RLG00000036648
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001349
Physical Location & Seq
Forward (+)
82918471 .. 82921894
3424 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036648

Sequence Viewer

Length: 921 bp
ATGCCTGCCGTAGCAATTGCCAGAGGTGGGGGCACACAGTATGCCGGAAAACTCACCGGTTATGTTCTGGTAACATGCATCATCGCCGCCATGGGAGGGCTGATTTTCGTCTACGACATTGGAATCTCCGGTGGTGTAACGTCCATGGACTCGTTCCTGAAAAAGTTCTTTCCTTCTGTGTACCTTGTGGCAGCCACCGTGACTCGGAAGTTTGGCCGGAAATTGTCCATGTTCTTCGGTGGTGTTCTCTTCTGCGCCGGCGCCATCATCAATGGCGCTGCCAATGCTGTGTGGATGTTGATTCTTGGCCGGATACTCCTTGGTTTCGGTATCGGATTCTCCAATCAGTCTGTGCCACTCTACTTGTCAGAGATGGCGCCATCCAAGTCCAGAGGAGCTCTCAACATTTGTTTCCAGCTTTCTATCACAGTTGGTATCCTTGTCGCCAATTTGTTGAATTACGTCTTTGCCAAGATAGAGGGCGGTTGGGGTTGGCTTTTGGGTTTGGGTGGTGCAATGGTCCCTGCCCTTATCATCACCATTGGCTCCCTAATATTACCAGACACACCAAACTCTATGATCGAGCGCGGCCAGCACGAGGAGGCCAAGACCCAACTCCGGAGGATTCGCGGTGTTGATGATGTCAGCGAGCAGTTCAATGACCTTGTTATAGCTAGTGATGAGTCCAAGAAGATAGAGGATCCATGGAGGAATCTGGCTCCAGAAGAAGTACAGGCCCCAACTTTGCATGGCAATTCTGATTCCATTCTTTCAGCAGCTTACCGAACCGCCGACCCATTGTGTCGCCGCCTACCCACGGCTTTGCTTCAACGGTTCGACCCACTTGAGAAGATTAATCTGCAAGGAAGATCTGCTATCAATTTTGGTGATTTGGTCTGCATCAATTTTGGGGGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

307

Amino Acids

32.85

Weight (kDa)

8.58

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 62 - 239 4.7e-51 Sugar (and other) transporter
MFS_1 PF07690 62 - 207 1.7e-13 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 260, 376
AccI GTMKAC 1 cut(s) 111
AccII CGCG 2 cut(s) 588, 630
AccIII TCCGGA 1 cut(s) 618
AciI CCGC 6 cut(s) 87, 483, 588, 630, 789, 808
AclWI GGATC 2 cut(s) 695, 708
AcoI YGGCCR 3 cut(s) 214, 307, 589
AcyI GRCGYC 2 cut(s) 261, 377
AfaI GTAC 2 cut(s) 182, 732
AfiI CCNNNNNNNGG 6 cut(s) 27, 96, 204, 598, 618, 817
AgeI ACCGGT 1 cut(s) 56
AgsI TTSAA 3 cut(s) 457, 658, 830
AluBI AGCT 4 cut(s) 398, 418, 674, 779
AluI AGCT 4 cut(s) 398, 418, 674, 779
Alw21I GWGCWC 1 cut(s) 400
AlwI GGATC 2 cut(s) 695, 708
Aor13HI TCCGGA 1 cut(s) 618
AoxI GGCC 5 cut(s) 214, 307, 589, 603, 735
ApeKI GCWGC 3 cut(s) 191, 278, 776
AseI ATTAAT 1 cut(s) 855
AsiGI ACCGGT 1 cut(s) 56
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 5 cut(s) 257, 263, 278, 379, 588
AspS9I GGNCC 2 cut(s) 520, 736
AsuHPI GGTGA 3 cut(s) 46, 529, 899
AvaII GGWCC 1 cut(s) 520
BaeGI GKGCMC 1 cut(s) 35
BamHI GGATCC 1 cut(s) 700
BanI GGYRCC 2 cut(s) 260, 376
BanII GRGCYC 1 cut(s) 400
BauI CACGAG 1 cut(s) 596
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 3 cut(s) 203, 265, 788
BccI CCATC 3 cut(s) 272, 367, 388
BceAI ACGGC 1 cut(s) 834
BciVI GTATCC 2 cut(s) 306, 446
BfaI CTAG 1 cut(s) 675
BfoI RGCGCY 3 cut(s) 264, 279, 380
BfuI GTATCC 2 cut(s) 306, 446
BglII AGATCT 1 cut(s) 869
BisI GCNGC 6 cut(s) 87, 192, 279, 589, 777, 808
BlsI GCNGC 6 cut(s) 88, 193, 280, 590, 778, 809
Bme18I GGWCC 1 cut(s) 520
BmgT120I GGNCC 2 cut(s) 520, 736
BmiI GGNNCC 7 cut(s) 262, 378, 522, 547, 702, 720, 738
BmsI GCATC 2 cut(s) 87, 909
BplI GAGNNNNNCTC 2 cut(s) 384, 416
BpmI CTGGAG 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 866
BsaHI GRCGYC 2 cut(s) 261, 377
BsaJI CCNNGG 5 cut(s) 90, 144, 319, 704, 816
BsaWI WCCGGW 3 cut(s) 56, 128, 618
Bsc4I CCNNNNNNNGG 6 cut(s) 27, 96, 204, 598, 618, 817
Bse118I RCCGGY 2 cut(s) 56, 257
Bse3DI GCAATG 1 cut(s) 522
BseAI TCCGGA 1 cut(s) 618
BseDI CCNNGG 5 cut(s) 90, 144, 319, 704, 816
BseGI GGATG 2 cut(s) 300, 380
BseLI CCNNNNNNNGG 6 cut(s) 27, 96, 204, 598, 618, 817
BseMI GCAATG 1 cut(s) 522
BseRI GAGGAG 2 cut(s) 408, 614
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 3 cut(s) 203, 265, 788
Bsh1236I CGCG 2 cut(s) 588, 630
BshFI GGCC 5 cut(s) 216, 309, 591, 605, 737
BshNI GGYRCC 2 cut(s) 260, 376
BshTI ACCGGT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 400
BsiSI CCGG 7 cut(s) 45, 57, 129, 217, 258, 310, 619
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 6 cut(s) 27, 96, 204, 598, 618, 817
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 5 cut(s) 216, 309, 591, 605, 737
Bsp1286I GDGCHC 2 cut(s) 35, 400
Bsp13I TCCGGA 1 cut(s) 618
Bsp143I GATC 3 cut(s) 579, 700, 869
Bsp19I CCATGG 3 cut(s) 90, 144, 704
BspACI CCGC 6 cut(s) 87, 483, 588, 630, 789, 808
BspANI GGCC 5 cut(s) 216, 309, 591, 605, 737
BspEI TCCGGA 1 cut(s) 618
BspFNI CGCG 2 cut(s) 588, 630
BspLI GGNNCC 7 cut(s) 262, 378, 522, 547, 702, 720, 738
BspPI GGATC 2 cut(s) 695, 708
BspT107I GGYRCC 2 cut(s) 260, 376
BsrDI GCAATG 1 cut(s) 522
BsrFI RCCGGY 2 cut(s) 56, 257
BssAI RCCGGY 2 cut(s) 56, 257
BssECI CCNNGG 5 cut(s) 90, 144, 319, 704, 816
BssMI GATC 3 cut(s) 579, 700, 869
BssNI GRCGYC 2 cut(s) 261, 377
BssSI CACGAG 1 cut(s) 596
BssT1I CCWWGG 4 cut(s) 90, 144, 319, 704
Bst2BI CACGAG 1 cut(s) 596
Bst4CI ACNGT 4 cut(s) 39, 199, 430, 834
Bst6I CTCTTC 1 cut(s) 254
BstACI GRCGYC 2 cut(s) 261, 377
BstC8I GCNNGC 4 cut(s) 6, 259, 593, 650
BstDSI CCRYGG 4 cut(s) 90, 144, 704, 816
BstF5I GGATG 2 cut(s) 300, 380
BstFNI CGCG 2 cut(s) 588, 630
BstH2I RGCGCY 3 cut(s) 264, 279, 380
BstHHI GCGC 5 cut(s) 257, 263, 278, 379, 588
BstKTI GATC 3 cut(s) 582, 703, 872
BstMBI GATC 3 cut(s) 579, 700, 869
BstMWI GCNNNNNNNGC 2 cut(s) 284, 592
BstNSI RCATGY 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 35
BstUI CGCG 2 cut(s) 588, 630
BstV1I GCAGC 3 cut(s) 203, 265, 788
BstX2I RGATCY 2 cut(s) 700, 869
BstYI RGATCY 2 cut(s) 700, 869
BsuI GTATCC 2 cut(s) 306, 446
BsuRI GGCC 5 cut(s) 216, 309, 591, 605, 737
BtgI CCRYGG 4 cut(s) 90, 144, 704, 816
BtgZI GCGATG 1 cut(s) 67
BtsCI GGATG 2 cut(s) 300, 380
Cac8I GCNNGC 4 cut(s) 6, 259, 593, 650
CfoI GCGC 5 cut(s) 257, 263, 278, 379, 588
Cfr10I RCCGGY 2 cut(s) 56, 257
Cfr13I GGNCC 2 cut(s) 520, 736
Csp6I GTAC 2 cut(s) 181, 731
CspAI ACCGGT 1 cut(s) 56
CspCI CAANNNNNGTGG 2 cut(s) 345, 380
CviAII CATG 6 cut(s) 75, 91, 145, 229, 705, 749
CviQI GTAC 2 cut(s) 181, 731
DinI GGCGCC 2 cut(s) 262, 378
DpnI GATC 3 cut(s) 581, 702, 871
DpnII GATC 3 cut(s) 579, 700, 869
EaeI YGGCCR 3 cut(s) 214, 307, 589
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 398
Eco130I CCWWGG 4 cut(s) 90, 144, 319, 704
Eco24I GRGCYC 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 520
Eco53kI GAGCTC 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 736
EcoT14I CCWWGG 4 cut(s) 90, 144, 319, 704
EcoT22I ATGCAT 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 400
EgeI GGCGCC 2 cut(s) 262, 378
EheI GGCGCC 2 cut(s) 262, 378
ErhI CCWWGG 4 cut(s) 90, 144, 319, 704
FaeI CATG 6 cut(s) 78, 94, 148, 232, 708, 752
FaqI GGGAC 1 cut(s) 506
FatI CATG 6 cut(s) 74, 90, 144, 228, 704, 748
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 6 cut(s) 87, 192, 279, 589, 777, 808
FokI GGATG 2 cut(s) 307, 367
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 6 cut(s) 87, 192, 279, 589, 777, 808
FspBI CTAG 1 cut(s) 675
GlaI GCGC 5 cut(s) 256, 262, 277, 378, 587
GluI GCNGC 6 cut(s) 87, 192, 279, 589, 777, 808
GsuI CTGGAG 1 cut(s) 705
HaeII RGCGCY 3 cut(s) 264, 279, 380
HaeIII GGCC 5 cut(s) 216, 309, 591, 605, 737
HapII CCGG 7 cut(s) 45, 57, 129, 217, 258, 310, 619
HhaI GCGC 5 cut(s) 257, 263, 278, 379, 588
Hin1I GRCGYC 2 cut(s) 261, 377
Hin1II CATG 6 cut(s) 78, 94, 148, 232, 708, 752
Hin6I GCGC 5 cut(s) 255, 261, 276, 377, 586
HinP1I GCGC 5 cut(s) 255, 261, 276, 377, 586
HinfI GANTC 9 cut(s) 123, 149, 202, 301, 336, 625, 683, 712, 761
HpaII CCGG 7 cut(s) 45, 57, 129, 217, 258, 310, 619
HphI GGTGA 3 cut(s) 46, 529, 899
Hpy166II GTNNAC 2 cut(s) 112, 181
Hpy188I TCNGA 4 cut(s) 207, 335, 370, 760
Hpy188III TCNNGA 4 cut(s) 157, 390, 619, 722
Hpy8I GTNNAC 2 cut(s) 112, 181
HpyAV CCTTC 1 cut(s) 183
HpyCH4III ACNGT 4 cut(s) 39, 199, 430, 834
HpyCH4IV ACGT 2 cut(s) 140, 462
HpyCH4V TGCA 5 cut(s) 78, 515, 748, 862, 900
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 592
HpySE526I ACGT 2 cut(s) 140, 462
Hsp92I GRCGYC 2 cut(s) 261, 377
Hsp92II CATG 6 cut(s) 78, 94, 148, 232, 708, 752
HspAI GCGC 5 cut(s) 255, 261, 276, 377, 586
KasI GGCGCC 2 cut(s) 260, 376
Kpn2I TCCGGA 1 cut(s) 618
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Kzo9I GATC 3 cut(s) 579, 700, 869
LmnI GCTCC 3 cut(s) 395, 551, 724
Lsp1109I GCAGC 3 cut(s) 203, 265, 788
LweI GCATC 2 cut(s) 87, 909
MaeI CTAG 1 cut(s) 675
MaeII ACGT 2 cut(s) 140, 462
MaeIII GTNAC 3 cut(s) 70, 136, 199
MalI GATC 3 cut(s) 581, 702, 871
MboI GATC 3 cut(s) 579, 700, 869
MboII GAAGA 6 cut(s) 226, 241, 703, 737, 862, 879
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 2 cut(s) 700, 869
MhlI GDGCHC 2 cut(s) 35, 400
MluCI AATT 7 cut(s) 15, 221, 448, 457, 754, 880, 904
Mly113I GGCGCC 2 cut(s) 261, 377
MlyI GAGTC 3 cut(s) 143, 196, 692
MnlI CCTC 9 cut(s) 17, 89, 386, 472, 592, 595, 615, 691, 702
Mph1103I ATGCAT 1 cut(s) 80
MreI CGCCGGCG 1 cut(s) 257
MroI TCCGGA 1 cut(s) 618
MroNI GCCGGC 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 1 cut(s) 855
MspI CCGG 7 cut(s) 45, 57, 129, 217, 258, 310, 619
MunI CAATTG 1 cut(s) 15
MvnI CGCG 2 cut(s) 588, 630
MwoI GCNNNNNNNGC 2 cut(s) 284, 592
NaeI GCCGGC 1 cut(s) 259
NarI GGCGCC 2 cut(s) 261, 377
NcoI CCATGG 3 cut(s) 90, 144, 704
NdeII GATC 3 cut(s) 579, 700, 869
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 6 cut(s) 78, 94, 148, 232, 708, 752
NlaIV GGNNCC 7 cut(s) 262, 378, 522, 547, 702, 720, 738
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 80
NspI RCATGY 1 cut(s) 78
PdiI GCCGGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 6 cut(s) 123, 301, 336, 625, 712, 761
PinAI ACCGGT 1 cut(s) 56
PkrI GCNGC 6 cut(s) 88, 193, 280, 590, 778, 809
PleI GAGTC 3 cut(s) 143, 196, 691
PluTI GGCGCC 2 cut(s) 264, 380
PpsI GAGTC 3 cut(s) 143, 196, 691
PshBI ATTAAT 1 cut(s) 855
Psp124BI GAGCTC 1 cut(s) 400
PspN4I GGNNCC 7 cut(s) 262, 378, 522, 547, 702, 720, 738
PspPI GGNCC 2 cut(s) 520, 736
PsuI RGATCY 2 cut(s) 700, 869
RsaI GTAC 2 cut(s) 182, 732
RsaNI GTAC 2 cut(s) 181, 731
SacI GAGCTC 1 cut(s) 400
SaqAI TTAA 1 cut(s) 855
SatI GCNGC 6 cut(s) 87, 192, 279, 589, 777, 808
Sau3AI GATC 3 cut(s) 579, 700, 869
Sau96I GGNCC 2 cut(s) 520, 736
SchI GAGTC 3 cut(s) 143, 196, 692
SduI GDGCHC 2 cut(s) 35, 400
SetI ASST 9 cut(s) 28, 143, 186, 400, 420, 465, 666, 676, 781
SfaNI GCATC 2 cut(s) 87, 909
SfoI GGCGCC 2 cut(s) 262, 378
SgrAI CRCCGGYG 1 cut(s) 257
SinI GGWCC 1 cut(s) 520
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
Sse9I AATT 7 cut(s) 15, 221, 448, 457, 754, 880, 904
SsiI CCGC 6 cut(s) 87, 483, 588, 630, 789, 808
SspDI GGCGCC 2 cut(s) 260, 376
SspI AATATT 1 cut(s) 555
SspMI CTAG 1 cut(s) 675
SstI GAGCTC 1 cut(s) 400
StyI CCWWGG 4 cut(s) 90, 144, 319, 704
TaaI ACNGT 4 cut(s) 39, 199, 430, 834
TaiI ACGT 2 cut(s) 143, 465
TaqI TCGA 2 cut(s) 582, 837
TasI AATT 7 cut(s) 15, 221, 448, 457, 754, 880, 904
TatI WGTACW 1 cut(s) 730
TauI GCSGC 3 cut(s) 89, 591, 810
TfiI GAWTC 6 cut(s) 123, 301, 336, 625, 712, 761
Tru1I TTAA 1 cut(s) 855
Tru9I TTAA 1 cut(s) 855
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 3 cut(s) 191, 278, 776
Tsp45I GTSAC 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 520
VspI ATTAAT 1 cut(s) 855
XceI RCATGY 1 cut(s) 78
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 1 cut(s) 675
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.