Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004775

Physical Location & Seq

Genomic Coordinates Reverse (-)

28773410 .. 28775098

Gene Structure 1689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCTTCAGGGAAGAAAGCAGTTAAGGGACCTTGTGAAGCAGGTTCAAGGTGCTCGTGACGAAATGCAATGGGGTGAGGAGGGTCCTCCTCCATTGCTTGTGAAAATTGCTCCAGATTTGTCTAAAGAGGACCTTGAAGATATTGCTGCAGTTGCCCTTGCCCTTCGCTTGGACGGATTGATTATATCAAATACAACTGTTTCAAGACCAGAATCTGTTCGTAAACACCTGGTGGCTTCTGAAGCTGGTGGCTTGAGTGGGAAGCCACTTTTCGATATGTCTACCAATGTCTTAAAGGAGATGTACATTTTGACGAGGGGAAAGATTCCTTTAATTGGGTGTGGAGGCGTTAGCAGTGGTGAGGATGCTTACAAGAAAGTACGAGCTGGTGCGAGTCTTGTTCAGCTTTATACAGCATTTGCTTACGGGGGACCTGCTCTCATCCCCCAGATAAAGGCTGAATTGTCCGAGTGCTTAGAAAGGGATGGTTACAAGTCCATCAGTGAAGCAGTTGGTGCAGATTGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004152 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016491 GO:0016627 GO:0016635 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0055086 GO:0055114 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

DHO_dh

Protein Analysis

177

Amino Acids

18.9

Weight (kDa)

5.93

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHO_dh	PF01180	7 - 159	5.3e-42	Dihydroorotate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23300
fragaria_vesca	FvH4_3g07800 FvH4_3g07800 FvH4_3g07800
malus_domestica	MD05G1301200.v1.1 MD10G1280100.v1.1
prunus_persica	Prupe.4G061300_v2.0.a1 Prupe.6G003700_v2.0.a1 Prupe.6G003700_v2.0.a1 Prupe.6G003700_v2.0.a1
pyrus_communis	pycom05g27900 pycom10g23390
rosa_chinensis	RchiOBHm_Chr5g0010781 RchiOBHm_Chr5g0050031 RchiOBHm_Chr5g0064321
rosa_laevigata	RLG00000031779
rosa_multiflora	Rmu_sc0000109.1_g000020
rosa_roxburghii	Rroxscaffold_1G00065600
rosa_rugosa	Rorug04G0424400 Rorug04G0424500 Rorug04G0452200 Rorug04G0452300 Rorug04G0452400 Rorug06G0421900
rosa_samantha	Rh5AG084600 Rh5BG340700 Rh5CG092100 Rh5DG079500 Rh5DG353400
rosa_wichuraiana	Rw0G000560 Rw0G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	31, 442
AccI	GTMKAC	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	261
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	2 cut(s)	305, 381
AfiI	CCNNNNNNNGG	3 cut(s)	169, 335, 454
AgsI	TTSAA	3 cut(s)	47, 137, 204
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	3 cut(s)	245, 386, 406
AluI	AGCT	3 cut(s)	245, 386, 406
Alw21I	GWGCWC	1 cut(s)	55
AlwNI	CAGNNNCTG	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	4 cut(s)	28, 83, 130, 431
AsuHPI	GGTGA	2 cut(s)	86, 371
AvaII	GGWCC	4 cut(s)	28, 83, 130, 431
BauI	CACGAG	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	2 cut(s)	479, 506
BciT130I	CCWGG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	147
BfuAI	ACCTGC	2 cut(s)	31, 442
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	4 cut(s)	28, 83, 130, 431
BmgT120I	GGNCC	4 cut(s)	28, 83, 130, 431
BmiI	GGNNCC	3 cut(s)	29, 84, 432
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 335, 454
Bse3DI	GCAATG	2 cut(s)	74, 92
BseBI	CCWGG	1 cut(s)	230
BseGI	GGATG	3 cut(s)	370, 441, 490
BseLI	CCNNNNNNNGG	3 cut(s)	169, 335, 454
BseMI	GCAATG	2 cut(s)	74, 92
BseRI	GAGGAG	2 cut(s)	78, 92
BseXI	GCAGC	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	55
BslFI	GGGAC	2 cut(s)	41, 444
BslI	CCNNNNNNNGG	3 cut(s)	169, 335, 454
BsmFI	GGGAC	2 cut(s)	41, 444
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp1407I	TGTACA	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	29, 84, 432
BspMAI	CTGCAG	1 cut(s)	151
BspMI	ACCTGC	2 cut(s)	31, 442
BsrDI	GCAATG	2 cut(s)	74, 92
BsrGI	TGTACA	1 cut(s)	303
BssSI	CACGAG	1 cut(s)	54
Bst2BI	CACGAG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	199
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstAUI	TGTACA	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	475
BstF5I	GGATG	3 cut(s)	370, 441, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 242, 515
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	370, 441, 490
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	2 cut(s)	361, 508
BveI	ACCTGC	2 cut(s)	31, 442
CaiI	CAGNNNCTG	1 cut(s)	215
Cfr13I	GGNCC	4 cut(s)	28, 83, 130, 431
CsiI	ACCWGGT	1 cut(s)	228
Csp6I	GTAC	2 cut(s)	304, 380
CviJI	RGCY	7 cut(s)	236, 245, 252, 265, 386, 406, 458
CviKI_1	RGCY	7 cut(s)	236, 245, 252, 265, 386, 406, 458
CviQI	GTAC	2 cut(s)	304, 380
DdeI	CTNAG	1 cut(s)	475
DraIII	CACNNNGTG	1 cut(s)	232
Eco47I	GGWCC	4 cut(s)	28, 83, 130, 431
Eco57I	CTGAAG	1 cut(s)	261
EcoO109I	RGGNCCY	4 cut(s)	28, 83, 130, 431
EcoRII	CCWGG	1 cut(s)	228
FaiI	YATR	3 cut(s)	185, 278, 411
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FaqI	GGGAC	2 cut(s)	41, 444
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	3 cut(s)	377, 428, 497
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	96
HinfI	GANTC	3 cut(s)	212, 325, 394
HphI	GGTGA	2 cut(s)	86, 371
Hpy166II	GTNNAC	2 cut(s)	224, 282
Hpy188I	TCNGA	2 cut(s)	241, 469
Hpy188III	TCNNGA	3 cut(s)	56, 113, 204
Hpy8I	GTNNAC	2 cut(s)	224, 282
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	4 cut(s)	67, 149, 518, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 242, 515
HpyF3I	CTNAG	1 cut(s)	475
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	9 cut(s)	26, 126, 215, 222, 231, 242, 372, 447, 461
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	355
MabI	ACCWGGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	56, 488
MboII	GAAGA	2 cut(s)	24, 149
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	3 cut(s)	105, 333, 461
MlyI	GAGTC	1 cut(s)	403
MnlI	CCTC	8 cut(s)	70, 73, 96, 99, 121, 309, 338, 355
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	3 cut(s)	23, 293, 332
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	152, 242, 515
NlaIV	GGNNCC	3 cut(s)	29, 84, 432
NmuCI	GTSAC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	212, 325
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
PpuMI	RGGWCCY	4 cut(s)	28, 83, 130, 431
Psp5II	RGGWCCY	4 cut(s)	28, 83, 130, 431
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	3 cut(s)	29, 84, 432
PspPI	GGNCC	4 cut(s)	28, 83, 130, 431
PspPPI	RGGWCCY	4 cut(s)	28, 83, 130, 431
PstI	CTGCAG	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	215
RsaI	GTAC	2 cut(s)	305, 381
RsaNI	GTAC	2 cut(s)	304, 380
SaqAI	TTAA	3 cut(s)	23, 293, 332
SatI	GCNGC	1 cut(s)	147
Sau96I	GGNCC	4 cut(s)	28, 83, 130, 431
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	9 cut(s)	33, 45, 52, 135, 231, 247, 388, 408, 436
SexAI	ACCWGGT	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	4 cut(s)	28, 83, 130, 431
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	3 cut(s)	105, 333, 461
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	273
TasI	AATT	3 cut(s)	105, 333, 461
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	212, 325
Tru1I	TTAA	3 cut(s)	23, 293, 332
Tru9I	TTAA	3 cut(s)	23, 293, 332
TscAI	CASTG	2 cut(s)	361, 508
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	2 cut(s)	361, 508
VpaK11BI	GGWCC	4 cut(s)	28, 83, 130, 431
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.