Rh5CG055300
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001349
Physical Location & Seq
Reverse (-)
4005292 .. 4008215
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG055300.1

Sequence Viewer

Length: 1158 bp
ATGCCTGCCGTAGGTATTGCCAGTGGTGGCGAAAAGGAGTATGCCGGAAAACTCACCGGTTATGTACTGGTAACATGCATCATCGCCGCCATGGGGGGGCTGATTTTCGGCTACGACATTGGAATCTCCGGTGGTGTAACGTCCATGGACTCGTTCCTGATGAAGTTTTTTCCTTCTGTGTACCGTAAGAAGGAGCTGGACAAGTCGACCAACCAGTACTGCCAGTATGACAGTCAGATTTTGACCATGTTCACGTCTTCGTTGTACTTGGCTGCTCTCATGGCCTCGATTGTGGCAGCCACCGTGACTCGGAAGTTTGGCCGGAAATTGTCCATGTTGTTCGGCGGTCTTCTGTTCTGCTCCGGCGCCATCATCAATGCCGCTGCCAAAGCTGTGTGGATGTTGATTCTTGGCCGGATATTGCTTGGTTTCGGTATCGGATTCTCCAATCAGTCTGTGCCACTCTACTTGTCTGAGATGGCGCCATCCAAGTTCAGAGGAGCTCTCAACATTGGTTTCCAGCTTTCTATCACAATTGGTATCCTTGCCGCCAATTTGTTGAATTACTTCTTTGCCAAGATAAAGGGCGGTTGGGGATGGCGTTTGAGTTTGGGTGGTGCAATGGTCCCTGCCCTTATCATCACCGTTGGCTCCCTAATATTACCAGACACACCAAACTCTATGATCGAGCGCGGCCAGCACGAGAAAGCCAAGACCCATCTCCGGAGAATTCGCGGCGTTGATGATGTCAGCGAGGAGTTCAATGACCTTATTGTAGCTAGTGATGAGTGTAAGAAGATAGAGGATCCATGGAGGAATCTACTTAAGAGGAAGTACAGGCCCCAACTCTGCATGGCAATTCTGATTCCATTCTTTCAGCAGCTTACCGGTATCAATGTGATCATGTTCTATGCTCCTGTGTTGTTCAACACAATTGGTTTCGGAAGTGATGCTTCTCTCATATCGGCTGTGATCACCGGAACTGTCAATGTTGCTGCAACATGTGTTTCGATGTATGGTGTTGATAAGTGGGGAAGGAGGAAGCTCTTCCTTGAGGGTGGAACTCAAATGTTGATATGCCAGGTACTTAAGCAAGCACTCGTTTTTCAACTTGGGTTTTCCCCTTTCATTTGTTTAATGAATTTTTTTTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

385

Amino Acids

42.08

Weight (kDa)

9.38

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 26 - 364 2.5e-96 Sugar (and other) transporter
MFS_1 PF07690 76 - 358 1.1e-24 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 365, 481
AccI GTMKAC 1 cut(s) 206
AccII CGCG 2 cut(s) 693, 735
AccIII TCCGGA 1 cut(s) 723
AciI CCGC 7 cut(s) 87, 345, 381, 549, 588, 693, 735
AclWI GGATC 2 cut(s) 800, 813
AcoI YGGCCR 3 cut(s) 319, 412, 694
AcsI RAATTY 2 cut(s) 729, 1141
AcyI GRCGYC 2 cut(s) 366, 482
AfaI GTAC 6 cut(s) 66, 182, 218, 266, 836, 1086
AfiI CCNNNNNNNGG 6 cut(s) 11, 93, 96, 190, 309, 723
AflII CTTAAG 2 cut(s) 824, 1088
AflIII ACRYGT 1 cut(s) 1001
AgeI ACCGGT 2 cut(s) 56, 887
AgsI TTSAA 4 cut(s) 562, 763, 928, 1109
AjiI CACGTC 1 cut(s) 255
AjnI CCWGG 1 cut(s) 1080
AluBI AGCT 7 cut(s) 196, 392, 503, 523, 779, 883, 1045
AluI AGCT 7 cut(s) 196, 392, 503, 523, 779, 883, 1045
Alw21I GWGCWC 1 cut(s) 505
AlwI GGATC 2 cut(s) 800, 813
Aor13HI TCCGGA 1 cut(s) 723
AoxI GGCC 5 cut(s) 282, 319, 412, 694, 839
ApeKI GCWGC 5 cut(s) 272, 296, 383, 880, 995
ApoI RAATTY 2 cut(s) 729, 1141
AsiGI ACCGGT 2 cut(s) 56, 887
Asp700I GAANNNNTTC 2 cut(s) 566, 1046
AspLEI GCGC 3 cut(s) 368, 484, 693
AspS9I GGNCC 2 cut(s) 625, 840
AsuHPI GGTGA 3 cut(s) 46, 634, 967
AvaII GGWCC 1 cut(s) 625
BamHI GGATCC 1 cut(s) 805
BanI GGYRCC 2 cut(s) 365, 481
BanII GRGCYC 1 cut(s) 505
BauI CACGAG 1 cut(s) 701
BbsI GAAGAC 2 cut(s) 249, 341
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 5 cut(s) 259, 308, 370, 892, 982
BccI CCATC 5 cut(s) 377, 472, 493, 591, 726
BciT130I CCWGG 1 cut(s) 1082
BciVI GTATCC 1 cut(s) 551
BclI TGATCA 2 cut(s) 900, 972
BfaI CTAG 1 cut(s) 780
BfoI RGCGCY 2 cut(s) 369, 485
BfrI CTTAAG 2 cut(s) 824, 1088
BfuI GTATCC 1 cut(s) 551
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 1082
Bme18I GGWCC 1 cut(s) 625
BmgBI CACGTC 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 625, 840
BmiI GGNNCC 6 cut(s) 367, 483, 627, 652, 807, 842
BmrFI CCNGG 1 cut(s) 1082
BmsI GCATC 2 cut(s) 87, 940
BpiI GAAGAC 2 cut(s) 249, 341
BplI GAGNNNNNCTC 2 cut(s) 489, 521
BpuEI CTTGAG 1 cut(s) 1073
BsaHI GRCGYC 2 cut(s) 366, 482
BsaJI CCNNGG 3 cut(s) 90, 144, 809
BsaWI WCCGGW 5 cut(s) 56, 128, 723, 887, 977
Bsc4I CCNNNNNNNGG 6 cut(s) 11, 93, 96, 190, 309, 723
Bse118I RCCGGY 2 cut(s) 56, 887
Bse1I ACTGG 4 cut(s) 21, 72, 214, 223
Bse3DI GCAATG 1 cut(s) 627
BseAI TCCGGA 1 cut(s) 723
BseBI CCWGG 1 cut(s) 1082
BseDI CCNNGG 3 cut(s) 90, 144, 809
BseGI GGATG 3 cut(s) 405, 485, 602
BseLI CCNNNNNNNGG 6 cut(s) 11, 93, 96, 190, 309, 723
BseMI GCAATG 1 cut(s) 627
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 4 cut(s) 21, 72, 214, 223
BseRI GAGGAG 2 cut(s) 513, 770
BseXI GCAGC 5 cut(s) 259, 308, 370, 892, 982
Bsh1236I CGCG 2 cut(s) 693, 735
BshFI GGCC 5 cut(s) 284, 321, 414, 696, 841
BshNI GGYRCC 2 cut(s) 365, 481
BshTI ACCGGT 2 cut(s) 56, 887
BsiHKAI GWGCWC 1 cut(s) 505
BsiSI CCGG 9 cut(s) 45, 57, 129, 322, 363, 415, 724, 888, 978
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 6 cut(s) 11, 93, 96, 190, 309, 723
BsmFI GGGAC 1 cut(s) 611
BsnI GGCC 5 cut(s) 284, 321, 414, 696, 841
Bsp1286I GDGCHC 1 cut(s) 505
Bsp13I TCCGGA 1 cut(s) 723
Bsp143I GATC 4 cut(s) 684, 805, 900, 972
Bsp19I CCATGG 3 cut(s) 90, 144, 809
BspACI CCGC 7 cut(s) 87, 345, 381, 549, 588, 693, 735
BspANI GGCC 5 cut(s) 284, 321, 414, 696, 841
BspCNI CTCAG 1 cut(s) 466
BspEI TCCGGA 1 cut(s) 723
BspFNI CGCG 2 cut(s) 693, 735
BspHI TCATGA 1 cut(s) 1154
BspLI GGNNCC 6 cut(s) 367, 483, 627, 652, 807, 842
BspPI GGATC 2 cut(s) 800, 813
BspQI GCTCTTC 1 cut(s) 1052
BspT107I GGYRCC 2 cut(s) 365, 481
BspTI CTTAAG 2 cut(s) 824, 1088
BsrDI GCAATG 1 cut(s) 627
BsrFI RCCGGY 2 cut(s) 56, 887
BsrI ACTGG 4 cut(s) 21, 72, 214, 223
BssAI RCCGGY 2 cut(s) 56, 887
BssECI CCNNGG 3 cut(s) 90, 144, 809
BssMI GATC 4 cut(s) 684, 805, 900, 972
BssNI GRCGYC 2 cut(s) 366, 482
BssSI CACGAG 1 cut(s) 701
BssT1I CCWWGG 3 cut(s) 90, 144, 809
Bst2BI CACGAG 1 cut(s) 701
Bst2UI CCWGG 1 cut(s) 1082
Bst4CI ACNGT 5 cut(s) 185, 233, 304, 646, 985
Bst6I CTCTTC 1 cut(s) 1052
BstACI GRCGYC 2 cut(s) 366, 482
BstAFI CTTAAG 2 cut(s) 824, 1088
BstC8I GCNNGC 3 cut(s) 6, 698, 1095
BstDEI CTNAG 1 cut(s) 474
BstDSI CCRYGG 3 cut(s) 90, 144, 809
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 3 cut(s) 405, 485, 602
BstFNI CGCG 2 cut(s) 693, 735
BstH2I RGCGCY 2 cut(s) 369, 485
BstHHI GCGC 3 cut(s) 368, 484, 693
BstKTI GATC 4 cut(s) 687, 808, 903, 975
BstMBI GATC 4 cut(s) 684, 805, 900, 972
BstMWI GCNNNNNNNGC 3 cut(s) 281, 389, 697
BstNI CCWGG 1 cut(s) 1082
BstNSI RCATGY 2 cut(s) 78, 1005
BstSCI CCNGG 1 cut(s) 1080
BstUI CGCG 2 cut(s) 693, 735
BstV1I GCAGC 5 cut(s) 259, 308, 370, 892, 982
BstV2I GAAGAC 2 cut(s) 249, 341
BstX2I RGATCY 1 cut(s) 805
BstYI RGATCY 1 cut(s) 805
BsuI GTATCC 1 cut(s) 551
BsuRI GGCC 5 cut(s) 284, 321, 414, 696, 841
BtgI CCRYGG 3 cut(s) 90, 144, 809
BtgZI GCGATG 1 cut(s) 67
BtrI CACGTC 1 cut(s) 255
BtsCI GGATG 3 cut(s) 405, 485, 602
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 3 cut(s) 6, 698, 1095
CciI TCATGA 1 cut(s) 1154
CfoI GCGC 3 cut(s) 368, 484, 693
Cfr10I RCCGGY 2 cut(s) 56, 887
Cfr13I GGNCC 2 cut(s) 625, 840
Csp6I GTAC 6 cut(s) 65, 181, 217, 265, 835, 1085
CspAI ACCGGT 2 cut(s) 56, 887
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviQI GTAC 6 cut(s) 65, 181, 217, 265, 835, 1085
DdeI CTNAG 1 cut(s) 474
DinI GGCGCC 2 cut(s) 367, 483
DpnI GATC 4 cut(s) 686, 807, 902, 974
DpnII GATC 4 cut(s) 684, 805, 900, 972
EaeI YGGCCR 3 cut(s) 319, 412, 694
Eam1104I CTCTTC 1 cut(s) 1052
EarI CTCTTC 1 cut(s) 1052
Ecl136II GAGCTC 1 cut(s) 503
Eco130I CCWWGG 3 cut(s) 90, 144, 809
Eco24I GRGCYC 1 cut(s) 505
Eco47I GGWCC 1 cut(s) 625
Eco53kI GAGCTC 1 cut(s) 503
EcoICRI GAGCTC 1 cut(s) 503
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 840
EcoRI GAATTC 1 cut(s) 729
EcoRII CCWGG 1 cut(s) 1080
EcoT14I CCWWGG 3 cut(s) 90, 144, 809
EcoT22I ATGCAT 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 505
EgeI GGCGCC 2 cut(s) 367, 483
EheI GGCGCC 2 cut(s) 367, 483
ErhI CCWWGG 3 cut(s) 90, 144, 809
FalI AAGNNNNNCTT 2 cut(s) 937, 969
FaqI GGGAC 1 cut(s) 611
FbaI TGATCA 2 cut(s) 900, 972
FblI GTMKAC 1 cut(s) 206
FokI GGATG 3 cut(s) 412, 472, 609
FriOI GRGCYC 1 cut(s) 505
FspBI CTAG 1 cut(s) 780
GlaI GCGC 3 cut(s) 367, 483, 692
HaeII RGCGCY 2 cut(s) 369, 485
HaeIII GGCC 5 cut(s) 284, 321, 414, 696, 841
HapII CCGG 9 cut(s) 45, 57, 129, 322, 363, 415, 724, 888, 978
HhaI GCGC 3 cut(s) 368, 484, 693
Hin1I GRCGYC 2 cut(s) 366, 482
Hin6I GCGC 3 cut(s) 366, 482, 691
HinP1I GCGC 3 cut(s) 366, 482, 691
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 7 cut(s) 123, 149, 307, 406, 441, 817, 865
HpaII CCGG 9 cut(s) 45, 57, 129, 322, 363, 415, 724, 888, 978
HphI GGTGA 3 cut(s) 46, 634, 967
Hpy166II GTNNAC 3 cut(s) 181, 207, 252
Hpy188I TCNGA 7 cut(s) 237, 312, 440, 475, 497, 864, 944
Hpy188III TCNNGA 3 cut(s) 157, 724, 1155
Hpy8I GTNNAC 3 cut(s) 181, 207, 252
HpyAV CCTTC 3 cut(s) 183, 184, 1029
HpyCH4III ACNGT 5 cut(s) 185, 233, 304, 646, 985
HpyCH4IV ACGT 2 cut(s) 140, 254
HpyCH4V TGCA 4 cut(s) 78, 620, 852, 998
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 389, 697
HpyF3I CTNAG 1 cut(s) 474
HpySE526I ACGT 2 cut(s) 140, 254
Hsp92I GRCGYC 2 cut(s) 366, 482
HspAI GCGC 3 cut(s) 366, 482, 691
KasI GGCGCC 2 cut(s) 365, 481
Kpn2I TCCGGA 1 cut(s) 723
Ksp22I TGATCA 2 cut(s) 900, 972
Kzo9I GATC 4 cut(s) 684, 805, 900, 972
LguI GCTCTTC 1 cut(s) 1052
LmnI GCTCC 5 cut(s) 193, 365, 500, 656, 919
Lsp1109I GCAGC 5 cut(s) 259, 308, 370, 892, 982
LweI GCATC 2 cut(s) 87, 940
MaeI CTAG 1 cut(s) 780
MaeII ACGT 2 cut(s) 140, 254
MaeIII GTNAC 3 cut(s) 70, 136, 304
MalI GATC 4 cut(s) 686, 807, 902, 974
MboI GATC 4 cut(s) 684, 805, 900, 972
MboII GAAGA 5 cut(s) 249, 341, 808, 1039, 1143
MfeI CAATTG 2 cut(s) 534, 933
MflI RGATCY 1 cut(s) 805
MhlI GDGCHC 1 cut(s) 505
MluCI AATT 8 cut(s) 326, 534, 553, 562, 729, 858, 933, 1141
Mly113I GGCGCC 2 cut(s) 366, 482
MlyI GAGTC 2 cut(s) 143, 301
MnlI CCTC 8 cut(s) 295, 491, 748, 796, 807, 822, 1032, 1048
Mph1103I ATGCAT 1 cut(s) 80
MroI TCCGGA 1 cut(s) 723
MroXI GAANNNNTTC 2 cut(s) 566, 1046
MseI TTAA 3 cut(s) 825, 1089, 1136
MspA1I CMGCKG 1 cut(s) 383
MspCI CTTAAG 2 cut(s) 824, 1088
MspI CCGG 9 cut(s) 45, 57, 129, 322, 363, 415, 724, 888, 978
MspR9I CCNGG 1 cut(s) 1082
MunI CAATTG 2 cut(s) 534, 933
MvaI CCWGG 1 cut(s) 1082
MvnI CGCG 2 cut(s) 693, 735
MwoI GCNNNNNNNGC 3 cut(s) 281, 389, 697
NarI GGCGCC 2 cut(s) 366, 482
NcoI CCATGG 3 cut(s) 90, 144, 809
NdeII GATC 4 cut(s) 684, 805, 900, 972
NlaIV GGNNCC 6 cut(s) 367, 483, 627, 652, 807, 842
NmuCI GTSAC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 80
NspI RCATGY 2 cut(s) 78, 1005
PagI TCATGA 1 cut(s) 1154
PciI ACATGT 1 cut(s) 1001
PciSI GCTCTTC 1 cut(s) 1052
PdmI GAANNNNTTC 2 cut(s) 566, 1046
PfeI GAWTC 5 cut(s) 123, 406, 441, 817, 865
PinAI ACCGGT 2 cut(s) 56, 887
PleI GAGTC 2 cut(s) 143, 301
PluTI GGCGCC 2 cut(s) 369, 485
PpsI GAGTC 2 cut(s) 143, 301
PscI ACATGT 1 cut(s) 1001
Psp124BI GAGCTC 1 cut(s) 505
Psp6I CCWGG 1 cut(s) 1080
PspGI CCWGG 1 cut(s) 1080
PspN4I GGNNCC 6 cut(s) 367, 483, 627, 652, 807, 842
PspPI GGNCC 2 cut(s) 625, 840
PsuI RGATCY 1 cut(s) 805
RsaI GTAC 6 cut(s) 66, 182, 218, 266, 836, 1086
RsaNI GTAC 6 cut(s) 65, 181, 217, 265, 835, 1085
SacI GAGCTC 1 cut(s) 505
SalI GTCGAC 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 1052
SaqAI TTAA 3 cut(s) 825, 1089, 1136
Sau3AI GATC 4 cut(s) 684, 805, 900, 972
Sau96I GGNCC 2 cut(s) 625, 840
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 2 cut(s) 143, 301
ScrFI CCNGG 1 cut(s) 1082
SduI GDGCHC 1 cut(s) 505
SfaNI GCATC 2 cut(s) 87, 940
SfoI GGCGCC 2 cut(s) 367, 483
SinI GGWCC 1 cut(s) 625
SmlI CTYRAG 3 cut(s) 824, 1052, 1088
SmoI CTYRAG 3 cut(s) 824, 1052, 1088
Sse9I AATT 8 cut(s) 326, 534, 553, 562, 729, 858, 933, 1141
SsiI CCGC 7 cut(s) 87, 345, 381, 549, 588, 693, 735
SspDI GGCGCC 2 cut(s) 365, 481
SspI AATATT 1 cut(s) 660
SspMI CTAG 1 cut(s) 780
SstI GAGCTC 1 cut(s) 505
StyD4I CCNGG 1 cut(s) 1080
StyI CCWWGG 3 cut(s) 90, 144, 809
TaaI ACNGT 5 cut(s) 185, 233, 304, 646, 985
TaiI ACGT 2 cut(s) 143, 257
TaqI TCGA 4 cut(s) 206, 287, 687, 1010
TasI AATT 8 cut(s) 326, 534, 553, 562, 729, 858, 933, 1141
TatI WGTACW 4 cut(s) 64, 216, 264, 834
TauI GCSGC 5 cut(s) 89, 383, 551, 696, 738
TfiI GAWTC 5 cut(s) 123, 406, 441, 817, 865
Tru1I TTAA 3 cut(s) 825, 1089, 1136
Tru9I TTAA 3 cut(s) 825, 1089, 1136
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 5 cut(s) 272, 296, 383, 880, 995
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 4 cut(s) 176, 1117, 1143, 1154
TspRI CASTG 1 cut(s) 28
Vha464I CTTAAG 2 cut(s) 824, 1088
VpaK11BI GGWCC 1 cut(s) 625
XagI CCTNNNNNAGG 1 cut(s) 9
XapI RAATTY 2 cut(s) 729, 1141
XceI RCATGY 2 cut(s) 78, 1005
XmiI GTMKAC 1 cut(s) 206
XmnI GAANNNNTTC 2 cut(s) 566, 1046
XspI CTAG 1 cut(s) 780
ZrmI AGTACT 1 cut(s) 218
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.