49, 484, 872
AfaI	GTAC	3 cut(s)	545, 581, 743
AfiI	CCNNNNNNNGG	7 cut(s)	244, 283, 308, 433, 616, 693, 808
AflII	CTTAAG	1 cut(s)	497
AflIII	ACRYGT	2 cut(s)	582, 645
AgeI	ACCGGT	1 cut(s)	600
AgsI	TTSAA	4 cut(s)	55, 253, 752, 833
AjnI	CCWGG	1 cut(s)	301
AloI	GAACNNNNNNTCC	2 cut(s)	653, 685
AluBI	AGCT	2 cut(s)	202, 331
AluI	AGCT	2 cut(s)	202, 331
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	2 cut(s)	365, 395
Alw44I	GTGCAC	1 cut(s)	410
AlwI	GGATC	3 cut(s)	250, 313, 916
Aor13HI	TCCGGA	2 cut(s)	367, 433
AoxI	GGCC	6 cut(s)	126, 147, 165, 420, 458, 503
ApaLI	GTGCAC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	882
ApoI	RAATTY	3 cut(s)	49, 484, 872
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
AsiGI	ACCGGT	1 cut(s)	600
AspLEI	GCGC	4 cut(s)	6, 95, 189, 220
AspS9I	GGNCC	5 cut(s)	504, 598, 607, 772, 799
AsuC2I	CCSGG	4 cut(s)	507, 688, 710, 803
AsuHPI	GGTGA	2 cut(s)	394, 727
AvaII	GGWCC	4 cut(s)	598, 607, 772, 799
BaeGI	GKGCMC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	869
BceAI	ACGGC	3 cut(s)	143, 579, 916
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	4 cut(s)	507, 688, 710, 803
BcoDI	GTCTC	2 cut(s)	365, 395
BfoI	RGCGCY	1 cut(s)	96
BfrI	CTTAAG	1 cut(s)	497
BglI	GCCNNNNNGGC	3 cut(s)	134, 164, 246
Bme1390I	CCNGG	5 cut(s)	303, 507, 688, 710, 803
Bme18I	GGWCC	4 cut(s)	598, 607, 772, 799
BmgT120I	GGNCC	5 cut(s)	504, 598, 607, 772, 799
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	5 cut(s)	303, 507, 688, 710, 803
BmrI	ACTGGG	1 cut(s)	818
BmuI	ACTGGG	1 cut(s)	818
BpuEI	CTTGAG	2 cut(s)	245, 724
BpuMI	CCSGG	4 cut(s)	507, 688, 710, 803
BsaBI	GATNNNNATC	1 cut(s)	729
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	123, 405
BsaWI	WCCGGW	6 cut(s)	367, 433, 600, 609, 754, 769
Bsc4I	CCNNNNNNNGG	7 cut(s)	244, 283, 308, 433, 616, 693, 808
Bse118I	RCCGGY	2 cut(s)	600, 630
Bse1I	ACTGG	1 cut(s)	813
Bse8I	GATNNNNATC	1 cut(s)	729
BseAI	TCCGGA	2 cut(s)	367, 433
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	123, 405
BseGI	GGATG	2 cut(s)	403, 730
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	7 cut(s)	244, 283, 308, 433, 616, 693, 808
BseNI	ACTGG	1 cut(s)	813
BseRI	GAGGAG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	414
BseX3I	CGGCCG	1 cut(s)	458
BseXI	GCAGC	1 cut(s)	869
BseYI	CCCAGC	1 cut(s)	691
Bsh1236I	CGCG	7 cut(s)	114, 146, 187, 209, 220, 584, 647
Bsh1285I	CGRYCG	2 cut(s)	461, 779
BshFI	GGCC	6 cut(s)	128, 149, 167, 422, 460, 505
BshTI	ACCGGT	1 cut(s)	600
BsiEI	CGRYCG	2 cut(s)	461, 779
BsiHKAI	GWGCWC	1 cut(s)	414
BslFI	GGGAC	3 cut(s)	656, 713, 872
BslI	CCNNNNNNNGG	7 cut(s)	244, 283, 308, 433, 616, 693, 808
BsmAI	GTCTC	2 cut(s)	365, 395
BsmBI	CGTCTC	1 cut(s)	365
BsmFI	GGGAC	3 cut(s)	656, 713, 872
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	6 cut(s)	128, 149, 167, 422, 460, 505
Bso31I	GGTCTC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp13I	TCCGGA	2 cut(s)	367, 433
Bsp143I	GATC	5 cut(s)	255, 305, 391, 465, 908
Bsp68I	TCGCGA	1 cut(s)	209
BspANI	GGCC	6 cut(s)	128, 149, 167, 422, 460, 505
BspEI	TCCGGA	2 cut(s)	367, 433
BspFNI	CGCG	7 cut(s)	114, 146, 187, 209, 220, 584, 647
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	3 cut(s)	250, 313, 916
BspQI	GCTCTTC	2 cut(s)	83, 209
BspTI	CTTAAG	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	319
BsrFI	RCCGGY	2 cut(s)	600, 630
BsrI	ACTGG	1 cut(s)	813
BssAI	RCCGGY	2 cut(s)	600, 630
BssECI	CCNNGG	2 cut(s)	123, 405
BssMI	GATC	5 cut(s)	255, 305, 391, 465, 908
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	382, 780
Bst6I	CTCTTC	3 cut(s)	83, 179, 209
BstAFI	CTTAAG	1 cut(s)	497
BstC8I	GCNNGC	4 cut(s)	165, 185, 329, 414
BstF5I	GGATG	2 cut(s)	403, 730
BstFNI	CGCG	7 cut(s)	114, 146, 187, 209, 220, 584, 647
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	4 cut(s)	6, 95, 189, 220
BstKTI	GATC	5 cut(s)	258, 308, 394, 468, 911
BstMAI	GTCTC	2 cut(s)	365, 395
BstMBI	GATC	5 cut(s)	255, 305, 391, 465, 908
BstMCI	CGRYCG	2 cut(s)	461, 779
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	5 cut(s)	301, 505, 686, 708, 801
BstSLI	GKGCMC	1 cut(s)	414
BstUI	CGCG	7 cut(s)	114, 146, 187, 209, 220, 584, 647
BstV1I	GCAGC	1 cut(s)	869
BstX2I	RGATCY	1 cut(s)	255
BstXI	CCANNNNNNTGG	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	255
BstZI	CGGCCG	1 cut(s)	458
BsuRI	GGCC	6 cut(s)	128, 149, 167, 422, 460, 505
BtgZI	GCGATG	1 cut(s)	554
BtsCI	GGATG	2 cut(s)	403, 730
BtsI	GCAGTG	1 cut(s)	933
BtsIMutI	CAGTG	1 cut(s)	933
BtuMI	TCGCGA	1 cut(s)	209
Cac8I	GCNNGC	4 cut(s)	165, 185, 329, 414
CfoI	GCGC	4 cut(s)	6, 95, 189, 220
Cfr10I	RCCGGY	2 cut(s)	600, 630
Cfr13I	GGNCC	5 cut(s)	504, 598, 607, 772, 799
CpoI	CGGWCCG	2 cut(s)	772, 799
CseI	GACGC	4 cut(s)	114, 573, 653, 869
Csp6I	GTAC	3 cut(s)	544, 580, 742
CspAI	ACCGGT	1 cut(s)	600
CspI	CGGWCCG	2 cut(s)	772, 799
CviAII	CATG	3 cut(s)	278, 793, 853
CviQI	GTAC	3 cut(s)	544, 580, 742
DpnI	GATC	5 cut(s)	257, 307, 393, 467, 910
DpnII	GATC	5 cut(s)	255, 305, 391, 465, 908
EaeI	YGGCCR	2 cut(s)	126, 458
EagI	CGGCCG	1 cut(s)	458
Eam1104I	CTCTTC	3 cut(s)	83, 179, 209
EarI	CTCTTC	3 cut(s)	83, 179, 209
EciI	GGCGGA	4 cut(s)	145, 342, 812, 906
EclXI	CGGCCG	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	4 cut(s)	598, 607, 772, 799
Eco52I	CGGCCG	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
Esp3I	CGTCTC	1 cut(s)	365
FaeI	CATG	3 cut(s)	281, 796, 856
FaiI	YATR	5 cut(s)	279, 452, 492, 794, 854
FaqI	GGGAC	3 cut(s)	656, 713, 872
FatI	CATG	3 cut(s)	277, 792, 852
FauI	CCCGC	3 cut(s)	192, 324, 435
FokI	GGATG	2 cut(s)	410, 737
GlaI	GCGC	4 cut(s)	5, 94, 188, 219
GsaI	CCCAGC	1 cut(s)	695
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	6 cut(s)	128, 149, 167, 422, 460, 505
HgaI	GACGC	4 cut(s)	114, 573, 653, 869
HhaI	GCGC	4 cut(s)	6, 95, 189, 220
Hin1II	CATG	3 cut(s)	281, 796, 856
Hin6I	GCGC	4 cut(s)	4, 93, 187, 218
HinP1I	GCGC	4 cut(s)	4, 93, 187, 218
HinfI	GANTC	3 cut(s)	293, 385, 474
HphI	GGTGA	2 cut(s)	394, 727
Hpy166II	GTNNAC	4 cut(s)	412, 514, 561, 661
Hpy188I	TCNGA	3 cut(s)	234, 298, 776
Hpy8I	GTNNAC	4 cut(s)	412, 514, 561, 661
Hpy99I	CGWCG	4 cut(s)	108, 473, 589, 902
HpyAV	CCTTC	5 cut(s)	127, 275, 359, 670, 827
HpyCH4III	ACNGT	2 cut(s)	382, 780
HpyCH4V	TGCA	1 cut(s)	412
Hsp92II	CATG	3 cut(s)	281, 796, 856
HspAI	GCGC	4 cut(s)	4, 93, 187, 218
Kpn2I	TCCGGA	2 cut(s)	367, 433
Kzo9I	GATC	5 cut(s)	255, 305, 391, 465, 908
LguI	GCTCTTC	2 cut(s)	83, 209
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	1 cut(s)	869
MalI	GATC	5 cut(s)	257, 307, 393, 467, 910
MbiI	CCGCTC	1 cut(s)	319
MboI	GATC	5 cut(s)	255, 305, 391, 465, 908
MboII	GAAGA	6 cut(s)	97, 100, 166, 196, 475, 880
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	6 cut(s)	33, 49, 222, 484, 736, 872
MluI	ACGCGT	2 cut(s)	582, 645
MmeI	TCCRAC	4 cut(s)	504, 585, 799, 819
MroI	TCCGGA	2 cut(s)	367, 433
MseI	TTAA	1 cut(s)	498
MspCI	CTTAAG	1 cut(s)	497
MspR9I	CCNGG	5 cut(s)	303, 507, 688, 710, 803
MunI	CAATTG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	7 cut(s)	114, 146, 187, 209, 220, 584, 647
NciI	CCSGG	4 cut(s)	507, 688, 710, 803
NdeII	GATC	5 cut(s)	255, 305, 391, 465, 908
NlaIII	CATG	3 cut(s)	281, 796, 856
NlaIV	GGNNCC	1 cut(s)	288
NmeAIII	GCCGAG	1 cut(s)	104
NruI	TCGCGA	1 cut(s)	209
PciSI	GCTCTTC	2 cut(s)	83, 209
PcsI	WCGNNNNNNNCGW	3 cut(s)	420, 474, 669
PctI	GAATGC	1 cut(s)	766
PfeI	GAWTC	3 cut(s)	293, 385, 474
PinAI	ACCGGT	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	5 cut(s)	504, 598, 607, 772, 799
PsuI	RGATCY	1 cut(s)	255
RruI	TCGCGA	1 cut(s)	209
RsaI	GTAC	3 cut(s)	545, 581, 743
RsaNI	GTAC	3 cut(s)	544, 580, 742
Rsr2I	CGGWCCG	2 cut(s)	772, 799
RsrII	CGGWCCG	2 cut(s)	772, 799
SapI	GCTCTTC	2 cut(s)	83, 209
SaqAI	TTAA	1 cut(s)	498
Sau3AI	GATC	5 cut(s)	255, 305, 391, 465, 908
Sau96I	GGNCC	5 cut(s)	504, 598, 607, 772, 799
ScrFI	CCNGG	5 cut(s)	303, 507, 688, 710, 803
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	6 cut(s)	204, 304, 333, 407, 552, 747
SinI	GGWCC	4 cut(s)	598, 607, 772, 799
SmlI	CTYRAG	3 cut(s)	260, 497, 703
SmoI	CTYRAG	3 cut(s)	260, 497, 703
Sse9I	AATT	6 cut(s)	33, 49, 222, 484, 736, 872
StyD4I	CCNGG	5 cut(s)	301, 505, 686, 708, 801
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	382, 780
TaqI	TCGA	5 cut(s)	339, 390, 444, 468, 477
TasI	AATT	6 cut(s)	33, 49, 222, 484, 736, 872
TfiI	GAWTC	3 cut(s)	293, 385, 474
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	933
TseI	GCWGC	1 cut(s)	882
TspDTI	ATGAA	3 cut(s)	294, 439, 497
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	933
Vha464I	CTTAAG	1 cut(s)	497
VneI	GTGCAC	1 cut(s)	410
VpaK11BI	GGWCC	4 cut(s)	598, 607, 772, 799
XapI	RAATTY	3 cut(s)	49, 484, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.