pycom05g30030
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0001349
Physical Location & Seq
Forward (+)
30289769 .. 30291694
1926 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g30030.2

Sequence Viewer

Length: 954 bp
ATGCCTGCTGTTGGTATCCCCGCCGGCGGGAACGGCAAGGCCTACGTCGGAAATCTCACTCCTTATGTTCTTGTCACCTGTGTCGTCGCCGCCATGGGTGGTCTGATTTTTGGCTACGATATCGGCATTTCCGGTGGGGTAACGTCCATGGACTCGTTCCTGAAGAAGTTCTTTCCGTCGGTGTACCACAAGAAGGAGAAGGACAAGACGACGAACCAGTACTGTCAGTATGATAGTCAAACGTTGACCATGTTCACATCGTCGCTGTACTTGGCTGCTCTCATATCCTCGATTGTGGCCGCCACCGTGACGCGTAAGTTTGGCCGGAAACTTTCCATGTTGTTCGGCGGTCTGCTGTTCTGCGCCGGTGCTATCATCAATGGCGCTGCCAAAGCTGTCTGGATGTTGATTCTCGGCCGTATGTTGCTCGGTTTCGGCATCGGATTCTCCAATCAGTCGGTGCCACTCTACTTGTCTGAGATGGCGCCCTACAGATTCAGGGGAGCTCTTAACATTGGCTTCCAGCTATCAATCACAGTTGGTATTCTTGTGGCCAATGTGCTGAACTACTTCTTTGCCAAGATAAAGGGTGGCTGGGGATGGAGGTTGAGCTTGGGCGGCGCGATGGTCCCCGCCCTTATCATCACAATCGGCTCACTTGTCCTGCCAGACACTCCCAACTCCATGATTGAGCGCGGTCAACATGACGAAGCCAAGGCCAAGCTCCAACGCATTCGCGGCGTTGATGATGTTAGGGAGGAATTCAGTGACCTGGTAGCAGCTAGTGAAGCGGCGAACAAAATCAAGGACCCGTGGAGAAACCTGCTGAGGAAGAAGTACAGACCTCACCTCTGCGTGGCAATCGTCATTCCCTTCTTTCAGCAGCTCACTGGCATCAATGTGATCGATGTTCTACGCGCCGGTTTTGTTCAACACAATCGGGTTTGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

318

Amino Acids

34.59

Weight (kDa)

9.76

Isoelectric Point (pI)

25.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 831
AccB1I GGYRCC 2 cut(s) 460, 484
AccII CGCG 5 cut(s) 313, 623, 696, 738, 918
AclI AACGTT 1 cut(s) 242
AcoI YGGCCR 4 cut(s) 297, 322, 415, 552
AcsI RAATTY 1 cut(s) 761
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 485
AfaI GTAC 4 cut(s) 185, 221, 269, 839
AfiI CCNNNNNNNGG 5 cut(s) 11, 26, 27, 193, 856
AflIII ACRYGT 1 cut(s) 311
AgsI TTSAA 1 cut(s) 932
AjnI CCWGG 1 cut(s) 771
AluBI AGCT 8 cut(s) 395, 506, 526, 612, 724, 782, 886, 951
AluI AGCT 8 cut(s) 395, 506, 526, 612, 724, 782, 886, 951
Alw21I GWGCWC 1 cut(s) 508
AoxI GGCC 6 cut(s) 39, 297, 322, 415, 552, 717
ApeKI GCWGC 4 cut(s) 275, 386, 779, 883
ApoI RAATTY 1 cut(s) 761
Asp700I GAANNNNTTC 2 cut(s) 167, 569
AspLEI GCGC 6 cut(s) 365, 386, 487, 623, 696, 920
AspS9I GGNCC 2 cut(s) 628, 808
AsuHPI GGTGA 2 cut(s) 67, 839
AvaII GGWCC 2 cut(s) 628, 808
BalI TGGCCA 1 cut(s) 554
BanI GGYRCC 2 cut(s) 460, 484
BanII GRGCYC 1 cut(s) 508
Bbv12I GWGCWC 1 cut(s) 508
BbvCI CCTCAGC 1 cut(s) 827
BbvI GCAGC 4 cut(s) 262, 373, 791, 895
BccI CCATC 3 cut(s) 475, 594, 619
BceAI ACGGC 2 cut(s) 49, 402
BciT130I CCWGG 1 cut(s) 773
BciVI GTATCC 1 cut(s) 26
BfaI CTAG 1 cut(s) 783
BfmI CTRYAG 1 cut(s) 490
BfoI RGCGCY 2 cut(s) 387, 488
BfuAI ACCTGC 1 cut(s) 831
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 9 cut(s) 90, 276, 300, 387, 619, 739, 780, 792, 884
BlsI GCNGC 9 cut(s) 91, 277, 301, 388, 620, 740, 781, 793, 885
BmcAI AGTACT 1 cut(s) 221
Bme1390I CCNGG 1 cut(s) 773
Bme18I GGWCC 2 cut(s) 628, 808
BmgT120I GGNCC 2 cut(s) 628, 808
BmiI GGNNCC 4 cut(s) 462, 486, 630, 810
BmrFI CCNGG 1 cut(s) 773
BmsI GCATC 2 cut(s) 447, 903
Bpu10I CCTNAGC 1 cut(s) 827
Bsa29I ATCGAT 1 cut(s) 906
BsaHI GRCGYC 1 cut(s) 485
BsaJI CCNNGG 4 cut(s) 93, 147, 714, 812
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 26, 27, 193, 856
Bse118I RCCGGY 3 cut(s) 23, 365, 920
Bse1I ACTGG 2 cut(s) 217, 895
BseBI CCWGG 1 cut(s) 773
BseCI ATCGAT 1 cut(s) 906
BseDI CCNNGG 4 cut(s) 93, 147, 714, 812
BseGI GGATG 2 cut(s) 408, 605
BseLI CCNNNNNNNGG 5 cut(s) 11, 26, 27, 193, 856
BseMII CTCAG 2 cut(s) 468, 818
BseNI ACTGG 2 cut(s) 217, 895
BseX3I CGGCCG 1 cut(s) 415
BseXI GCAGC 4 cut(s) 262, 373, 791, 895
BseYI CCCAGC 1 cut(s) 594
Bsh1236I CGCG 5 cut(s) 313, 623, 696, 738, 918
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 6 cut(s) 41, 299, 324, 417, 554, 719
BshNI GGYRCC 2 cut(s) 460, 484
BshVI ATCGAT 1 cut(s) 906
BsiEI CGRYCG 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 508
BsiSI CCGG 5 cut(s) 24, 132, 325, 366, 921
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 5 cut(s) 11, 26, 27, 193, 856
BsmFI GGGAC 1 cut(s) 614
BsmI GAATGC 1 cut(s) 732
BsnI GGCC 6 cut(s) 41, 299, 324, 417, 554, 719
Bsp1286I GDGCHC 1 cut(s) 508
Bsp143I GATC 1 cut(s) 903
Bsp19I CCATGG 2 cut(s) 93, 147
BspANI GGCC 6 cut(s) 41, 299, 324, 417, 554, 719
BspCNI CTCAG 2 cut(s) 469, 819
BspDI ATCGAT 1 cut(s) 906
BspFNI CGCG 5 cut(s) 313, 623, 696, 738, 918
BspLI GGNNCC 4 cut(s) 462, 486, 630, 810
BspMI ACCTGC 1 cut(s) 831
BspT107I GGYRCC 2 cut(s) 460, 484
BsrFI RCCGGY 3 cut(s) 23, 365, 920
BsrI ACTGG 2 cut(s) 217, 895
BssAI RCCGGY 3 cut(s) 23, 365, 920
BssECI CCNNGG 4 cut(s) 93, 147, 714, 812
BssMI GATC 1 cut(s) 903
BssNI GRCGYC 1 cut(s) 485
BssT1I CCWWGG 3 cut(s) 93, 147, 714
Bst2UI CCWGG 1 cut(s) 773
Bst4CI ACNGT 3 cut(s) 224, 307, 538
BstACI GRCGYC 1 cut(s) 485
BstC8I GCNNGC 2 cut(s) 6, 25
BstDEI CTNAG 2 cut(s) 477, 827
BstDSI CCRYGG 3 cut(s) 93, 147, 812
BstF5I GGATG 2 cut(s) 408, 605
BstFNI CGCG 5 cut(s) 313, 623, 696, 738, 918
BstH2I RGCGCY 2 cut(s) 387, 488
BstHHI GCGC 6 cut(s) 365, 386, 487, 623, 696, 920
BstKTI GATC 1 cut(s) 906
BstMBI GATC 1 cut(s) 903
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 5 cut(s) 33, 392, 618, 738, 788
BstNI CCWGG 1 cut(s) 773
BstSCI CCNGG 1 cut(s) 771
BstSFI CTRYAG 1 cut(s) 490
BstUI CGCG 5 cut(s) 313, 623, 696, 738, 918
BstV1I GCAGC 4 cut(s) 262, 373, 791, 895
BstZI CGGCCG 1 cut(s) 415
Bsu15I ATCGAT 1 cut(s) 906
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 6 cut(s) 41, 299, 324, 417, 554, 719
BsuTUI ATCGAT 1 cut(s) 906
BtgI CCRYGG 3 cut(s) 93, 147, 812
BtgZI GCGATG 1 cut(s) 638
BtsCI GGATG 2 cut(s) 408, 605
BtsIMutI CAGTG 2 cut(s) 772, 888
BveI ACCTGC 1 cut(s) 831
Cac8I GCNNGC 2 cut(s) 6, 25
CfoI GCGC 6 cut(s) 365, 386, 487, 623, 696, 920
Cfr10I RCCGGY 3 cut(s) 23, 365, 920
Cfr13I GGNCC 2 cut(s) 628, 808
ClaI ATCGAT 1 cut(s) 906
CseI GACGC 1 cut(s) 319
CsiI ACCWGGT 1 cut(s) 771
Csp6I GTAC 4 cut(s) 184, 220, 268, 838
CspCI CAANNNNNGTGG 2 cut(s) 453, 488
CviAII CATG 6 cut(s) 94, 148, 250, 337, 685, 704
CviQI GTAC 4 cut(s) 184, 220, 268, 838
DdeI CTNAG 2 cut(s) 477, 827
DinI GGCGCC 1 cut(s) 486
DpnI GATC 1 cut(s) 905
DpnII GATC 1 cut(s) 903
EaeI YGGCCR 4 cut(s) 297, 322, 415, 552
EagI CGGCCG 1 cut(s) 415
Ecl136II GAGCTC 1 cut(s) 506
EclXI CGGCCG 1 cut(s) 415
Eco130I CCWWGG 3 cut(s) 93, 147, 714
Eco147I AGGCCT 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 508
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 2 cut(s) 628, 808
Eco52I CGGCCG 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 506
Eco57I CTGAAG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 506
EcoO109I RGGNCCY 1 cut(s) 808
EcoRI GAATTC 1 cut(s) 761
EcoRII CCWGG 1 cut(s) 771
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 3 cut(s) 93, 147, 714
EcoT38I GRGCYC 1 cut(s) 508
EgeI GGCGCC 1 cut(s) 486
EheI GGCGCC 1 cut(s) 486
ErhI CCWWGG 3 cut(s) 93, 147, 714
FaeI CATG 6 cut(s) 97, 151, 253, 340, 688, 707
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FaqI GGGAC 1 cut(s) 614
FatI CATG 6 cut(s) 93, 147, 249, 336, 684, 703
FauI CCCGC 3 cut(s) 20, 28, 640
Fnu4HI GCNGC 9 cut(s) 90, 276, 300, 387, 619, 739, 780, 792, 884
FokI GGATG 2 cut(s) 415, 612
FriOI GRGCYC 1 cut(s) 508
Fsp4HI GCNGC 9 cut(s) 90, 276, 300, 387, 619, 739, 780, 792, 884
FspBI CTAG 1 cut(s) 783
GlaI GCGC 6 cut(s) 364, 385, 486, 622, 695, 919
GluI GCNGC 9 cut(s) 90, 276, 300, 387, 619, 739, 780, 792, 884
GsaI CCCAGC 1 cut(s) 598
HaeII RGCGCY 2 cut(s) 387, 488
HaeIII GGCC 6 cut(s) 41, 299, 324, 417, 554, 719
HapII CCGG 5 cut(s) 24, 132, 325, 366, 921
HgaI GACGC 1 cut(s) 319
HhaI GCGC 6 cut(s) 365, 386, 487, 623, 696, 920
Hin1I GRCGYC 1 cut(s) 485
Hin1II CATG 6 cut(s) 97, 151, 253, 340, 688, 707
Hin6I GCGC 6 cut(s) 363, 384, 485, 621, 694, 918
HinP1I GCGC 6 cut(s) 363, 384, 485, 621, 694, 918
HincII GTYRAC 2 cut(s) 246, 701
HindII GTYRAC 2 cut(s) 246, 701
HinfI GANTC 4 cut(s) 152, 409, 444, 495
HpaII CCGG 5 cut(s) 24, 132, 325, 366, 921
HphI GGTGA 2 cut(s) 67, 839
Hpy166II GTNNAC 4 cut(s) 184, 246, 255, 701
Hpy188I TCNGA 4 cut(s) 50, 105, 443, 478
Hpy188III TCNNGA 2 cut(s) 160, 400
Hpy8I GTNNAC 4 cut(s) 184, 246, 255, 701
Hpy99I CGWCG 5 cut(s) 50, 89, 181, 214, 265
HpyAV CCTTC 3 cut(s) 187, 193, 883
HpyCH4III ACNGT 3 cut(s) 224, 307, 538
HpyCH4IV ACGT 3 cut(s) 45, 143, 242
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 392, 618, 738, 788
HpyF3I CTNAG 2 cut(s) 477, 827
HpySE526I ACGT 3 cut(s) 45, 143, 242
Hsp92I GRCGYC 1 cut(s) 485
Hsp92II CATG 6 cut(s) 97, 151, 253, 340, 688, 707
HspAI GCGC 6 cut(s) 363, 384, 485, 621, 694, 918
KasI GGCGCC 1 cut(s) 484
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 903
LmnI GCTCC 3 cut(s) 503, 729, 948
Lsp1109I GCAGC 4 cut(s) 262, 373, 791, 895
LweI GCATC 2 cut(s) 447, 903
MabI ACCWGGT 1 cut(s) 771
MaeI CTAG 1 cut(s) 783
MaeII ACGT 3 cut(s) 45, 143, 242
MaeIII GTNAC 4 cut(s) 73, 139, 307, 767
MalI GATC 1 cut(s) 905
MboI GATC 1 cut(s) 903
MboII GAAGA 2 cut(s) 175, 844
MhlI GDGCHC 1 cut(s) 508
MlsI TGGCCA 1 cut(s) 554
MluCI AATT 1 cut(s) 761
MluI ACGCGT 1 cut(s) 311
MluNI TGGCCA 1 cut(s) 554
Mly113I GGCGCC 1 cut(s) 485
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 28, 751
MnlI CCTC 6 cut(s) 298, 597, 751, 822, 855, 860
Mox20I TGGCCA 1 cut(s) 554
MreI CGCCGGCG 1 cut(s) 23
MroNI GCCGGC 1 cut(s) 23
MroXI GAANNNNTTC 2 cut(s) 167, 569
MscI TGGCCA 1 cut(s) 554
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 1 cut(s) 899
Msp20I TGGCCA 1 cut(s) 554
MspI CCGG 5 cut(s) 24, 132, 325, 366, 921
MspR9I CCNGG 1 cut(s) 773
Mva1269I GAATGC 1 cut(s) 732
MvaI CCWGG 1 cut(s) 773
MvnI CGCG 5 cut(s) 313, 623, 696, 738, 918
MwoI GCNNNNNNNGC 5 cut(s) 33, 392, 618, 738, 788
NaeI GCCGGC 1 cut(s) 25
NarI GGCGCC 1 cut(s) 485
NcoI CCATGG 2 cut(s) 93, 147
NdeII GATC 1 cut(s) 903
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 6 cut(s) 97, 151, 253, 340, 688, 707
NlaIV GGNNCC 4 cut(s) 462, 486, 630, 810
NmeAIII GCCGAG 1 cut(s) 393
NmuCI GTSAC 3 cut(s) 73, 307, 767
PceI AGGCCT 1 cut(s) 41
PctI GAATGC 1 cut(s) 732
PdiI GCCGGC 1 cut(s) 25
PdmI GAANNNNTTC 2 cut(s) 167, 569
PfeI GAWTC 3 cut(s) 409, 444, 495
PkrI GCNGC 9 cut(s) 91, 277, 301, 388, 620, 740, 781, 793, 885
PleI GAGTC 1 cut(s) 146
PluTI GGCGCC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 146
PpuMI RGGWCCY 1 cut(s) 808
Psp124BI GAGCTC 1 cut(s) 508
Psp1406I AACGTT 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 808
Psp6I CCWGG 1 cut(s) 771
PspFI CCCAGC 1 cut(s) 594
PspGI CCWGG 1 cut(s) 771
PspN4I GGNNCC 4 cut(s) 462, 486, 630, 810
PspPI GGNCC 2 cut(s) 628, 808
PspPPI RGGWCCY 1 cut(s) 808
RsaI GTAC 4 cut(s) 185, 221, 269, 839
RsaNI GTAC 4 cut(s) 184, 220, 268, 838
RseI CAYNNNNRTG 1 cut(s) 899
SacI GAGCTC 1 cut(s) 508
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 9 cut(s) 90, 276, 300, 387, 619, 739, 780, 792, 884
Sau3AI GATC 1 cut(s) 903
Sau96I GGNCC 2 cut(s) 628, 808
ScaI AGTACT 1 cut(s) 221
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 773
SduI GDGCHC 1 cut(s) 508
SexAI ACCWGGT 1 cut(s) 771
SfaNI GCATC 2 cut(s) 447, 903
SfcI CTRYAG 1 cut(s) 490
SfoI GGCGCC 1 cut(s) 486
SgrAI CRCCGGYG 2 cut(s) 23, 365
SinI GGWCC 2 cut(s) 628, 808
SmiMI CAYNNNNRTG 1 cut(s) 899
Sse9I AATT 1 cut(s) 761
SseBI AGGCCT 1 cut(s) 41
SspDI GGCGCC 1 cut(s) 484
SspMI CTAG 1 cut(s) 783
SstI GAGCTC 1 cut(s) 508
StuI AGGCCT 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 771
StyI CCWWGG 3 cut(s) 93, 147, 714
TaaI ACNGT 3 cut(s) 224, 307, 538
TaiI ACGT 3 cut(s) 48, 146, 245
TaqI TCGA 2 cut(s) 290, 906
TasI AATT 1 cut(s) 761
TatI WGTACW 3 cut(s) 219, 267, 837
TauI GCSGC 5 cut(s) 92, 302, 621, 741, 794
TfiI GAWTC 3 cut(s) 409, 444, 495
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 2 cut(s) 772, 895
TseFI GTSAC 3 cut(s) 73, 307, 767
TseI GCWGC 4 cut(s) 275, 386, 779, 883
Tsp45I GTSAC 3 cut(s) 73, 307, 767
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 2 cut(s) 772, 895
VpaK11BI GGWCC 2 cut(s) 628, 808
XapI RAATTY 1 cut(s) 761
XmnI GAANNNNTTC 2 cut(s) 167, 569
XspI CTAG 1 cut(s) 783
ZrmI AGTACT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.