Rmu_co8005454.1_g000001
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8005454.1
OG0001349
Physical Location & Seq
Forward (+)
10 .. 529
520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8005454.1_g000001.1.cds

Sequence Viewer

Length: 520 bp
atggactcgttcctgaaaaagttctttccttctgtgtaccgtaagaagcagctggacaagtctaccaaccagtactgccagtatgacagtcagacgttgaccatgttcacgtcttccttatacttggctgctctcatggcctcagttgtggcagccaccgtgactcggaagtttggccggaaattgtccatgctcttcggtggtcttctcttctgctccggcgccatcatcaatggcgctgccaaggctgtgtggatgttgatttttggccggatactcctcggtttcggtatcggattctccaatcagtctgtgccactctacttgtctgagatggcgccatccaattacagaggagctctcaacattggtttccagctttctatcacagttggtatccttgtcgccaatttgttgaattacttctttgccaagatagagggcggttggggatggcgtttgagtttgggtggtgcaatggtccctgcccttatcatcaccgttggctccctaatattac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

173

Amino Acids

18.88

Weight (kDa)

9.91

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 221, 337
AccI GTMKAC 1 cut(s) 62
AciI CCGC 1 cut(s) 444
AcoI YGGCCR 2 cut(s) 175, 268
AcyI GRCGYC 2 cut(s) 222, 338
AfaI GTAC 2 cut(s) 38, 74
AfiI CCNNNNNNNGG 1 cut(s) 165
AgsI TTSAA 1 cut(s) 418
AjiI CACGTC 1 cut(s) 111
AluBI AGCT 3 cut(s) 52, 359, 379
AluI AGCT 3 cut(s) 52, 359, 379
Alw21I GWGCWC 1 cut(s) 361
AoxI GGCC 3 cut(s) 138, 175, 268
ApeKI GCWGC 4 cut(s) 49, 128, 152, 239
Asp700I GAANNNNTTC 2 cut(s) 20, 422
AspLEI GCGC 3 cut(s) 224, 239, 340
AspS9I GGNCC 1 cut(s) 481
AsuHPI GGTGA 1 cut(s) 490
AvaII GGWCC 1 cut(s) 481
BanI GGYRCC 2 cut(s) 221, 337
BanII GRGCYC 1 cut(s) 361
BbsI GAAGAC 2 cut(s) 105, 197
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 4 cut(s) 61, 115, 164, 226
BccI CCATC 4 cut(s) 233, 328, 349, 447
BciVI GTATCC 2 cut(s) 267, 407
BfoI RGCGCY 3 cut(s) 225, 240, 341
BfuI GTATCC 2 cut(s) 267, 407
BisI GCNGC 4 cut(s) 50, 129, 153, 240
BlsI GCNGC 4 cut(s) 51, 130, 154, 241
BmcAI AGTACT 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 481
BmgBI CACGTC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 4 cut(s) 223, 339, 483, 508
BpiI GAAGAC 2 cut(s) 105, 197
BplI GAGNNNNNCTC 2 cut(s) 345, 377
BsaHI GRCGYC 2 cut(s) 222, 338
BsaJI CCNNGG 2 cut(s) 243, 280
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 2 cut(s) 70, 79
Bse3DI GCAATG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 243, 280
BseGI GGATG 3 cut(s) 261, 341, 458
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 2 cut(s) 156, 321
BseNI ACTGG 2 cut(s) 70, 79
BseRI GAGGAG 2 cut(s) 269, 369
BseXI GCAGC 4 cut(s) 61, 115, 164, 226
BshFI GGCC 3 cut(s) 140, 177, 270
BshNI GGYRCC 2 cut(s) 221, 337
BsiHKAI GWGCWC 1 cut(s) 361
BsiSI CCGG 3 cut(s) 178, 219, 271
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 467
BsnI GGCC 3 cut(s) 140, 177, 270
Bsp1286I GDGCHC 1 cut(s) 361
BspACI CCGC 1 cut(s) 444
BspANI GGCC 3 cut(s) 140, 177, 270
BspCNI CTCAG 2 cut(s) 155, 322
BspLI GGNNCC 4 cut(s) 223, 339, 483, 508
BspQI GCTCTTC 1 cut(s) 200
BspT107I GGYRCC 2 cut(s) 221, 337
BsrDI GCAATG 1 cut(s) 483
BsrI ACTGG 2 cut(s) 70, 79
BssECI CCNNGG 2 cut(s) 243, 280
BssNI GRCGYC 2 cut(s) 222, 338
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 5 cut(s) 41, 89, 160, 391, 502
Bst6I CTCTTC 2 cut(s) 200, 215
BstACI GRCGYC 2 cut(s) 222, 338
BstDEI CTNAG 2 cut(s) 142, 330
BstF5I GGATG 3 cut(s) 261, 341, 458
BstH2I RGCGCY 3 cut(s) 225, 240, 341
BstHHI GCGC 3 cut(s) 224, 239, 340
BstMWI GCNNNNNNNGC 2 cut(s) 137, 245
BstV1I GCAGC 4 cut(s) 61, 115, 164, 226
BstV2I GAAGAC 2 cut(s) 105, 197
BsuI GTATCC 2 cut(s) 267, 407
BsuRI GGCC 3 cut(s) 140, 177, 270
BtrI CACGTC 1 cut(s) 111
BtsCI GGATG 3 cut(s) 261, 341, 458
CfoI GCGC 3 cut(s) 224, 239, 340
Cfr13I GGNCC 1 cut(s) 481
Csp6I GTAC 2 cut(s) 37, 73
CspCI CAANNNNNGTGG 2 cut(s) 306, 341
CviAII CATG 3 cut(s) 103, 136, 190
CviQI GTAC 2 cut(s) 37, 73
DdeI CTNAG 2 cut(s) 142, 330
DinI GGCGCC 2 cut(s) 223, 339
EaeI YGGCCR 2 cut(s) 175, 268
Eam1104I CTCTTC 2 cut(s) 200, 215
EarI CTCTTC 2 cut(s) 200, 215
Ecl136II GAGCTC 1 cut(s) 359
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 481
Eco53kI GAGCTC 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 361
EgeI GGCGCC 2 cut(s) 223, 339
EheI GGCGCC 2 cut(s) 223, 339
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 3 cut(s) 106, 139, 193
FaiI YATR 5 cut(s) 84, 104, 121, 137, 191
FaqI GGGAC 1 cut(s) 467
FatI CATG 3 cut(s) 102, 135, 189
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 4 cut(s) 50, 129, 153, 240
FokI GGATG 3 cut(s) 268, 328, 465
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 4 cut(s) 50, 129, 153, 240
GlaI GCGC 3 cut(s) 223, 238, 339
GluI GCNGC 4 cut(s) 50, 129, 153, 240
HaeII RGCGCY 3 cut(s) 225, 240, 341
HaeIII GGCC 3 cut(s) 140, 177, 270
HapII CCGG 3 cut(s) 178, 219, 271
HhaI GCGC 3 cut(s) 224, 239, 340
Hin1I GRCGYC 2 cut(s) 222, 338
Hin1II CATG 3 cut(s) 106, 139, 193
Hin6I GCGC 3 cut(s) 222, 237, 338
HinP1I GCGC 3 cut(s) 222, 237, 338
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 3 cut(s) 5, 163, 297
HpaII CCGG 3 cut(s) 178, 219, 271
HphI GGTGA 1 cut(s) 490
Hpy166II GTNNAC 4 cut(s) 37, 63, 99, 108
Hpy188I TCNGA 4 cut(s) 93, 168, 296, 331
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 4 cut(s) 37, 63, 99, 108
HpyAV CCTTC 1 cut(s) 39
HpyCH4III ACNGT 5 cut(s) 41, 89, 160, 391, 502
HpyCH4IV ACGT 2 cut(s) 95, 110
HpyCH4V TGCA 1 cut(s) 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 245
HpyF3I CTNAG 2 cut(s) 142, 330
HpySE526I ACGT 2 cut(s) 95, 110
Hsp92I GRCGYC 2 cut(s) 222, 338
Hsp92II CATG 3 cut(s) 106, 139, 193
HspAI GCGC 3 cut(s) 222, 237, 338
KasI GGCGCC 2 cut(s) 221, 337
LguI GCTCTTC 1 cut(s) 200
LmnI GCTCC 3 cut(s) 221, 356, 512
LpnPI CCDG 9 cut(s) 26, 38, 83, 92, 191, 232, 284, 389, 498
Lsp1109I GCAGC 4 cut(s) 61, 115, 164, 226
MaeII ACGT 2 cut(s) 95, 110
MaeIII GTNAC 1 cut(s) 160
MboII GAAGA 4 cut(s) 105, 187, 197, 202
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 4 cut(s) 182, 346, 409, 418
Mly113I GGCGCC 2 cut(s) 222, 338
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 4 cut(s) 151, 290, 347, 433
MroXI GAANNNNTTC 2 cut(s) 20, 422
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 3 cut(s) 178, 219, 271
MwoI GCNNNNNNNGC 2 cut(s) 137, 245
NarI GGCGCC 2 cut(s) 222, 338
NlaIII CATG 3 cut(s) 106, 139, 193
NlaIV GGNNCC 4 cut(s) 223, 339, 483, 508
NmuCI GTSAC 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 200
PdmI GAANNNNTTC 2 cut(s) 20, 422
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 4 cut(s) 51, 130, 154, 241
PleI GAGTC 1 cut(s) 157
PluTI GGCGCC 2 cut(s) 225, 341
PpsI GAGTC 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 361
PspN4I GGNNCC 4 cut(s) 223, 339, 483, 508
PspPI GGNCC 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 2 cut(s) 38, 74
RsaNI GTAC 2 cut(s) 37, 73
SacI GAGCTC 1 cut(s) 361
SapI GCTCTTC 1 cut(s) 200
SatI GCNGC 4 cut(s) 50, 129, 153, 240
Sau96I GGNCC 1 cut(s) 481
ScaI AGTACT 1 cut(s) 74
SchI GAGTC 1 cut(s) 157
SduI GDGCHC 1 cut(s) 361
SetI ASST 5 cut(s) 54, 98, 113, 361, 381
SfoI GGCGCC 2 cut(s) 223, 339
SinI GGWCC 1 cut(s) 481
Sse9I AATT 4 cut(s) 182, 346, 409, 418
SsiI CCGC 1 cut(s) 444
SspDI GGCGCC 2 cut(s) 221, 337
SspI AATATT 1 cut(s) 516
SstI GAGCTC 1 cut(s) 361
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 5 cut(s) 41, 89, 160, 391, 502
TaiI ACGT 2 cut(s) 98, 113
TasI AATT 4 cut(s) 182, 346, 409, 418
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 1 cut(s) 297
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 4 cut(s) 49, 128, 152, 239
Tsp45I GTSAC 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 481
XmiI GTMKAC 1 cut(s) 62
XmnI GAANNNNTTC 2 cut(s) 20, 422
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.