Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007622

Physical Location & Seq

Genomic Coordinates Reverse (-)

30295941 .. 30296920

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCGTCCTCCAGGAGCCATTCTTAGTCCTGGCGAGAGTCTTATAGCGACTGTATTCAAGTTTGTTGAGGTTCCCGAGAACAATGAAAAACTAGTGGATCAAAAGAGCAGAGTTAAGTTTAAAATCATGAGCTTGAAGGTGAAGGGACCAATGGAGTATGTACCTGAGCTGTTTGATGAGCAAAAGGAGCAAGTGGCCGTAGAGCAGATACTACGGGTTGTCTTTCTAGATCCAGAGCGTTCTACTCCTGCGATGGAAAAACTGAAGCGTCAGTTAGCTGATGCTGATGCTGCGCTTGAGGCGAGCAAGCAACCTGCAGAAGATGCTGGTCCAAAGATTATCGGAGAAGGACTTGTCATAGATGAATGGAAGGAGAGGAGGGAAAGATATCTTGCTCGGCAGCAAGGTGAAGGCGTGGACTCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

143

Amino Acids

15.96

Weight (kDa)

5.1

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21450 AT4G21450
fragaria_vesca	FvH4_3g03880 FvH4_3g03880 FvH4_3g03880
malus_domestica	MD05G1326200.v1.1 MD10G1304100.v1.1
prunus_persica	Prupe.4G035500_v2.0.a1 Prupe.4G035500_v2.0.a1 Prupe.4G035500_v2.0.a1 Prupe.4G035500_v2.0.a1
pyrus_communis	pycom05g30060 pycom10g25670
rosa_chinensis	RchiOBHm_Chr5g0006131
rosa_laevigata	RLG00000031380
rosa_multiflora	Rmu_co8404829.1_g000001 Rmu_sc0004331.1_g000010
rosa_roxburghii	Rroxscaffold_1G00069870
rosa_rugosa	Rorug04G0419700
rosa_samantha	Rh5AG047500 Rh5BG046200 Rh5CG054900 Rh5DG046000
rosa_wichuraiana	Rw5G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	322
AclWI	GGATC	2 cut(s)	105, 224
AcoI	YGGCCR	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	58, 136
AhlI	ACTAGT	1 cut(s)	91
AjnI	CCWGG	2 cut(s)	10, 28
AluBI	AGCT	3 cut(s)	132, 169, 278
AluI	AGCT	3 cut(s)	132, 169, 278
AlwI	GGATC	2 cut(s)	105, 224
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	2 cut(s)	290, 400
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	146, 329
AsuHPI	GGTGA	2 cut(s)	151, 419
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	2 cut(s)	146, 329
BbvI	GCAGC	2 cut(s)	277, 412
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	2 cut(s)	12, 30
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	2 cut(s)	92, 227
BfmI	CTRYAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	2 cut(s)	291, 401
BlsI	GCNGC	2 cut(s)	292, 402
Bme1390I	CCNGG	2 cut(s)	12, 30
Bme18I	GGWCC	2 cut(s)	146, 329
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	146, 329
BmiI	GGNNCC	3 cut(s)	16, 72, 147
BmrFI	CCNGG	2 cut(s)	12, 30
BmsI	GCATC	3 cut(s)	271, 277, 313
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	12, 30
BseMII	CTCAG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	391
BseXI	GCAGC	2 cut(s)	277, 412
BshFI	GGCC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	97, 229
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	157
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	16, 72, 147
BspMAI	CTGCAG	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	2 cut(s)	105, 224
BssMI	GATC	2 cut(s)	97, 229
Bst2UI	CCWGG	2 cut(s)	12, 30
Bst4CI	ACNGT	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	304, 308
BstDEI	CTNAG	2 cut(s)	23, 165
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	2 cut(s)	100, 232
BstMBI	GATC	2 cut(s)	97, 229
BstMWI	GCNNNNNNNGC	4 cut(s)	187, 290, 299, 323
BstNI	CCWGG	2 cut(s)	12, 30
BstSCI	CCNGG	2 cut(s)	10, 28
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	2 cut(s)	277, 412
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	197
BtgZI	GCGATG	1 cut(s)	266
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	304, 308
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	146, 329
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	2 cut(s)	127, 426
CviJI	RGCY	5 cut(s)	17, 132, 169, 197, 278
CviKI_1	RGCY	5 cut(s)	17, 132, 169, 197, 278
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	2 cut(s)	23, 165
DpnI	GATC	2 cut(s)	99, 231
DpnII	GATC	2 cut(s)	97, 229
DraI	TTTAAA	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	195
Eco32I	GATATC	1 cut(s)	389
Eco47I	GGWCC	2 cut(s)	146, 329
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	10, 28
EcoRV	GATATC	1 cut(s)	389
FaeI	CATG	2 cut(s)	130, 429
FaiI	YATR	5 cut(s)	44, 128, 159, 359, 427
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	2 cut(s)	126, 425
Fnu4HI	GCNGC	2 cut(s)	291, 401
Fsp4HI	GCNGC	2 cut(s)	291, 401
FspBI	CTAG	2 cut(s)	92, 227
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	2 cut(s)	291, 401
HaeIII	GGCC	1 cut(s)	197
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	130, 429
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	2 cut(s)	37, 419
HphI	GGTGA	2 cut(s)	151, 419
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	1 cut(s)	344
Hpy188III	TCNNGA	4 cut(s)	74, 127, 227, 233
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	5 cut(s)	130, 136, 341, 364, 404
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	317, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	187, 290, 299, 323
HpyF3I	CTNAG	2 cut(s)	23, 165
Hsp92II	CATG	2 cut(s)	130, 429
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	2 cut(s)	97, 229
LmnI	GCTCC	2 cut(s)	14, 187
LpnPI	CCDG	8 cut(s)	15, 24, 42, 177, 246, 261, 312, 327
Lsp1109I	GCAGC	2 cut(s)	277, 412
LweI	GCATC	3 cut(s)	271, 277, 313
MaeI	CTAG	2 cut(s)	92, 227
MalI	GATC	2 cut(s)	99, 231
MboI	GATC	2 cut(s)	97, 229
MboII	GAAGA	1 cut(s)	332
MflI	RGATCY	1 cut(s)	229
MlyI	GAGTC	2 cut(s)	46, 413
MnlI	CCTC	5 cut(s)	18, 61, 292, 369, 372
MseI	TTAA	2 cut(s)	114, 120
MspR9I	CCNGG	2 cut(s)	12, 30
MvaI	CCWGG	2 cut(s)	12, 30
MwoI	GCNNNNNNNGC	4 cut(s)	187, 290, 299, 323
NdeII	GATC	2 cut(s)	97, 229
NlaIII	CATG	2 cut(s)	130, 429
NlaIV	GGNNCC	3 cut(s)	16, 72, 147
NmeAIII	GCCGAG	1 cut(s)	376
PagI	TCATGA	1 cut(s)	126
PfoI	TCCNGGA	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	292, 402
PleI	GAGTC	2 cut(s)	45, 413
PpsI	GAGTC	2 cut(s)	45, 413
Psp6I	CCWGG	2 cut(s)	10, 28
PspGI	CCWGG	2 cut(s)	10, 28
PspN4I	GGNNCC	3 cut(s)	16, 72, 147
PspPI	GGNCC	2 cut(s)	146, 329
PstI	CTGCAG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	114, 120
SatI	GCNGC	2 cut(s)	291, 401
Sau3AI	GATC	2 cut(s)	97, 229
Sau96I	GGNCC	2 cut(s)	146, 329
SchI	GAGTC	2 cut(s)	46, 413
ScrFI	CCNGG	2 cut(s)	12, 30
SetI	ASST	8 cut(s)	72, 134, 141, 166, 171, 280, 316, 409
SfaNI	GCATC	3 cut(s)	271, 277, 313
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	2 cut(s)	146, 329
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SpeI	ACTAGT	1 cut(s)	91
SspMI	CTAG	2 cut(s)	92, 227
StyD4I	CCNGG	2 cut(s)	10, 28
TaaI	ACNGT	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	114, 120
Tru9I	TTAA	2 cut(s)	114, 120
TseI	GCWGC	2 cut(s)	290, 400
TspDTI	ATGAA	2 cut(s)	99, 378
VpaK11BI	GGWCC	2 cut(s)	146, 329
XbaI	TCTAGA	1 cut(s)	226
XspI	CTAG	2 cut(s)	92, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.