Rmu_co8213978.1_g000001
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8213978.1
OG0001349
Physical Location & Seq
Forward (+)
87 .. 730
644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8213978.1_g000001.1.cds

Sequence Viewer

Length: 644 bp
atgcctgccgtaggtattgccagtggtggccgcagcaaggagtatgccggagaactcacccgttatgttatggtaacatgcatcatcgccgccatgggagggctgattttcggctacgacattggaatctccggtggtgtaacgtccatggactcgttcctgaacaagttttttccctctgtgtaccgtaagaaggagctagacaagtcgaccaaccagtactgccagtatgacagtcagacgttgaccatgttcacgtcttctttatacttggctgctctcatggcctcaattgtggcagccaccgtgactcagaagtttggccggaaattgtccatgttctttggtggtgttctcttctgctccggcgccatcatcaatggcgctgccagtgctgtgtggatgttgattcttggccggatactcctcggtttcggtatcggattctccaatcagtctgtgccactctacttgtctgagatggcaccatccaagttcagaggagctctcaacatcggtttccagctttctatcacacttggcatccttgccgccaatctgttgaattacttttttgccaagataaagggcggttggggatggcgtttgagtttgggtggtgcaatggtccctgcccttatcat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

214

Amino Acids

22.91

Weight (kDa)

9.62

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 368, 484
AccI GTMKAC 1 cut(s) 209
AciI CCGC 4 cut(s) 31, 90, 552, 591
AcoI YGGCCR 3 cut(s) 28, 322, 415
AcyI GRCGYC 1 cut(s) 369
AfaI GTAC 2 cut(s) 185, 221
AfiI CCNNNNNNNGG 4 cut(s) 11, 37, 99, 193
AgsI TTSAA 1 cut(s) 565
AjiI CACGTC 1 cut(s) 258
AluBI AGCT 3 cut(s) 199, 506, 526
AluI AGCT 3 cut(s) 199, 506, 526
Alw21I GWGCWC 1 cut(s) 508
AoxI GGCC 4 cut(s) 28, 285, 322, 415
ApeKI GCWGC 4 cut(s) 33, 275, 299, 386
AspLEI GCGC 2 cut(s) 371, 386
AspS9I GGNCC 1 cut(s) 628
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 1 cut(s) 628
BanI GGYRCC 2 cut(s) 368, 484
BanII GRGCYC 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 508
BbvI GCAGC 4 cut(s) 45, 262, 311, 373
BccI CCATC 4 cut(s) 380, 475, 496, 594
BciVI GTATCC 1 cut(s) 414
BfaI CTAG 1 cut(s) 200
BfoI RGCGCY 2 cut(s) 372, 387
BfuI GTATCC 1 cut(s) 414
BisI GCNGC 7 cut(s) 31, 34, 90, 276, 300, 387, 552
BlsI GCNGC 7 cut(s) 32, 35, 91, 277, 301, 388, 553
BmcAI AGTACT 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 628
BmgBI CACGTC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 3 cut(s) 370, 486, 630
BmsI GCATC 2 cut(s) 90, 552
BpiI GAAGAC 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 492, 524
BsaHI GRCGYC 1 cut(s) 369
BsaJI CCNNGG 3 cut(s) 93, 147, 427
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 37, 99, 193
Bse1I ACTGG 4 cut(s) 21, 217, 226, 390
Bse3DI GCAATG 1 cut(s) 630
BseDI CCNNGG 3 cut(s) 93, 147, 427
BseGI GGATG 4 cut(s) 408, 488, 543, 605
BseLI CCNNNNNNNGG 4 cut(s) 11, 37, 99, 193
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 2 cut(s) 326, 468
BseNI ACTGG 4 cut(s) 21, 217, 226, 390
BseRI GAGGAG 2 cut(s) 416, 516
BseXI GCAGC 4 cut(s) 45, 262, 311, 373
BshFI GGCC 4 cut(s) 30, 287, 324, 417
BshNI GGYRCC 2 cut(s) 368, 484
BsiHKAI GWGCWC 1 cut(s) 508
BsiSI CCGG 5 cut(s) 48, 132, 325, 366, 418
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 4 cut(s) 11, 37, 99, 193
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 4 cut(s) 30, 287, 324, 417
Bsp1286I GDGCHC 1 cut(s) 508
Bsp19I CCATGG 2 cut(s) 93, 147
BspACI CCGC 4 cut(s) 31, 90, 552, 591
BspANI GGCC 4 cut(s) 30, 287, 324, 417
BspCNI CTCAG 2 cut(s) 325, 469
BspLI GGNNCC 3 cut(s) 370, 486, 630
BspT107I GGYRCC 2 cut(s) 368, 484
BsrDI GCAATG 1 cut(s) 630
BsrI ACTGG 4 cut(s) 21, 217, 226, 390
BssECI CCNNGG 3 cut(s) 93, 147, 427
BssNI GRCGYC 1 cut(s) 369
BssT1I CCWWGG 2 cut(s) 93, 147
Bst4CI ACNGT 3 cut(s) 188, 236, 307
Bst6I CTCTTC 1 cut(s) 362
BstACI GRCGYC 1 cut(s) 369
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 312, 477
BstDSI CCRYGG 2 cut(s) 93, 147
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 4 cut(s) 408, 488, 543, 605
BstH2I RGCGCY 2 cut(s) 372, 387
BstHHI GCGC 2 cut(s) 371, 386
BstMWI GCNNNNNNNGC 2 cut(s) 284, 392
BstNSI RCATGY 1 cut(s) 81
BstV1I GCAGC 4 cut(s) 45, 262, 311, 373
BstV2I GAAGAC 1 cut(s) 252
BsuI GTATCC 1 cut(s) 414
BsuRI GGCC 4 cut(s) 30, 287, 324, 417
BtgI CCRYGG 2 cut(s) 93, 147
BtgZI GCGATG 1 cut(s) 70
BtrI CACGTC 1 cut(s) 258
BtsCI GGATG 4 cut(s) 408, 488, 543, 605
BtsIMutI CAGTG 2 cut(s) 28, 397
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 2 cut(s) 371, 386
Cfr13I GGNCC 1 cut(s) 628
Csp6I GTAC 2 cut(s) 184, 220
CspCI CAANNNNNGTGG 2 cut(s) 453, 488
CviAII CATG 6 cut(s) 78, 94, 148, 250, 283, 337
CviQI GTAC 2 cut(s) 184, 220
DdeI CTNAG 2 cut(s) 312, 477
DinI GGCGCC 1 cut(s) 370
EaeI YGGCCR 3 cut(s) 28, 322, 415
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Ecl136II GAGCTC 1 cut(s) 506
Eco130I CCWWGG 2 cut(s) 93, 147
Eco24I GRGCYC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 628
Eco53kI GAGCTC 1 cut(s) 506
EcoICRI GAGCTC 1 cut(s) 506
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoT14I CCWWGG 2 cut(s) 93, 147
EcoT22I ATGCAT 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 508
EgeI GGCGCC 1 cut(s) 370
EheI GGCGCC 1 cut(s) 370
ErhI CCWWGG 2 cut(s) 93, 147
FaeI CATG 6 cut(s) 81, 97, 151, 253, 286, 340
FaqI GGGAC 1 cut(s) 614
FatI CATG 6 cut(s) 77, 93, 147, 249, 282, 336
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 7 cut(s) 31, 34, 90, 276, 300, 387, 552
FokI GGATG 4 cut(s) 415, 475, 530, 612
FriOI GRGCYC 1 cut(s) 508
Fsp4HI GCNGC 7 cut(s) 31, 34, 90, 276, 300, 387, 552
FspBI CTAG 1 cut(s) 200
GlaI GCGC 2 cut(s) 370, 385
GluI GCNGC 7 cut(s) 31, 34, 90, 276, 300, 387, 552
HaeII RGCGCY 2 cut(s) 372, 387
HaeIII GGCC 4 cut(s) 30, 287, 324, 417
HapII CCGG 5 cut(s) 48, 132, 325, 366, 418
HhaI GCGC 2 cut(s) 371, 386
Hin1I GRCGYC 1 cut(s) 369
Hin1II CATG 6 cut(s) 81, 97, 151, 253, 286, 340
Hin6I GCGC 2 cut(s) 369, 384
HinP1I GCGC 2 cut(s) 369, 384
HincII GTYRAC 2 cut(s) 210, 246
HindII GTYRAC 2 cut(s) 210, 246
HinfI GANTC 5 cut(s) 126, 152, 310, 409, 444
HpaII CCGG 5 cut(s) 48, 132, 325, 366, 418
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 4 cut(s) 184, 210, 246, 255
Hpy188I TCNGA 5 cut(s) 240, 315, 443, 478, 500
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 4 cut(s) 184, 210, 246, 255
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 3 cut(s) 188, 236, 307
HpyCH4IV ACGT 3 cut(s) 143, 242, 257
HpyCH4V TGCA 2 cut(s) 81, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 392
HpyF3I CTNAG 2 cut(s) 312, 477
HpySE526I ACGT 3 cut(s) 143, 242, 257
Hsp92I GRCGYC 1 cut(s) 369
Hsp92II CATG 6 cut(s) 81, 97, 151, 253, 286, 340
HspAI GCGC 2 cut(s) 369, 384
KasI GGCGCC 1 cut(s) 368
LmnI GCTCC 3 cut(s) 196, 368, 503
Lsp1109I GCAGC 4 cut(s) 45, 262, 311, 373
LweI GCATC 2 cut(s) 90, 552
MaeI CTAG 1 cut(s) 200
MaeII ACGT 3 cut(s) 143, 242, 257
MaeIII GTNAC 3 cut(s) 73, 139, 307
MboII GAAGA 2 cut(s) 252, 349
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 3 cut(s) 291, 329, 565
Mly113I GGCGCC 1 cut(s) 369
MlyI GAGTC 2 cut(s) 146, 304
MnlI CCTC 5 cut(s) 92, 187, 298, 437, 494
Mph1103I ATGCAT 1 cut(s) 83
MspI CCGG 5 cut(s) 48, 132, 325, 366, 418
MunI CAATTG 1 cut(s) 291
MwoI GCNNNNNNNGC 2 cut(s) 284, 392
NarI GGCGCC 1 cut(s) 369
NcoI CCATGG 2 cut(s) 93, 147
NlaIII CATG 6 cut(s) 81, 97, 151, 253, 286, 340
NlaIV GGNNCC 3 cut(s) 370, 486, 630
NmuCI GTSAC 1 cut(s) 307
NsiI ATGCAT 1 cut(s) 83
NspI RCATGY 1 cut(s) 81
PfeI GAWTC 3 cut(s) 126, 409, 444
PkrI GCNGC 7 cut(s) 32, 35, 91, 277, 301, 388, 553
PleI GAGTC 2 cut(s) 146, 304
PluTI GGCGCC 1 cut(s) 372
PpsI GAGTC 2 cut(s) 146, 304
Psp124BI GAGCTC 1 cut(s) 508
PspN4I GGNNCC 3 cut(s) 370, 486, 630
PspPI GGNCC 1 cut(s) 628
RsaI GTAC 2 cut(s) 185, 221
RsaNI GTAC 2 cut(s) 184, 220
SacI GAGCTC 1 cut(s) 508
SalI GTCGAC 1 cut(s) 208
SatI GCNGC 7 cut(s) 31, 34, 90, 276, 300, 387, 552
Sau96I GGNCC 1 cut(s) 628
ScaI AGTACT 1 cut(s) 221
SchI GAGTC 2 cut(s) 146, 304
SduI GDGCHC 1 cut(s) 508
SetI ASST 7 cut(s) 16, 146, 201, 245, 260, 508, 528
SfaNI GCATC 2 cut(s) 90, 552
SfoI GGCGCC 1 cut(s) 370
SinI GGWCC 1 cut(s) 628
Sse9I AATT 3 cut(s) 291, 329, 565
SsiI CCGC 4 cut(s) 31, 90, 552, 591
SspDI GGCGCC 1 cut(s) 368
SspMI CTAG 1 cut(s) 200
SstI GAGCTC 1 cut(s) 508
StyI CCWWGG 2 cut(s) 93, 147
TaaI ACNGT 3 cut(s) 188, 236, 307
TaiI ACGT 3 cut(s) 146, 245, 260
TaqI TCGA 1 cut(s) 209
TasI AATT 3 cut(s) 291, 329, 565
TatI WGTACW 1 cut(s) 219
TauI GCSGC 3 cut(s) 33, 92, 554
TfiI GAWTC 3 cut(s) 126, 409, 444
TscAI CASTG 2 cut(s) 28, 397
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 4 cut(s) 33, 275, 299, 386
Tsp45I GTSAC 1 cut(s) 307
TspRI CASTG 2 cut(s) 28, 397
VpaK11BI GGWCC 1 cut(s) 628
XagI CCTNNNNNAGG 1 cut(s) 9
XceI RCATGY 1 cut(s) 81
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 1 cut(s) 200
ZrmI AGTACT 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.