Rorug04G0446000
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
60182825 .. 60183781
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0446000.1

Sequence Viewer

Length: 873 bp
ATGGAGCCGAAAATTCTACTGCGTGAACTGGATGAAGAAGCACGCATACTGCCTGCTAAGAAGTTGGTGAACAAAGTCGCAGTTATAACTGGGGGTGCAAGAGGGATTGGAGCTGCTGCGGCCAAGCTATTTGCCCGAAACGGTGCCCATGTTGTGATTGCCGACATACTTGACGACTTGGGAGCTGCACTGGCCGACTCTATTGGGGGACGGTACATACACTGTGATGTGTCCAAGGAATCTGATGTTGAATCAGCTATTGAGCTTGCACTCGGAAGGACAGGCCAGCTTGACATCATGTTCAACAATGCTGGTATTTCTGGTCCGTCGGGGAGTATAACCAGCCTTGACATGGGAAAGGTGCAGCAACTACTCTCAGTCAACACTTTCGGCTGTTTACATGGGATTAAGTATGCAGCAGCAGCTATGATCAAAACCAGAACAAGCGGGAGCATCATCTGCACATCGAGCACTGCAGCTATCATGGGCGGCCTTGGTGGACATGCCTACACATTGTCAAAGGAGTCCATCAATGGACTGGTGAGAAGCGCTGCATGTGAGTTGGGAGTCCATGGCATTCGTGTGAACAGTATTTCTCCACACGGGGTTCCTTCAGAGATGCTGGTCGCTGCCTACAGAGAGATTCTTGGGAAAGAGGATATGCAGGCCGAAGATGTAAGCAAGATTGTGGGAGAAAGGGCGAGCTTGTTGCATGGCAGATGTGGAACTGTGGAAGATGTCGCAGAAGCTGCATTATTCCTTGCCAGTGAAGACTCAGGGTTCATAACAGCCCATAATCTTGTCCTTGATGGGGGTTATACTTCTGCTGTCAGTACCATGAGCTTCATTTATCAATTTACCAATAGACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

290

Amino Acids

30.28

Weight (kDa)

5.76

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 25 - 209 9.6e-44 short chain dehydrogenase
KR PF08659 28 - 184 9.8e-07 KR domain
adh_short_C2 PF13561 32 - 274 2.4e-55 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 143
AciI CCGC 3 cut(s) 119, 447, 489
AcoI YGGCCR 2 cut(s) 120, 192
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 597
AfaI GTAC 2 cut(s) 215, 835
AfeI AGCGCT 1 cut(s) 550
AfiI CCNNNNNNNGG 2 cut(s) 352, 811
AgsI TTSAA 2 cut(s) 251, 304
Alw21I GWGCWC 1 cut(s) 473
AlwNI CAGNNNCTG 1 cut(s) 749
Aor51HI AGCGCT 1 cut(s) 550
AoxI GGCC 5 cut(s) 120, 192, 283, 490, 666
ApoI RAATTY 1 cut(s) 12
AspLEI GCGC 1 cut(s) 551
AspS9I GGNCC 1 cut(s) 323
AsuHPI GGTGA 2 cut(s) 79, 553
AvaII GGWCC 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 143
BarI GAAGNNNNNNTAC 2 cut(s) 30, 62
BbsI GAAGAC 1 cut(s) 777
Bbv12I GWGCWC 1 cut(s) 473
BccI CCATC 2 cut(s) 536, 803
BcgI CGANNNNNNTGC 2 cut(s) 691, 725
BclI TGATCA 1 cut(s) 429
BfmI CTRYAG 2 cut(s) 474, 634
BfoI RGCGCY 1 cut(s) 552
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 3 cut(s) 6, 145, 609
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 2 cut(s) 462, 609
BmuI ACTGGG 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 777
BsaJI CCNNGG 3 cut(s) 234, 493, 571
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 811
Bse1I ACTGG 5 cut(s) 33, 94, 195, 543, 765
BseDI CCNNGG 3 cut(s) 234, 493, 571
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 352, 811
BseMII CTCAG 2 cut(s) 390, 789
BseNI ACTGG 5 cut(s) 33, 94, 195, 543, 765
BseSI GKGCMC 1 cut(s) 148
BsgI GTGCAG 3 cut(s) 171, 383, 445
BshFI GGCC 5 cut(s) 122, 194, 285, 492, 668
BshNI GGYRCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 473
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 352, 811
BsmFI GGGAC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 576
BsnI GGCC 5 cut(s) 122, 194, 285, 492, 668
Bsp1286I GDGCHC 2 cut(s) 148, 473
Bsp143I GATC 1 cut(s) 429
Bsp19I CCATGG 1 cut(s) 571
BspACI CCGC 3 cut(s) 119, 447, 489
BspANI GGCC 5 cut(s) 122, 194, 285, 492, 668
BspCNI CTCAG 2 cut(s) 389, 788
BspLI GGNNCC 3 cut(s) 6, 145, 609
BspMAI CTGCAG 1 cut(s) 478
BspT107I GGYRCC 1 cut(s) 143
BsrI ACTGG 5 cut(s) 33, 94, 195, 543, 765
BssECI CCNNGG 3 cut(s) 234, 493, 571
BssMI GATC 1 cut(s) 429
BssT1I CCWWGG 3 cut(s) 234, 493, 571
Bst4CI ACNGT 5 cut(s) 143, 213, 224, 590, 730
BstAPI GCANNNNNTGC 2 cut(s) 459, 749
BstC8I GCNNGC 6 cut(s) 43, 54, 267, 287, 666, 703
BstDEI CTNAG 3 cut(s) 57, 376, 775
BstDSI CCRYGG 1 cut(s) 571
BstF5I GGATG 1 cut(s) 37
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 1 cut(s) 432
BstMBI GATC 1 cut(s) 429
BstMWI GCNNNNNNNGC 6 cut(s) 119, 191, 422, 459, 468, 749
BstNSI RCATGY 2 cut(s) 506, 558
BstSFI CTRYAG 2 cut(s) 474, 634
BstSLI GKGCMC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 777
BsuRI GGCC 5 cut(s) 122, 194, 285, 492, 668
BtgI CCRYGG 1 cut(s) 571
BtsCI GGATG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 4 cut(s) 188, 220, 471, 772
Cac8I GCNNGC 6 cut(s) 43, 54, 267, 287, 666, 703
CaiI CAGNNNCTG 1 cut(s) 749
CfoI GCGC 1 cut(s) 551
Cfr13I GGNCC 1 cut(s) 323
Csp6I GTAC 2 cut(s) 214, 834
CviQI GTAC 2 cut(s) 214, 834
DdeI CTNAG 3 cut(s) 57, 376, 775
DpnI GATC 1 cut(s) 431
DpnII GATC 1 cut(s) 429
EaeI YGGCCR 2 cut(s) 120, 192
Eco130I CCWWGG 3 cut(s) 234, 493, 571
Eco47I GGWCC 1 cut(s) 323
Eco47III AGCGCT 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 597
EcoT14I CCWWGG 3 cut(s) 234, 493, 571
ErhI CCWWGG 3 cut(s) 234, 493, 571
FaqI GGGAC 1 cut(s) 222
FauI CCCGC 1 cut(s) 440
FbaI TGATCA 1 cut(s) 429
FokI GGATG 1 cut(s) 44
GlaI GCGC 1 cut(s) 550
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 5 cut(s) 122, 194, 285, 492, 668
HhaI GCGC 1 cut(s) 551
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 7 cut(s) 197, 239, 251, 524, 567, 643, 773
HphI GGTGA 2 cut(s) 79, 553
Hpy166II GTNNAC 6 cut(s) 26, 70, 382, 398, 500, 586
Hpy188I TCNGA 3 cut(s) 244, 275, 616
Hpy8I GTNNAC 6 cut(s) 26, 70, 382, 398, 500, 586
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 2 cut(s) 270, 621
HpyCH4III ACNGT 5 cut(s) 143, 213, 224, 590, 730
HpyF10VI GCNNNNNNNGC 6 cut(s) 119, 191, 422, 459, 468, 749
HpyF3I CTNAG 3 cut(s) 57, 376, 775
HspAI GCGC 1 cut(s) 549
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 1 cut(s) 429
LmnI GCTCC 4 cut(s) 4, 110, 182, 450
LweI GCATC 2 cut(s) 462, 609
MalI GATC 1 cut(s) 431
MboI GATC 1 cut(s) 429
MboII GAAGA 4 cut(s) 47, 683, 746, 782
MhlI GDGCHC 2 cut(s) 148, 473
MluCI AATT 2 cut(s) 12, 854
MlyI GAGTC 4 cut(s) 191, 533, 576, 767
MnlI CCTC 2 cut(s) 95, 649
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 2 cut(s) 225, 581
Mva1269I GAATGC 1 cut(s) 576
MwoI GCNNNNNNNGC 6 cut(s) 119, 191, 422, 459, 468, 749
NcoI CCATGG 1 cut(s) 571
NdeII GATC 1 cut(s) 429
NlaIV GGNNCC 3 cut(s) 6, 145, 609
NspI RCATGY 2 cut(s) 506, 558
PctI GAATGC 1 cut(s) 576
PfeI GAWTC 3 cut(s) 239, 251, 643
PleI GAGTC 4 cut(s) 191, 532, 575, 767
PpsI GAGTC 4 cut(s) 191, 532, 575, 767
PsiI TTATAA 1 cut(s) 86
PspN4I GGNNCC 3 cut(s) 6, 145, 609
PspPI GGNCC 1 cut(s) 323
PstI CTGCAG 1 cut(s) 478
PstNI CAGNNNCTG 1 cut(s) 749
RsaI GTAC 2 cut(s) 215, 835
RsaNI GTAC 2 cut(s) 214, 834
RseI CAYNNNNRTG 2 cut(s) 225, 581
SaqAI TTAA 1 cut(s) 408
Sau3AI GATC 1 cut(s) 429
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 4 cut(s) 191, 533, 576, 767
SduI GDGCHC 2 cut(s) 148, 473
SfaNI GCATC 2 cut(s) 462, 609
SfcI CTRYAG 2 cut(s) 474, 634
SinI GGWCC 1 cut(s) 323
SmiMI CAYNNNNRTG 2 cut(s) 225, 581
Sse9I AATT 2 cut(s) 12, 854
SsiI CCGC 3 cut(s) 119, 447, 489
StyI CCWWGG 3 cut(s) 234, 493, 571
TaaI ACNGT 5 cut(s) 143, 213, 224, 590, 730
TaqI TCGA 1 cut(s) 467
TasI AATT 2 cut(s) 12, 854
TauI GCSGC 2 cut(s) 122, 492
TfiI GAWTC 3 cut(s) 239, 251, 643
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 4 cut(s) 195, 227, 478, 772
TspDTI ATGAA 3 cut(s) 48, 772, 835
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 4 cut(s) 195, 227, 478, 772
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 1 cut(s) 12
XceI RCATGY 2 cut(s) 506, 558
XcmI CCANNNNNNNNNTGG 2 cut(s) 349, 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.