Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011028

Physical Location & Seq

Genomic Coordinates Forward (+)

29635722 .. 29638881

Gene Structure 3160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1827 bp

ATGTTGGTGAGGACATTGAGAAAGCTAAGGCGACGGGTTGATGTCAACACTGAAGTTGGGGTTGTGAGAGATATCCGTCTGAAAGAATTGCGGATATATACTGACTATGGACGTTGCAGTCGTCCATTATTCATTGTGGACAAACAGAGGCTTCTCATAAAGAAGAAAGATATTCATGCATTGCAGCAGAGGGAAAGCCCTGAAGATGCTGGTTGGCATGACCTTGTAGCAAAGGGATATATTGAATATATTGACACTGAAGAAGAGGAGACGACAATGATTTCCATGACAATTAATGATCGAATCCAAGCAAGACTCAATCCTGAGGAGGCATATTCGGACACTTATACTCATTGTGAAATCCACCCATCACTTATTTTGGGTGTTTGTGCTTCTATTATACCGTTTCCTGATCATAATCAGTCTCCACGTAATACATATCAATCTGCTATGGGAAAGCAAGCTATGGGGATTTATGTCACCAATTATCAGTTCCGAATGGATACATTGGCATATGTTTTATACTACCCTCAGAAACCTCTTGTCACCACAAGAGCCATGGAGCATCTCCACTTCAGGCAGCTTCCTGCTGGCATCAATGCTATTGTTGCCATCTCCTGTTATTCTGGTTATAACCAGGAAGATTCTGTCATTATGAATCAATCCTCTGTGGACCGTGGATTCTTCCGGTCACTATTCTTTCGATCCTATAGGGATGAGGAGAAAAAGATGGGGACCCTTGTCAAAGAGGATTTTGGGCGTCCTGACAGAGCAAATACTATGGGTATGCGACATGGTTCTTATGACAAATTGGATGATGATGGTCTTGCTCCTCCTGGAACTAGGGTTTCAGGTGAGGATGTCATCATAGGAAAGACTACACCCATGGCTCAGGATGAGGCTCCAGGGCAAACTACATCGCGTTACACACGGCGTGACCACAGCATAAGTTTGCGCCACAGTGAAACCGGCATAGTTGATCAGGTTCTACTGACGACCAATGCTGATGGGTTGCGGTTTGTTAAAGTACGGGTGAGGTCTGTCAGAATACCTCAAATTGGTGATAAATTTAGTAGCAGGCATGGACAGAAGGGGACGGTGGGTATGACTTATACCCAGGAAGACATGCCATGGACTGTGGAAGGGGTGACCCCCGATATAATCGTGAACCCGCATGCTATTCCTTCTCGGATGACAATTGGTCAGCTCATTGAGTGTATTATGGGGAAGGTTGCAGCTCATATGGGAAAGGAAGGAGATGCTACACCTTTTACAGATGTCACGGTGGACAATATCAGTAAAGCTCTTCACAGTTGTGGGTATCAAATGCGTGGATTCGAGACCATGTATAACGGTCACACGGGCAGGCGGCTCAGTGCTATGATATTCCTTGGCCCCACATACTACCAGAGACTGAAGCATATGGTCGACGATAAGATCCATTCACGTGGACGGGGTCCAGTGCAGATCCTCACAAGGCAGCCAGCTGAGGGACGATCTCGTGATGGTGGTCTACGCTTCGGGGAAATGGAACGAGATTGCATGATTGCCCATGGTGCTGCTCACTTTCTGAAAGAAAGATTGTTTGACCAGAGTGATGCATATAGGGTTCATGTCTGTGAGCGTTGTGGGTTAATAGCTATTGCAAATCTCAAGAAGAATTCGTTTGAGTGCAGGGGTTGCAAGAACAAAACCGACATTGTTCAGGTTTACATTCCTTATGCTTGCAAGCTGCTTTTCCAAGAGCTAATGTCGATGGCCATAGCGCCAAGAATGCTCACAAAGGACATCAAGCCTGCCAAAAACCAAAAGAAGAAAGGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030054 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

609

Amino Acids

69.11

Weight (kDa)

9.08

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_4	PF04566	2 - 47	3.1e-14	RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_5	PF04567	72 - 123	1.1e-16	RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6	PF00562	130 - 501	1.7e-142	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	503 - 594	3.5e-36	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21710
fragaria_vesca	FvH4_3g09270
malus_domestica	MD05G1313100.v1.1 MD10G1295300.v1.1
prunus_persica	Prupe.4G046700_v2.0.a1
pyrus_communis	pycom05g29100 pycom05g29110 pycom10g24710 pycom10g24720
rosa_chinensis	RchiOBHm_Chr5g0008301
rosa_laevigata	RLG00000031560
rosa_multiflora	Rmu_sc0021840.1_g000003
rosa_roxburghii	Rroxscaffold_1G00068160
rosa_rugosa	Rorug04G0434800
rosa_samantha	Rh5AG063600 Rh5BG060100 Rh5CG070400 Rh5CG070500 Rh5DG059600
rosa_wichuraiana	Rw5G005730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
AasI	GACNNNNNNGTC	1 cut(s)	117
AccI	GTMKAC	2 cut(s)	1428, 1513
AccII	CGCG	1 cut(s)	922
AciI	CCGC	4 cut(s)	91, 1015, 1172, 1369
AclWI	GGATC	3 cut(s)	699, 1432, 1462
AcoI	YGGCCR	1 cut(s)	1758
AcsI	RAATTY	2 cut(s)	1067, 1660
AcuI	CTGAAG	5 cut(s)	72, 222, 279, 559, 1436
AcvI	CACGTG	1 cut(s)	1448
AcyI	GRCGYC	1 cut(s)	760
AdeI	CACNNNGTG	1 cut(s)	935
AfaI	GTAC	1 cut(s)	1029
AfiI	CCNNNNNNNGG	2 cut(s)	1058, 1490
AgsI	TTSAA	1 cut(s)	245
AhdI	GACNNNNNGTC	1 cut(s)	1200
AjnI	CCWGG	4 cut(s)	636, 835, 904, 1116
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AleI	CACNNNNGTG	1 cut(s)	1314
Alw26I	GTCTC	4 cut(s)	263, 429, 1334, 1405
AlwI	GGATC	3 cut(s)	699, 1432, 1462
AlwNI	CAGNNNCTG	1 cut(s)	1414
AoxI	GGCC	2 cut(s)	1393, 1758
ApeKI	GCWGC	6 cut(s)	184, 580, 1235, 1480, 1559, 1732
ApoI	RAATTY	2 cut(s)	1067, 1660
AseI	ATTAAT	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	957, 1768
AspS9I	GGNCC	4 cut(s)	673, 735, 1394, 1457
AsuHPI	GGTGA	7 cut(s)	19, 472, 538, 866, 1045, 1073, 1159
AvaII	GGWCC	3 cut(s)	673, 735, 1457
AxyI	CCTNAGG	1 cut(s)	324
BalI	TGGCCA	1 cut(s)	1760
BauI	CACGAG	1 cut(s)	1500
BbrPI	CACGTG	1 cut(s)	1448
BbsI	GAAGAC	1 cut(s)	1128
BbvCI	CCTCAGC	1 cut(s)	1488
BbvI	GCAGC	6 cut(s)	196, 592, 1247, 1492, 1546, 1719
BccI	CCATC	7 cut(s)	376, 620, 724, 815, 1001, 1499, 1750
BceAI	ACGGC	1 cut(s)	947
BciT130I	CCWGG	4 cut(s)	638, 837, 906, 1118
BciVI	GTATCC	1 cut(s)	496
BclI	TGATCA	2 cut(s)	412, 979
BcoDI	GTCTC	4 cut(s)	263, 429, 1334, 1405
BfaI	CTAG	1 cut(s)	843
BfmI	CTRYAG	1 cut(s)	709
BfoI	RGCGCY	1 cut(s)	1769
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	7 cut(s)	185, 581, 1236, 1370, 1481, 1560, 1733
BlsI	GCNGC	7 cut(s)	186, 582, 1237, 1371, 1482, 1561, 1734
Bme1390I	CCNGG	4 cut(s)	638, 837, 906, 1118
Bme18I	GGWCC	3 cut(s)	673, 735, 1457
BmeRI	GACNNNNNGTC	1 cut(s)	1200
BmgT120I	GGNCC	4 cut(s)	673, 735, 1394, 1457
BmiI	GGNNCC	6 cut(s)	736, 737, 903, 1396, 1458, 1822
BmrFI	CCNGG	4 cut(s)	638, 837, 906, 1118
BmsI	GCATC	5 cut(s)	196, 574, 603, 1249, 1588
BoxI	GACNNNNGTC	1 cut(s)	740
BpiI	GAAGAC	1 cut(s)	1128
BpmI	CTGGAG	1 cut(s)	888
Bpu10I	CCTNAGC	3 cut(s)	26, 891, 1488
BpuEI	CTTGAG	1 cut(s)	1637
BsaAI	YACGTR	2 cut(s)	431, 1448
BsaBI	GATNNNNATC	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	760
BsaI	GGTCTC	1 cut(s)	1334
BsaJI	CCNNGG	8 cut(s)	558, 676, 885, 905, 1116, 1130, 1390, 1552
BsaWI	WCCGGW	1 cut(s)	687
Bsc4I	CCNNNNNNNGG	2 cut(s)	1058, 1490
Bse118I	RCCGGY	1 cut(s)	968
Bse1I	ACTGG	1 cut(s)	1460
Bse21I	CCTNAGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	179
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	4 cut(s)	638, 837, 906, 1118
BseDI	CCNNGG	8 cut(s)	558, 676, 885, 905, 1116, 1130, 1390, 1552
BseGI	GGATG	5 cut(s)	721, 820, 865, 901, 1197
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	1058, 1490
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	5 cut(s)	315, 545, 905, 1387, 1479
BseNI	ACTGG	1 cut(s)	1460
BseRI	GAGGAG	4 cut(s)	281, 341, 734, 822
BseXI	GCAGC	6 cut(s)	196, 592, 1247, 1492, 1546, 1719
BsgI	GTGCAG	2 cut(s)	1484, 1693
Bsh1236I	CGCG	1 cut(s)	922
BshFI	GGCC	2 cut(s)	1395, 1760
BsiSI	CCGG	2 cut(s)	688, 969
BslFI	GGGAC	3 cut(s)	748, 1108, 1506
BslI	CCNNNNNNNGG	2 cut(s)	1058, 1490
BsmAI	GTCTC	4 cut(s)	263, 429, 1334, 1405
BsmBI	CGTCTC	1 cut(s)	263
BsmFI	GGGAC	3 cut(s)	748, 1108, 1506
BsmI	GAATGC	1 cut(s)	1779
BsnI	GGCC	2 cut(s)	1395, 1760
Bso31I	GGTCTC	1 cut(s)	1334
Bsp143I	GATC	7 cut(s)	298, 412, 704, 979, 1437, 1467, 1496
Bsp19I	CCATGG	4 cut(s)	558, 885, 1130, 1552
BspACI	CCGC	4 cut(s)	91, 1015, 1172, 1369
BspANI	GGCC	2 cut(s)	1395, 1760
BspCNI	CTCAG	5 cut(s)	316, 544, 904, 1386, 1480
BspFNI	CGCG	1 cut(s)	922
BspLI	GGNNCC	6 cut(s)	736, 737, 903, 1396, 1458, 1822
BspPI	GGATC	3 cut(s)	699, 1432, 1462
BspQI	GCTCTTC	1 cut(s)	1311
BspTNI	GGTCTC	1 cut(s)	1334
BsrDI	GCAATG	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	968
BsrI	ACTGG	1 cut(s)	1460
BssAI	RCCGGY	1 cut(s)	968
BssECI	CCNNGG	8 cut(s)	558, 676, 885, 905, 1116, 1130, 1390, 1552
BssMI	GATC	7 cut(s)	298, 412, 704, 979, 1437, 1467, 1496
BssNI	GRCGYC	1 cut(s)	760
BssSI	CACGAG	1 cut(s)	1500
BssT1I	CCWWGG	5 cut(s)	558, 885, 1130, 1390, 1552
Bst2BI	CACGAG	1 cut(s)	1500
Bst2UI	CCWGG	4 cut(s)	638, 837, 906, 1118
Bst4CI	ACNGT	8 cut(s)	405, 677, 962, 1099, 1138, 1285, 1313, 1355
Bst6I	CTCTTC	2 cut(s)	258, 1311
BstACI	GRCGYC	1 cut(s)	760
BstAPI	GCANNNNNTGC	1 cut(s)	1680
BstBAI	YACGTR	2 cut(s)	431, 1448
BstC8I	GCNNGC	9 cut(s)	462, 592, 1079, 1176, 1367, 1485, 1726, 1730, 1797
BstDEI	CTNAG	6 cut(s)	26, 324, 531, 891, 1373, 1488
BstDSI	CCRYGG	5 cut(s)	558, 676, 885, 1130, 1552
BstEII	GGTNACC	1 cut(s)	1147
BstF5I	GGATG	5 cut(s)	721, 820, 865, 901, 1197
BstFNI	CGCG	1 cut(s)	922
BstH2I	RGCGCY	1 cut(s)	1769
BstHHI	GCGC	2 cut(s)	957, 1768
BstKTI	GATC	7 cut(s)	301, 415, 707, 982, 1440, 1470, 1499
BstMAI	GTCTC	4 cut(s)	263, 429, 1334, 1405
BstMBI	GATC	7 cut(s)	298, 412, 704, 979, 1437, 1467, 1496
BstMWI	GCNNNNNNNGC	4 cut(s)	608, 1556, 1680, 1774
BstNI	CCWGG	4 cut(s)	638, 837, 906, 1118
BstNSI	RCATGY	2 cut(s)	1129, 1178
BstPAI	GACNNNNGTC	1 cut(s)	740
BstPI	GGTNACC	1 cut(s)	1147
BstSCI	CCNGG	4 cut(s)	636, 835, 904, 1116
BstSFI	CTRYAG	1 cut(s)	709
BstUI	CGCG	1 cut(s)	922
BstV1I	GCAGC	6 cut(s)	196, 592, 1247, 1492, 1546, 1719
BstV2I	GAAGAC	1 cut(s)	1128
BstX2I	RGATCY	2 cut(s)	1437, 1467
BstXI	CCANNNNNNTGG	1 cut(s)	1448
BstYI	RGATCY	2 cut(s)	1437, 1467
Bsu36I	CCTNAGG	1 cut(s)	324
BsuI	GTATCC	1 cut(s)	496
BsuRI	GGCC	2 cut(s)	1395, 1760
BtgI	CCRYGG	5 cut(s)	558, 676, 885, 1130, 1552
BtgZI	GCGATG	1 cut(s)	903
BtsCI	GGATG	5 cut(s)	721, 820, 865, 901, 1197
BtsIMutI	CAGTG	5 cut(s)	48, 255, 967, 1381, 1467
Cac8I	GCNNGC	9 cut(s)	462, 592, 1079, 1176, 1367, 1485, 1726, 1730, 1797
CaiI	CAGNNNCTG	1 cut(s)	1414
CfoI	GCGC	2 cut(s)	957, 1768
Cfr10I	RCCGGY	1 cut(s)	968
Cfr13I	GGNCC	4 cut(s)	673, 735, 1394, 1457
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	1 cut(s)	1028
CviQI	GTAC	1 cut(s)	1028
DdeI	CTNAG	6 cut(s)	26, 324, 531, 891, 1373, 1488
DpnI	GATC	7 cut(s)	300, 414, 706, 981, 1439, 1469, 1498
DpnII	GATC	7 cut(s)	298, 412, 704, 979, 1437, 1467, 1496
DraIII	CACNNNGTG	1 cut(s)	935
DrdI	GACNNNNNNGTC	1 cut(s)	117
DriI	GACNNNNNGTC	1 cut(s)	1200
DseDI	GACNNNNNNGTC	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	1758
Eam1104I	CTCTTC	2 cut(s)	258, 1311
Eam1105I	GACNNNNNGTC	1 cut(s)	1200
EarI	CTCTTC	2 cut(s)	258, 1311
Eco130I	CCWWGG	5 cut(s)	558, 885, 1130, 1390, 1552
Eco31I	GGTCTC	1 cut(s)	1334
Eco32I	GATATC	1 cut(s)	73
Eco47I	GGWCC	3 cut(s)	673, 735, 1457
Eco57I	CTGAAG	5 cut(s)	72, 222, 279, 559, 1436
Eco72I	CACGTG	1 cut(s)	1448
Eco81I	CCTNAGG	1 cut(s)	324
Eco91I	GGTNACC	1 cut(s)	1147
EcoO109I	RGGNCCY	1 cut(s)	735
EcoO65I	GGTNACC	1 cut(s)	1147
EcoRI	GAATTC	1 cut(s)	1660
EcoRII	CCWGG	4 cut(s)	636, 835, 904, 1116
EcoRV	GATATC	1 cut(s)	73
EcoT14I	CCWWGG	5 cut(s)	558, 885, 1130, 1390, 1552
EcoT22I	ATGCAT	2 cut(s)	181, 1603
ErhI	CCWWGG	5 cut(s)	558, 885, 1130, 1390, 1552
Esp3I	CGTCTC	1 cut(s)	263
FaqI	GGGAC	3 cut(s)	748, 1108, 1506
FauI	CCCGC	1 cut(s)	1179
FauNDI	CATATG	3 cut(s)	514, 1242, 1422
FbaI	TGATCA	2 cut(s)	412, 979
FblI	GTMKAC	2 cut(s)	1428, 1513
Fnu4HI	GCNGC	7 cut(s)	185, 581, 1236, 1370, 1481, 1560, 1733
FokI	GGATG	5 cut(s)	728, 827, 872, 908, 1204
Fsp4HI	GCNGC	7 cut(s)	185, 581, 1236, 1370, 1481, 1560, 1733
FspBI	CTAG	1 cut(s)	843
GlaI	GCGC	2 cut(s)	956, 1767
GluI	GCNGC	7 cut(s)	185, 581, 1236, 1370, 1481, 1560, 1733
GsuI	CTGGAG	1 cut(s)	888
HaeII	RGCGCY	1 cut(s)	1769
HaeIII	GGCC	2 cut(s)	1395, 1760
HapII	CCGG	2 cut(s)	688, 969
HgaI	GACGC	1 cut(s)	749
HhaI	GCGC	2 cut(s)	957, 1768
Hin1I	GRCGYC	1 cut(s)	760
Hin6I	GCGC	2 cut(s)	955, 1766
HinP1I	GCGC	2 cut(s)	955, 1766
HincII	GTYRAC	2 cut(s)	46, 1429
HindII	GTYRAC	2 cut(s)	46, 1429
HinfI	GANTC	6 cut(s)	303, 315, 644, 658, 681, 1335
HpaII	CCGG	2 cut(s)	688, 969
HphI	GGTGA	7 cut(s)	19, 472, 538, 866, 1045, 1073, 1159
Hpy166II	GTNNAC	9 cut(s)	46, 139, 673, 1168, 1288, 1429, 1451, 1514, 1711
Hpy188I	TCNGA	7 cut(s)	81, 340, 497, 534, 1046, 1191, 1572
Hpy188III	TCNNGA	8 cut(s)	323, 410, 764, 893, 1165, 1339, 1502, 1654
Hpy8I	GTNNAC	9 cut(s)	46, 139, 673, 1168, 1288, 1429, 1451, 1514, 1711
Hpy99I	CGWCG	2 cut(s)	36, 1433
HpyAV	CCTTC	5 cut(s)	1084, 1136, 1194, 1222, 1247
HpyCH4III	ACNGT	8 cut(s)	405, 677, 962, 1099, 1138, 1285, 1313, 1355
HpyCH4IV	ACGT	3 cut(s)	112, 430, 1447
HpyF10VI	GCNNNNNNNGC	4 cut(s)	608, 1556, 1680, 1774
HpyF3I	CTNAG	6 cut(s)	26, 324, 531, 891, 1373, 1488
HpySE526I	ACGT	3 cut(s)	112, 430, 1447
Hsp92I	GRCGYC	1 cut(s)	760
HspAI	GCGC	2 cut(s)	955, 1766
KflI	GGGWCCC	1 cut(s)	735
Ksp22I	TGATCA	2 cut(s)	412, 979
Kzo9I	GATC	7 cut(s)	298, 412, 704, 979, 1437, 1467, 1496
LguI	GCTCTTC	1 cut(s)	1311
LmnI	GCTCC	4 cut(s)	562, 835, 907, 1820
Lsp1109I	GCAGC	6 cut(s)	196, 592, 1247, 1492, 1546, 1719
LweI	GCATC	5 cut(s)	196, 574, 603, 1249, 1588
MaeI	CTAG	1 cut(s)	843
MaeII	ACGT	3 cut(s)	112, 430, 1447
MaeIII	GTNAC	8 cut(s)	478, 544, 690, 923, 935, 1147, 1279, 1355
MalI	GATC	7 cut(s)	300, 414, 706, 981, 1439, 1469, 1498
MboI	GATC	7 cut(s)	298, 412, 704, 979, 1437, 1467, 1496
MfeI	CAATTG	1 cut(s)	1197
MflI	RGATCY	2 cut(s)	1437, 1467
MlsI	TGGCCA	1 cut(s)	1760
MluCI	AATT	8 cut(s)	86, 291, 484, 809, 1056, 1067, 1197, 1660
MluNI	TGGCCA	1 cut(s)	1760
MlyI	GAGTC	1 cut(s)	309
Mox20I	TGGCCA	1 cut(s)	1760
Mph1103I	ATGCAT	2 cut(s)	181, 1603
MscI	TGGCCA	1 cut(s)	1760
MseI	TTAA	3 cut(s)	294, 1023, 1634
MslI	CAYNNNNRTG	3 cut(s)	1314, 1446, 1617
Msp20I	TGGCCA	1 cut(s)	1760
MspA1I	CMGCKG	1 cut(s)	1487
MspI	CCGG	2 cut(s)	688, 969
MspR9I	CCNGG	4 cut(s)	638, 837, 906, 1118
MunI	CAATTG	1 cut(s)	1197
Mva1269I	GAATGC	1 cut(s)	1779
MvaI	CCWGG	4 cut(s)	638, 837, 906, 1118
MvnI	CGCG	1 cut(s)	922
MwoI	GCNNNNNNNGC	4 cut(s)	608, 1556, 1680, 1774
NcoI	CCATGG	4 cut(s)	558, 885, 1130, 1552
NdeI	CATATG	3 cut(s)	514, 1242, 1422
NdeII	GATC	7 cut(s)	298, 412, 704, 979, 1437, 1467, 1496
NlaIV	GGNNCC	6 cut(s)	736, 737, 903, 1396, 1458, 1822
NmuCI	GTSAC	7 cut(s)	478, 544, 690, 935, 1147, 1279, 1355
NsiI	ATGCAT	2 cut(s)	181, 1603
NspI	RCATGY	2 cut(s)	1129, 1178
OliI	CACNNNNGTG	1 cut(s)	1314
PaeI	GCATGC	1 cut(s)	1178
PciSI	GCTCTTC	1 cut(s)	1311
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PctI	GAATGC	1 cut(s)	1779
PfeI	GAWTC	5 cut(s)	303, 644, 658, 681, 1335
PflFI	GACNNNGTC	1 cut(s)	1455
PfoI	TCCNGGA	1 cut(s)	835
PkrI	GCNGC	7 cut(s)	186, 582, 1237, 1371, 1482, 1561, 1734
PleI	GAGTC	1 cut(s)	309
PmaCI	CACGTG	1 cut(s)	1448
PmlI	CACGTG	1 cut(s)	1448
PpsI	GAGTC	1 cut(s)	309
Ppu21I	YACGTR	2 cut(s)	431, 1448
PpuMI	RGGWCCY	1 cut(s)	735
PshAI	GACNNNNGTC	1 cut(s)	740
PshBI	ATTAAT	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	633
Psp5II	RGGWCCY	1 cut(s)	735
Psp6I	CCWGG	4 cut(s)	636, 835, 904, 1116
PspCI	CACGTG	1 cut(s)	1448
PspEI	GGTNACC	1 cut(s)	1147
PspGI	CCWGG	4 cut(s)	636, 835, 904, 1116
PspN4I	GGNNCC	6 cut(s)	736, 737, 903, 1396, 1458, 1822
PspPI	GGNCC	4 cut(s)	673, 735, 1394, 1457
PspPPI	RGGWCCY	1 cut(s)	735
PstNI	CAGNNNCTG	1 cut(s)	1414
PsuI	RGATCY	2 cut(s)	1437, 1467
PsyI	GACNNNGTC	1 cut(s)	1455
PvuII	CAGCTG	1 cut(s)	1487
RsaI	GTAC	1 cut(s)	1029
RsaNI	GTAC	1 cut(s)	1028
RseI	CAYNNNNRTG	3 cut(s)	1314, 1446, 1617
SalI	GTCGAC	1 cut(s)	1427
SapI	GCTCTTC	1 cut(s)	1311
SaqAI	TTAA	3 cut(s)	294, 1023, 1634
SatI	GCNGC	7 cut(s)	185, 581, 1236, 1370, 1481, 1560, 1733
Sau3AI	GATC	7 cut(s)	298, 412, 704, 979, 1437, 1467, 1496
Sau96I	GGNCC	4 cut(s)	673, 735, 1394, 1457
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	4 cut(s)	638, 837, 906, 1118
SfaNI	GCATC	5 cut(s)	196, 574, 603, 1249, 1588
SfcI	CTRYAG	1 cut(s)	709
SinI	GGWCC	3 cut(s)	673, 735, 1457
SmiMI	CAYNNNNRTG	3 cut(s)	1314, 1446, 1617
SmlI	CTYRAG	1 cut(s)	1652
SmoI	CTYRAG	1 cut(s)	1652
SphI	GCATGC	1 cut(s)	1178
Sse9I	AATT	8 cut(s)	86, 291, 484, 809, 1056, 1067, 1197, 1660
SsiI	CCGC	4 cut(s)	91, 1015, 1172, 1369
SspMI	CTAG	1 cut(s)	843
StyD4I	CCNGG	4 cut(s)	636, 835, 904, 1116
StyI	CCWWGG	5 cut(s)	558, 885, 1130, 1390, 1552
TaaI	ACNGT	8 cut(s)	405, 677, 962, 1099, 1138, 1285, 1313, 1355
TaiI	ACGT	3 cut(s)	115, 433, 1450
TaqI	TCGA	5 cut(s)	301, 703, 1338, 1428, 1754
TasI	AATT	8 cut(s)	86, 291, 484, 809, 1056, 1067, 1197, 1660
TauI	GCSGC	1 cut(s)	1372
TfiI	GAWTC	5 cut(s)	303, 644, 658, 681, 1335
Tru1I	TTAA	3 cut(s)	294, 1023, 1634
Tru9I	TTAA	3 cut(s)	294, 1023, 1634
TscAI	CASTG	5 cut(s)	55, 262, 967, 1381, 1467
TseFI	GTSAC	7 cut(s)	478, 544, 690, 935, 1147, 1279, 1355
TseI	GCWGC	6 cut(s)	184, 580, 1235, 1480, 1559, 1732
Tsp45I	GTSAC	7 cut(s)	478, 544, 690, 935, 1147, 1279, 1355
TspDTI	ATGAA	4 cut(s)	121, 164, 671, 1601
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	5 cut(s)	55, 262, 967, 1381, 1467
Tth111I	GACNNNGTC	1 cut(s)	1455
VpaK11BI	GGWCC	3 cut(s)	673, 735, 1457
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	2 cut(s)	1067, 1660
XceI	RCATGY	2 cut(s)	1129, 1178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XmiI	GTMKAC	2 cut(s)	1428, 1513
XspI	CTAG	1 cut(s)	843
Zsp2I	ATGCAT	2 cut(s)	181, 1603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.