RchiOBHm_Chr5g0075761
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001349
Physical Location & Seq
Forward (+)
81516868 .. 81518232
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35047

Sequence Viewer

Length: 1365 bp
ATGTTAGGATTACATTACTGCTTTGGATTCAGACTCTCAGTTTTTCTATATATACACCTACTGGCCCATGTCCAAAACCTCATTGTATCTTCCTCTCATCTCTGCCTATTGTGCTCTCATTACTTTCGTTCTTGTTCGTTTCTAAGTTTTGCAAAAAAAAAAAAACTCGGTTTCAAACCCTTTTCCTCGATCGAGTTCTTTCTTTGGGTTCGAAAAAGCGCAGGGATAATGCCTGCCGTAGGTATTGCCAGTGGCGGCGGCAAGGAGTATGCTGGAAAACTCACCGGTTATGTTCTGGTAACATGCATCATCGCCGCCATGCGAGGGTTGATTTTCGGCTACGACATTGGAATCTCCGGTGGTGTAACGTCCATGGACTCGTTCCTGAAAAAGTTCTTTCCTTCTGTGTACCGTAAGAAGGAGCTGGACAAGTCTACCAACCAGTACTGCCAGTATGACAGTCAGACGTTGACCATGTTCACGTCTTCCTTATACTTGGCTGCTCTCATGGCCTCAGTTGTGGCAGCCACCGTGACTCGGAAGTTTGGCCGGAAATTGTCCATGCTCTTCGGTGGTCTTCTCTTCTGCTCCGGCGCCATCATCAATGGCGCTGCCAAGGCTGTGTGGATGTTGATTCTTGGCCGGATACTCCTCGGTTTCGGTATCGGATTCTCCAATCAGTCTGTGCCACTCTACTTGTCTGAGATGGCGCCATCCAAGTCCAGAGGAGCTCTCAACATTGGTTTCCAGCTTTCTATCACAGTTGGTATCCTTGTCGCCAATTTGTTGAATTACTTCTTTGCCAAGATAGAGGGCGGTTGGGGATGGCGTTTGAGTTTGGGTGGTGCAATGGTCCCTGCCCTTATCATCACCATTGGCTCCCTAATCTTACCAGACACACCAAACTCTATGATCGAGCGCGGCCAGCACGAGGAGGCCAAGACCCAACTCCGGATGATTCGCGGTGTTGATGATGTCAGCGACGAGTTGAATGACCTTGTTATGGCTAGTGATGAGTCCAAGAAGATAGAAGATCCATGGAGGAATCTGCTCCAGAGGAAGTACAGGCCCCAACTTTGCATGGCAATTCTGATTCCATTCTTTCAGCAGCTTACCGGTATCAATGTGATCATGTTCTATGCTCCTGTGTTGTTCAACACAATTGGTTTCGGAAGTGATGCTTCTCTCATATCAGCTGTGATCACCGGACTTGTTAATGTTGCTGCAACAATCGTTTCGATGTATGGTGTTGATAAGTGGGGAAGAAGGAAACTCTTCCTTGAGGGAGGAACTCAAATGTTGATATGCCAAATAGTTGTGGCGGCTTTGCATTGGTGCAAAATTTGGATTGTTGTAGGAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

454

Amino Acids

49.97

Weight (kDa)

9.44

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 102 - 443 2.7e-98 Sugar (and other) transporter
MFS_1 PF07690 152 - 451 9.3e-27 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 593, 709
AccI GTMKAC 1 cut(s) 434
AccII CGCG 2 cut(s) 921, 963
AccIII TCCGGA 1 cut(s) 951
AciI CCGC 7 cut(s) 255, 258, 315, 816, 921, 963, 1322
AclWI GGATC 1 cut(s) 1028
AcoI YGGCCR 3 cut(s) 547, 640, 922
AcsI RAATTY 1 cut(s) 1341
AcyI GRCGYC 2 cut(s) 594, 710
AfaI GTAC 3 cut(s) 410, 446, 1064
AfiI CCNNNNNNNGG 7 cut(s) 239, 324, 418, 537, 931, 951, 1003
AgeI ACCGGT 2 cut(s) 284, 1115
AgsI TTSAA 4 cut(s) 175, 790, 991, 1156
AjiI CACGTC 1 cut(s) 483
AluBI AGCT 5 cut(s) 424, 731, 751, 1111, 1196
AluI AGCT 5 cut(s) 424, 731, 751, 1111, 1196
Alw21I GWGCWC 2 cut(s) 116, 733
AlwI GGATC 1 cut(s) 1028
Aor13HI TCCGGA 1 cut(s) 951
AoxI GGCC 7 cut(s) 63, 510, 547, 640, 922, 936, 1067
ApeKI GCWGC 5 cut(s) 500, 524, 611, 1108, 1223
ApoI RAATTY 1 cut(s) 1341
AsiGI ACCGGT 2 cut(s) 284, 1115
Asp700I GAANNNNTTC 3 cut(s) 392, 794, 1274
AspLEI GCGC 5 cut(s) 221, 596, 611, 712, 921
AspS9I GGNCC 3 cut(s) 64, 853, 1068
AsuHPI GGTGA 3 cut(s) 274, 862, 1195
AsuII TTCGAA 1 cut(s) 211
AvaII GGWCC 1 cut(s) 853
BanI GGYRCC 2 cut(s) 593, 709
BanII GRGCYC 1 cut(s) 733
BauI CACGAG 1 cut(s) 929
BbsI GAAGAC 2 cut(s) 477, 569
Bbv12I GWGCWC 2 cut(s) 116, 733
BbvI GCAGC 5 cut(s) 487, 536, 598, 1120, 1210
BccI CCATC 4 cut(s) 605, 700, 721, 819
BceAI ACGGC 1 cut(s) 221
BciVI GTATCC 2 cut(s) 639, 779
BclI TGATCA 2 cut(s) 1128, 1200
BfaI CTAG 1 cut(s) 1008
BfoI RGCGCY 3 cut(s) 597, 612, 713
BfuI GTATCC 2 cut(s) 639, 779
BmcAI AGTACT 1 cut(s) 446
Bme18I GGWCC 1 cut(s) 853
BmgBI CACGTC 1 cut(s) 483
BmgT120I GGNCC 3 cut(s) 64, 853, 1068
BmiI GGNNCC 5 cut(s) 595, 711, 855, 880, 1070
BmsI GCATC 2 cut(s) 315, 1168
BpiI GAAGAC 2 cut(s) 477, 569
BplI GAGNNNNNCTC 2 cut(s) 717, 749
BpmI CTGGAG 1 cut(s) 1037
Bpu14I TTCGAA 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 1301
BsaHI GRCGYC 2 cut(s) 594, 710
BsaJI CCNNGG 4 cut(s) 372, 615, 652, 1037
BsaWI WCCGGW 5 cut(s) 284, 356, 951, 1115, 1205
Bsc4I CCNNNNNNNGG 7 cut(s) 239, 324, 418, 537, 931, 951, 1003
Bse118I RCCGGY 2 cut(s) 284, 1115
Bse1I ACTGG 4 cut(s) 66, 249, 442, 451
Bse3DI GCAATG 1 cut(s) 855
BseAI TCCGGA 1 cut(s) 951
BseDI CCNNGG 4 cut(s) 372, 615, 652, 1037
BseGI GGATG 4 cut(s) 633, 713, 830, 960
BseLI CCNNNNNNNGG 7 cut(s) 239, 324, 418, 537, 931, 951, 1003
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 3 cut(s) 51, 528, 693
BseNI ACTGG 4 cut(s) 66, 249, 442, 451
BseRI GAGGAG 3 cut(s) 641, 741, 947
BseXI GCAGC 5 cut(s) 487, 536, 598, 1120, 1210
Bsh1236I CGCG 2 cut(s) 921, 963
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 7 cut(s) 65, 512, 549, 642, 924, 938, 1069
BshNI GGYRCC 2 cut(s) 593, 709
BshTI ACCGGT 2 cut(s) 284, 1115
BsiEI CGRYCG 1 cut(s) 192
BsiHKAI GWGCWC 2 cut(s) 116, 733
BsiSI CCGG 8 cut(s) 285, 357, 550, 591, 643, 952, 1116, 1206
BslFI GGGAC 1 cut(s) 839
BslI CCNNNNNNNGG 7 cut(s) 239, 324, 418, 537, 931, 951, 1003
BsmFI GGGAC 1 cut(s) 839
BsnI GGCC 7 cut(s) 65, 512, 549, 642, 924, 938, 1069
Bsp119I TTCGAA 1 cut(s) 211
Bsp1286I GDGCHC 2 cut(s) 116, 733
Bsp13I TCCGGA 1 cut(s) 951
Bsp143I GATC 5 cut(s) 189, 912, 1033, 1128, 1200
Bsp19I CCATGG 2 cut(s) 372, 1037
BspACI CCGC 7 cut(s) 255, 258, 315, 816, 921, 963, 1322
BspANI GGCC 7 cut(s) 65, 512, 549, 642, 924, 938, 1069
BspCNI CTCAG 3 cut(s) 50, 527, 694
BspEI TCCGGA 1 cut(s) 951
BspFNI CGCG 2 cut(s) 921, 963
BspLI GGNNCC 5 cut(s) 595, 711, 855, 880, 1070
BspPI GGATC 1 cut(s) 1028
BspQI GCTCTTC 1 cut(s) 572
BspT104I TTCGAA 1 cut(s) 211
BspT107I GGYRCC 2 cut(s) 593, 709
BsrDI GCAATG 1 cut(s) 855
BsrFI RCCGGY 2 cut(s) 284, 1115
BsrI ACTGG 4 cut(s) 66, 249, 442, 451
BssAI RCCGGY 2 cut(s) 284, 1115
BssECI CCNNGG 4 cut(s) 372, 615, 652, 1037
BssMI GATC 5 cut(s) 189, 912, 1033, 1128, 1200
BssNI GRCGYC 2 cut(s) 594, 710
BssSI CACGAG 1 cut(s) 929
BssT1I CCWWGG 3 cut(s) 372, 615, 1037
Bst2BI CACGAG 1 cut(s) 929
Bst4CI ACNGT 4 cut(s) 413, 461, 532, 763
Bst6I CTCTTC 3 cut(s) 572, 587, 1280
BstACI GRCGYC 2 cut(s) 594, 710
BstBI TTCGAA 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 234, 926
BstDEI CTNAG 4 cut(s) 37, 143, 514, 702
BstDSI CCRYGG 2 cut(s) 372, 1037
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 4 cut(s) 633, 713, 830, 960
BstFNI CGCG 2 cut(s) 921, 963
BstH2I RGCGCY 3 cut(s) 597, 612, 713
BstHHI GCGC 5 cut(s) 221, 596, 611, 712, 921
BstKTI GATC 5 cut(s) 192, 915, 1036, 1131, 1203
BstMBI GATC 5 cut(s) 189, 912, 1033, 1128, 1200
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 4 cut(s) 111, 509, 617, 925
BstNSI RCATGY 1 cut(s) 306
BstUI CGCG 2 cut(s) 921, 963
BstV1I GCAGC 5 cut(s) 487, 536, 598, 1120, 1210
BstV2I GAAGAC 2 cut(s) 477, 569
BstX2I RGATCY 1 cut(s) 1033
BstYI RGATCY 1 cut(s) 1033
BsuI GTATCC 2 cut(s) 639, 779
BsuRI GGCC 7 cut(s) 65, 512, 549, 642, 924, 938, 1069
BtgI CCRYGG 2 cut(s) 372, 1037
BtgZI GCGATG 1 cut(s) 295
BtrI CACGTC 1 cut(s) 483
BtsCI GGATG 4 cut(s) 633, 713, 830, 960
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 234, 926
CfoI GCGC 5 cut(s) 221, 596, 611, 712, 921
Cfr10I RCCGGY 2 cut(s) 284, 1115
Cfr13I GGNCC 3 cut(s) 64, 853, 1068
Csp6I GTAC 3 cut(s) 409, 445, 1063
CspAI ACCGGT 2 cut(s) 284, 1115
CspCI CAANNNNNGTGG 2 cut(s) 678, 713
CviQI GTAC 3 cut(s) 409, 445, 1063
DdeI CTNAG 4 cut(s) 37, 143, 514, 702
DinI GGCGCC 2 cut(s) 595, 711
DpnI GATC 5 cut(s) 191, 914, 1035, 1130, 1202
DpnII GATC 5 cut(s) 189, 912, 1033, 1128, 1200
EaeI YGGCCR 3 cut(s) 547, 640, 922
Eam1104I CTCTTC 3 cut(s) 572, 587, 1280
EarI CTCTTC 3 cut(s) 572, 587, 1280
Ecl136II GAGCTC 1 cut(s) 731
Eco130I CCWWGG 3 cut(s) 372, 615, 1037
Eco24I GRGCYC 1 cut(s) 733
Eco47I GGWCC 1 cut(s) 853
Eco53kI GAGCTC 1 cut(s) 731
EcoICRI GAGCTC 1 cut(s) 731
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 1068
EcoT14I CCWWGG 3 cut(s) 372, 615, 1037
EcoT22I ATGCAT 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 733
EgeI GGCGCC 2 cut(s) 595, 711
EheI GGCGCC 2 cut(s) 595, 711
ErhI CCWWGG 3 cut(s) 372, 615, 1037
FalI AAGNNNNNCTT 2 cut(s) 1165, 1197
FaqI GGGAC 1 cut(s) 839
FbaI TGATCA 2 cut(s) 1128, 1200
FblI GTMKAC 1 cut(s) 434
FokI GGATG 4 cut(s) 640, 700, 837, 967
FriOI GRGCYC 1 cut(s) 733
FspBI CTAG 1 cut(s) 1008
GlaI GCGC 5 cut(s) 220, 595, 610, 711, 920
GsuI CTGGAG 1 cut(s) 1037
HaeII RGCGCY 3 cut(s) 597, 612, 713
HaeIII GGCC 7 cut(s) 65, 512, 549, 642, 924, 938, 1069
HapII CCGG 8 cut(s) 285, 357, 550, 591, 643, 952, 1116, 1206
HhaI GCGC 5 cut(s) 221, 596, 611, 712, 921
Hin1I GRCGYC 2 cut(s) 594, 710
Hin6I GCGC 5 cut(s) 219, 594, 609, 710, 919
HinP1I GCGC 5 cut(s) 219, 594, 609, 710, 919
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HpaII CCGG 8 cut(s) 285, 357, 550, 591, 643, 952, 1116, 1206
HphI GGTGA 3 cut(s) 274, 862, 1195
Hpy166II GTNNAC 4 cut(s) 409, 435, 471, 480
Hpy188I TCNGA 7 cut(s) 32, 465, 540, 668, 703, 1092, 1172
Hpy188III TCNNGA 4 cut(s) 385, 723, 952, 1054
Hpy8I GTNNAC 4 cut(s) 409, 435, 471, 480
Hpy99I CGWCG 1 cut(s) 986
HpyAV CCTTC 3 cut(s) 411, 412, 1260
HpyCH4III ACNGT 4 cut(s) 413, 461, 532, 763
HpyCH4IV ACGT 3 cut(s) 368, 467, 482
HpyCH4V TGCA 7 cut(s) 152, 306, 848, 1080, 1226, 1330, 1338
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 509, 617, 925
HpyF3I CTNAG 4 cut(s) 37, 143, 514, 702
HpySE526I ACGT 3 cut(s) 368, 467, 482
Hsp92I GRCGYC 2 cut(s) 594, 710
HspAI GCGC 5 cut(s) 219, 594, 609, 710, 919
KasI GGCGCC 2 cut(s) 593, 709
Kpn2I TCCGGA 1 cut(s) 951
Ksp22I TGATCA 2 cut(s) 1128, 1200
Kzo9I GATC 5 cut(s) 189, 912, 1033, 1128, 1200
LguI GCTCTTC 1 cut(s) 572
LmnI GCTCC 6 cut(s) 421, 593, 728, 884, 1056, 1147
Lsp1109I GCAGC 5 cut(s) 487, 536, 598, 1120, 1210
LweI GCATC 2 cut(s) 315, 1168
MaeI CTAG 1 cut(s) 1008
MaeII ACGT 3 cut(s) 368, 467, 482
MaeIII GTNAC 3 cut(s) 298, 364, 532
MalI GATC 5 cut(s) 191, 914, 1035, 1130, 1202
MboI GATC 5 cut(s) 189, 912, 1033, 1128, 1200
MboII GAAGA 9 cut(s) 81, 477, 559, 569, 574, 1036, 1043, 1267, 1275
MfeI CAATTG 1 cut(s) 1161
MflI RGATCY 1 cut(s) 1033
MhlI GDGCHC 2 cut(s) 116, 733
MluCI AATT 6 cut(s) 554, 781, 790, 1086, 1161, 1341
Mly113I GGCGCC 2 cut(s) 594, 710
MlyI GAGTC 4 cut(s) 27, 371, 529, 1025
Mph1103I ATGCAT 1 cut(s) 308
MroI TCCGGA 1 cut(s) 951
MroXI GAANNNNTTC 3 cut(s) 392, 794, 1274
MseI TTAA 1 cut(s) 1215
MspA1I CMGCKG 1 cut(s) 1196
MspI CCGG 8 cut(s) 285, 357, 550, 591, 643, 952, 1116, 1206
MunI CAATTG 1 cut(s) 1161
MvnI CGCG 2 cut(s) 921, 963
MwoI GCNNNNNNNGC 4 cut(s) 111, 509, 617, 925
NarI GGCGCC 2 cut(s) 594, 710
NcoI CCATGG 2 cut(s) 372, 1037
NdeII GATC 5 cut(s) 189, 912, 1033, 1128, 1200
NlaIV GGNNCC 5 cut(s) 595, 711, 855, 880, 1070
NmuCI GTSAC 1 cut(s) 532
NsiI ATGCAT 1 cut(s) 308
NspI RCATGY 1 cut(s) 306
NspV TTCGAA 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 572
PdmI GAANNNNTTC 3 cut(s) 392, 794, 1274
PfeI GAWTC 7 cut(s) 27, 351, 634, 669, 958, 1045, 1093
PinAI ACCGGT 2 cut(s) 284, 1115
Ple19I CGATCG 1 cut(s) 192
PleI GAGTC 4 cut(s) 27, 371, 529, 1024
PluTI GGCGCC 2 cut(s) 597, 713
PpsI GAGTC 4 cut(s) 27, 371, 529, 1024
Psp124BI GAGCTC 1 cut(s) 733
PspN4I GGNNCC 5 cut(s) 595, 711, 855, 880, 1070
PspPI GGNCC 3 cut(s) 64, 853, 1068
PsuI RGATCY 1 cut(s) 1033
PvuI CGATCG 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 1196
RsaI GTAC 3 cut(s) 410, 446, 1064
RsaNI GTAC 3 cut(s) 409, 445, 1063
SacI GAGCTC 1 cut(s) 733
SapI GCTCTTC 1 cut(s) 572
SaqAI TTAA 1 cut(s) 1215
Sau3AI GATC 5 cut(s) 189, 912, 1033, 1128, 1200
Sau96I GGNCC 3 cut(s) 64, 853, 1068
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 4 cut(s) 27, 371, 529, 1025
SduI GDGCHC 2 cut(s) 116, 733
SfaNI GCATC 2 cut(s) 315, 1168
SfoI GGCGCC 2 cut(s) 595, 711
SfuI TTCGAA 1 cut(s) 211
SinI GGWCC 1 cut(s) 853
SmlI CTYRAG 1 cut(s) 1280
SmoI CTYRAG 1 cut(s) 1280
Sse9I AATT 6 cut(s) 554, 781, 790, 1086, 1161, 1341
SsiI CCGC 7 cut(s) 255, 258, 315, 816, 921, 963, 1322
SspDI GGCGCC 2 cut(s) 593, 709
SspMI CTAG 1 cut(s) 1008
SstI GAGCTC 1 cut(s) 733
StyI CCWWGG 3 cut(s) 372, 615, 1037
TaaI ACNGT 4 cut(s) 413, 461, 532, 763
TaiI ACGT 3 cut(s) 371, 470, 485
TaqI TCGA 5 cut(s) 188, 192, 211, 915, 1238
TasI AATT 6 cut(s) 554, 781, 790, 1086, 1161, 1341
TatI WGTACW 2 cut(s) 444, 1062
TauI GCSGC 5 cut(s) 258, 261, 317, 924, 1325
TfiI GAWTC 7 cut(s) 27, 351, 634, 669, 958, 1045, 1093
Tru1I TTAA 1 cut(s) 1215
Tru9I TTAA 1 cut(s) 1215
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 5 cut(s) 500, 524, 611, 1108, 1223
Tsp45I GTSAC 1 cut(s) 532
TspRI CASTG 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 853
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 1 cut(s) 1341
XceI RCATGY 1 cut(s) 306
XmiI GTMKAC 1 cut(s) 434
XmnI GAANNNNTTC 3 cut(s) 392, 794, 1274
XspI CTAG 1 cut(s) 1008
ZrmI AGTACT 1 cut(s) 446
Zsp2I ATGCAT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.