Rmu_sc0008562.1_g000006
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008562.1
OG0001349
Physical Location & Seq
Forward (+)
25476 .. 26630
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008562.1_g000006.1.cds

Sequence Viewer

Length: 1155 bp
atgcctgccgtaggtattgccagtggcggcggcaaggagtatgccggaaaactcaccggttatgttctggtaacatgcatcatcgccgccatgggagggctgattttcggctacgacattggaatctccggtggcgtaacgtccatggactcgttcctgaaaaagttctttccttctgtgtaccgtaagaaggagctggacaagtctaccaaccagtactgccagtatgacagtcagacgttgaccatgttcacgtcttccttatacttggctgctctcatggcctcagttgtggcagccaccgtgactcggaagtttggccggaaattgtccatgctcttcggtggtcttctcttctgctccggcgccatcatcaatggcgctgccaaggctgtgtggatgttgatttttggccggatactcctcggtttcggtatcggattctccaatcagtctgtgccactctacttgtctgagatggcgccatccaattacagaggagctctcaacattggtttccagctttctatcacagttggtatccttgtcgccaatttgttgaattacttctttgccaagatagagggcggttggggatggcgtttgagtttgggtggtgcaatggtccctgcccttatcatcaccgttggctccctaatattaccagacacaccaaactctatgatcgagcgcggccagcacgaggaggccaagacccaactccggaggattcgcggcgttgatgatgtcagcgacgagttgaatgaccttgttatggctagtgatgagtccaagaagatagaagatccatggaggaatctgctccagaggaagtacaggccccaactttgcatggcaattctgattccattctttcagcagcttaccggtatcaatgtgatcatgttctatgctcctgtgttgttcaacacaattggtttcggaagtgatgcttctctcatatcggctgtgatcaccggacttgttaatgttgctgcaacaatcgtttcgatgtatggtgttgataagtggggaagaaggaaactcttccttgagggaggaactcaaatgttgatatgccaaatagttgtggcgacttgcatcccttggaaatcaggtcagctgctcagagtgtcaatgtctcagtcaacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

384

Amino Acids

41.75

Weight (kDa)

9.29

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 365, 481
AccI GTMKAC 1 cut(s) 206
AccII CGCG 2 cut(s) 693, 735
AccIII TCCGGA 1 cut(s) 723
AciI CCGC 6 cut(s) 27, 30, 87, 588, 693, 735
AclWI GGATC 1 cut(s) 800
AcoI YGGCCR 3 cut(s) 319, 412, 694
AcyI GRCGYC 2 cut(s) 366, 482
AfaI GTAC 3 cut(s) 182, 218, 836
AfiI CCNNNNNNNGG 7 cut(s) 11, 96, 190, 309, 703, 723, 775
AgeI ACCGGT 2 cut(s) 56, 887
AgsI TTSAA 3 cut(s) 562, 763, 928
AjiI CACGTC 1 cut(s) 255
AluBI AGCT 5 cut(s) 196, 503, 523, 883, 1123
AluI AGCT 5 cut(s) 196, 503, 523, 883, 1123
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 1 cut(s) 1146
AlwI GGATC 1 cut(s) 800
Aor13HI TCCGGA 1 cut(s) 723
AoxI GGCC 6 cut(s) 282, 319, 412, 694, 708, 839
ApeKI GCWGC 6 cut(s) 272, 296, 383, 880, 995, 1123
AsiGI ACCGGT 2 cut(s) 56, 887
Asp700I GAANNNNTTC 3 cut(s) 164, 566, 1046
AspLEI GCGC 4 cut(s) 368, 383, 484, 693
AspS9I GGNCC 2 cut(s) 625, 840
AsuHPI GGTGA 3 cut(s) 46, 634, 967
AvaII GGWCC 1 cut(s) 625
BanI GGYRCC 2 cut(s) 365, 481
BanII GRGCYC 1 cut(s) 505
BauI CACGAG 1 cut(s) 701
BbsI GAAGAC 2 cut(s) 249, 341
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 6 cut(s) 259, 308, 370, 892, 982, 1110
BccI CCATC 4 cut(s) 377, 472, 493, 591
BciVI GTATCC 2 cut(s) 411, 551
BclI TGATCA 2 cut(s) 900, 972
BcoDI GTCTC 1 cut(s) 1146
BfaI CTAG 1 cut(s) 780
BfoI RGCGCY 3 cut(s) 369, 384, 485
BfuI GTATCC 2 cut(s) 411, 551
BmcAI AGTACT 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 625
BmgBI CACGTC 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 625, 840
BmiI GGNNCC 5 cut(s) 367, 483, 627, 652, 842
BmsI GCATC 3 cut(s) 87, 940, 1110
BpiI GAAGAC 2 cut(s) 249, 341
BplI GAGNNNNNCTC 2 cut(s) 489, 521
BpmI CTGGAG 1 cut(s) 809
BpuEI CTTGAG 1 cut(s) 1073
BsaHI GRCGYC 2 cut(s) 366, 482
BsaJI CCNNGG 6 cut(s) 90, 144, 387, 424, 809, 1106
BsaWI WCCGGW 5 cut(s) 56, 128, 723, 887, 977
Bsc4I CCNNNNNNNGG 7 cut(s) 11, 96, 190, 309, 703, 723, 775
Bse118I RCCGGY 2 cut(s) 56, 887
Bse1I ACTGG 3 cut(s) 21, 214, 223
Bse3DI GCAATG 1 cut(s) 627
BseAI TCCGGA 1 cut(s) 723
BseDI CCNNGG 6 cut(s) 90, 144, 387, 424, 809, 1106
BseGI GGATG 4 cut(s) 405, 485, 602, 1101
BseLI CCNNNNNNNGG 7 cut(s) 11, 96, 190, 309, 703, 723, 775
BseMI GCAATG 1 cut(s) 627
BseMII CTCAG 3 cut(s) 300, 465, 1141
BseNI ACTGG 3 cut(s) 21, 214, 223
BseRI GAGGAG 3 cut(s) 413, 513, 719
BseXI GCAGC 6 cut(s) 259, 308, 370, 892, 982, 1110
Bsh1236I CGCG 2 cut(s) 693, 735
BshFI GGCC 6 cut(s) 284, 321, 414, 696, 710, 841
BshNI GGYRCC 2 cut(s) 365, 481
BshTI ACCGGT 2 cut(s) 56, 887
BsiHKAI GWGCWC 1 cut(s) 505
BsiSI CCGG 9 cut(s) 45, 57, 129, 322, 363, 415, 724, 888, 978
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 7 cut(s) 11, 96, 190, 309, 703, 723, 775
BsmAI GTCTC 1 cut(s) 1146
BsmFI GGGAC 1 cut(s) 611
BsnI GGCC 6 cut(s) 284, 321, 414, 696, 710, 841
Bsp1286I GDGCHC 1 cut(s) 505
Bsp13I TCCGGA 1 cut(s) 723
Bsp143I GATC 4 cut(s) 684, 805, 900, 972
Bsp19I CCATGG 3 cut(s) 90, 144, 809
BspACI CCGC 6 cut(s) 27, 30, 87, 588, 693, 735
BspANI GGCC 6 cut(s) 284, 321, 414, 696, 710, 841
BspCNI CTCAG 3 cut(s) 299, 466, 1140
BspEI TCCGGA 1 cut(s) 723
BspFNI CGCG 2 cut(s) 693, 735
BspLI GGNNCC 5 cut(s) 367, 483, 627, 652, 842
BspPI GGATC 1 cut(s) 800
BspQI GCTCTTC 1 cut(s) 344
BspT107I GGYRCC 2 cut(s) 365, 481
BsrDI GCAATG 1 cut(s) 627
BsrFI RCCGGY 2 cut(s) 56, 887
BsrI ACTGG 3 cut(s) 21, 214, 223
BssAI RCCGGY 2 cut(s) 56, 887
BssECI CCNNGG 6 cut(s) 90, 144, 387, 424, 809, 1106
BssMI GATC 4 cut(s) 684, 805, 900, 972
BssNI GRCGYC 2 cut(s) 366, 482
BssSI CACGAG 1 cut(s) 701
BssT1I CCWWGG 5 cut(s) 90, 144, 387, 809, 1106
Bst2BI CACGAG 1 cut(s) 701
Bst4CI ACNGT 5 cut(s) 185, 233, 304, 535, 646
Bst6I CTCTTC 3 cut(s) 344, 359, 1052
BstACI GRCGYC 2 cut(s) 366, 482
BstC8I GCNNGC 2 cut(s) 6, 698
BstDEI CTNAG 4 cut(s) 286, 474, 1127, 1143
BstDSI CCRYGG 3 cut(s) 90, 144, 809
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 4 cut(s) 405, 485, 602, 1101
BstFNI CGCG 2 cut(s) 693, 735
BstH2I RGCGCY 3 cut(s) 369, 384, 485
BstHHI GCGC 4 cut(s) 368, 383, 484, 693
BstKTI GATC 4 cut(s) 687, 808, 903, 975
BstMAI GTCTC 1 cut(s) 1146
BstMBI GATC 4 cut(s) 684, 805, 900, 972
BstMWI GCNNNNNNNGC 3 cut(s) 281, 389, 697
BstNSI RCATGY 1 cut(s) 78
BstUI CGCG 2 cut(s) 693, 735
BstV1I GCAGC 6 cut(s) 259, 308, 370, 892, 982, 1110
BstV2I GAAGAC 2 cut(s) 249, 341
BstX2I RGATCY 1 cut(s) 805
BstYI RGATCY 1 cut(s) 805
BsuI GTATCC 2 cut(s) 411, 551
BsuRI GGCC 6 cut(s) 284, 321, 414, 696, 710, 841
BtgI CCRYGG 3 cut(s) 90, 144, 809
BtgZI GCGATG 1 cut(s) 67
BtrI CACGTC 1 cut(s) 255
BtsCI GGATG 4 cut(s) 405, 485, 602, 1101
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 2 cut(s) 6, 698
CfoI GCGC 4 cut(s) 368, 383, 484, 693
Cfr10I RCCGGY 2 cut(s) 56, 887
Cfr13I GGNCC 2 cut(s) 625, 840
Csp6I GTAC 3 cut(s) 181, 217, 835
CspAI ACCGGT 2 cut(s) 56, 887
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviQI GTAC 3 cut(s) 181, 217, 835
DdeI CTNAG 4 cut(s) 286, 474, 1127, 1143
DinI GGCGCC 2 cut(s) 367, 483
DpnI GATC 4 cut(s) 686, 807, 902, 974
DpnII GATC 4 cut(s) 684, 805, 900, 972
EaeI YGGCCR 3 cut(s) 319, 412, 694
Eam1104I CTCTTC 3 cut(s) 344, 359, 1052
EarI CTCTTC 3 cut(s) 344, 359, 1052
Ecl136II GAGCTC 1 cut(s) 503
Eco130I CCWWGG 5 cut(s) 90, 144, 387, 809, 1106
Eco24I GRGCYC 1 cut(s) 505
Eco47I GGWCC 1 cut(s) 625
Eco53kI GAGCTC 1 cut(s) 503
EcoICRI GAGCTC 1 cut(s) 503
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 840
EcoT14I CCWWGG 5 cut(s) 90, 144, 387, 809, 1106
EcoT22I ATGCAT 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 505
EgeI GGCGCC 2 cut(s) 367, 483
EheI GGCGCC 2 cut(s) 367, 483
ErhI CCWWGG 5 cut(s) 90, 144, 387, 809, 1106
FalI AAGNNNNNCTT 2 cut(s) 937, 969
FaqI GGGAC 1 cut(s) 611
FbaI TGATCA 2 cut(s) 900, 972
FblI GTMKAC 1 cut(s) 206
FokI GGATG 4 cut(s) 412, 472, 609, 1088
FriOI GRGCYC 1 cut(s) 505
FspBI CTAG 1 cut(s) 780
GlaI GCGC 4 cut(s) 367, 382, 483, 692
GsuI CTGGAG 1 cut(s) 809
HaeII RGCGCY 3 cut(s) 369, 384, 485
HaeIII GGCC 6 cut(s) 284, 321, 414, 696, 710, 841
HapII CCGG 9 cut(s) 45, 57, 129, 322, 363, 415, 724, 888, 978
HhaI GCGC 4 cut(s) 368, 383, 484, 693
Hin1I GRCGYC 2 cut(s) 366, 482
Hin6I GCGC 4 cut(s) 366, 381, 482, 691
HinP1I GCGC 4 cut(s) 366, 381, 482, 691
HincII GTYRAC 2 cut(s) 243, 1149
HindII GTYRAC 2 cut(s) 243, 1149
HinfI GANTC 8 cut(s) 123, 149, 307, 441, 730, 788, 817, 865
HpaII CCGG 9 cut(s) 45, 57, 129, 322, 363, 415, 724, 888, 978
HphI GGTGA 3 cut(s) 46, 634, 967
Hpy166II GTNNAC 5 cut(s) 181, 207, 243, 252, 1149
Hpy188I TCNGA 7 cut(s) 237, 312, 440, 475, 864, 944, 1130
Hpy188III TCNNGA 3 cut(s) 157, 724, 826
Hpy8I GTNNAC 5 cut(s) 181, 207, 243, 252, 1149
Hpy99I CGWCG 1 cut(s) 758
HpyAV CCTTC 3 cut(s) 183, 184, 1032
HpyCH4III ACNGT 5 cut(s) 185, 233, 304, 535, 646
HpyCH4IV ACGT 3 cut(s) 140, 239, 254
HpyCH4V TGCA 5 cut(s) 78, 620, 852, 998, 1101
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 389, 697
HpyF3I CTNAG 4 cut(s) 286, 474, 1127, 1143
HpySE526I ACGT 3 cut(s) 140, 239, 254
Hsp92I GRCGYC 2 cut(s) 366, 482
HspAI GCGC 4 cut(s) 366, 381, 482, 691
KasI GGCGCC 2 cut(s) 365, 481
Kpn2I TCCGGA 1 cut(s) 723
Ksp22I TGATCA 2 cut(s) 900, 972
Kzo9I GATC 4 cut(s) 684, 805, 900, 972
LguI GCTCTTC 1 cut(s) 344
LmnI GCTCC 6 cut(s) 193, 365, 500, 656, 828, 919
Lsp1109I GCAGC 6 cut(s) 259, 308, 370, 892, 982, 1110
LweI GCATC 3 cut(s) 87, 940, 1110
MaeI CTAG 1 cut(s) 780
MaeII ACGT 3 cut(s) 140, 239, 254
MaeIII GTNAC 3 cut(s) 70, 136, 304
MalI GATC 4 cut(s) 686, 807, 902, 974
MboI GATC 4 cut(s) 684, 805, 900, 972
MboII GAAGA 8 cut(s) 249, 331, 341, 346, 808, 815, 1039, 1047
MfeI CAATTG 1 cut(s) 933
MflI RGATCY 1 cut(s) 805
MhlI GDGCHC 1 cut(s) 505
MluCI AATT 6 cut(s) 326, 490, 553, 562, 858, 933
Mly113I GGCGCC 2 cut(s) 366, 482
MlyI GAGTC 3 cut(s) 143, 301, 797
Mph1103I ATGCAT 1 cut(s) 80
MroI TCCGGA 1 cut(s) 723
MroXI GAANNNNTTC 3 cut(s) 164, 566, 1046
MseI TTAA 1 cut(s) 987
MspA1I CMGCKG 1 cut(s) 1123
MspI CCGG 9 cut(s) 45, 57, 129, 322, 363, 415, 724, 888, 978
MunI CAATTG 1 cut(s) 933
MvnI CGCG 2 cut(s) 693, 735
MwoI GCNNNNNNNGC 3 cut(s) 281, 389, 697
NarI GGCGCC 2 cut(s) 366, 482
NcoI CCATGG 3 cut(s) 90, 144, 809
NdeII GATC 4 cut(s) 684, 805, 900, 972
NlaIV GGNNCC 5 cut(s) 367, 483, 627, 652, 842
NmuCI GTSAC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 80
NspI RCATGY 1 cut(s) 78
PciSI GCTCTTC 1 cut(s) 344
PdmI GAANNNNTTC 3 cut(s) 164, 566, 1046
PfeI GAWTC 5 cut(s) 123, 441, 730, 817, 865
PinAI ACCGGT 2 cut(s) 56, 887
PleI GAGTC 3 cut(s) 143, 301, 796
PluTI GGCGCC 2 cut(s) 369, 485
PpsI GAGTC 3 cut(s) 143, 301, 796
Psp124BI GAGCTC 1 cut(s) 505
PspN4I GGNNCC 5 cut(s) 367, 483, 627, 652, 842
PspPI GGNCC 2 cut(s) 625, 840
PsuI RGATCY 1 cut(s) 805
PvuII CAGCTG 1 cut(s) 1123
RsaI GTAC 3 cut(s) 182, 218, 836
RsaNI GTAC 3 cut(s) 181, 217, 835
SacI GAGCTC 1 cut(s) 505
SapI GCTCTTC 1 cut(s) 344
SaqAI TTAA 1 cut(s) 987
Sau3AI GATC 4 cut(s) 684, 805, 900, 972
Sau96I GGNCC 2 cut(s) 625, 840
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 3 cut(s) 143, 301, 797
SduI GDGCHC 1 cut(s) 505
SfaNI GCATC 3 cut(s) 87, 940, 1110
SfoI GGCGCC 2 cut(s) 367, 483
SinI GGWCC 1 cut(s) 625
SmlI CTYRAG 1 cut(s) 1052
SmoI CTYRAG 1 cut(s) 1052
Sse9I AATT 6 cut(s) 326, 490, 553, 562, 858, 933
SsiI CCGC 6 cut(s) 27, 30, 87, 588, 693, 735
SspDI GGCGCC 2 cut(s) 365, 481
SspI AATATT 1 cut(s) 660
SspMI CTAG 1 cut(s) 780
SstI GAGCTC 1 cut(s) 505
StyI CCWWGG 5 cut(s) 90, 144, 387, 809, 1106
TaaI ACNGT 5 cut(s) 185, 233, 304, 535, 646
TaiI ACGT 3 cut(s) 143, 242, 257
TaqI TCGA 2 cut(s) 687, 1010
TasI AATT 6 cut(s) 326, 490, 553, 562, 858, 933
TatI WGTACW 2 cut(s) 216, 834
TauI GCSGC 5 cut(s) 30, 33, 89, 696, 738
TfiI GAWTC 5 cut(s) 123, 441, 730, 817, 865
Tru1I TTAA 1 cut(s) 987
Tru9I TTAA 1 cut(s) 987
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 6 cut(s) 272, 296, 383, 880, 995, 1123
Tsp45I GTSAC 1 cut(s) 304
TspRI CASTG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 625
XagI CCTNNNNNAGG 1 cut(s) 9
XceI RCATGY 1 cut(s) 78
XmiI GTMKAC 1 cut(s) 206
XmnI GAANNNNTTC 3 cut(s) 164, 566, 1046
XspI CTAG 1 cut(s) 780
ZrmI AGTACT 1 cut(s) 218
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.