Rmu_co8404829.1_g000001

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8404829.1
OG0007622
Physical Location & Seq
Forward (+)
1 .. 1114
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8404829.1_g000001.1.cds

Sequence Viewer

Length: 347 bp
gtgaacctgggaagcaggttaggagtgccattagaattaaaaacacaagcaagtcccatgtagcgttcaagtttcaaacgactgcaccgaaaagttgtttcatgcgtcctcctggtgctattcttagtcctggtgagagtctcatagccacagtgttcaagtttgtggaggttcctgagaacaatgaaaaactagtggatcaaaagagccgagttaaatttaaaataatgagcctgaaggtgaaggggccaatggactatgtacccgagctggtgtgttacatgcatccttcaagtgctatctttagttatggtgttaccttgttaatcatgttcctaagtatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

114

Amino Acids

12.75

Weight (kDa)

9.74

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 206
AcsI RAATTY 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 256
AfaI GTAC 1 cut(s) 263
AgsI TTSAA 4 cut(s) 69, 76, 159, 293
AhlI ACTAGT 1 cut(s) 192
AjnI CCWGG 3 cut(s) 6, 111, 129
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 1 cut(s) 206
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 2 cut(s) 145, 252
AvaI CYCGRG 1 cut(s) 265
BciT130I CCWGG 3 cut(s) 8, 113, 131
BcoDI GTCTC 1 cut(s) 145
BcuI ACTAGT 1 cut(s) 192
BfaI CTAG 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 6
Bme1390I CCNGG 3 cut(s) 8, 113, 131
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 173, 248
BmrFI CCNGG 3 cut(s) 8, 113, 131
BmsI GCATC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 7
BseBI CCWGG 3 cut(s) 8, 113, 131
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 68
BshFI GGCC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 265
BslFI GGGAC 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 39
BsnI GGCC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 265
Bsp143I GATC 1 cut(s) 198
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 173, 248
BspMI ACCTGC 1 cut(s) 6
BspPI GGATC 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 1 cut(s) 198
Bst2UI CCWGG 3 cut(s) 8, 113, 131
Bst4CI ACNGT 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 124, 176, 337
BstF5I GGATG 1 cut(s) 285
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 1 cut(s) 198
BstNI CCWGG 3 cut(s) 8, 113, 131
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 3 cut(s) 6, 111, 129
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 158
BveI ACCTGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 262
CviAII CATG 4 cut(s) 58, 102, 282, 330
CviJI RGCY 5 cut(s) 148, 209, 233, 249, 270
CviKI_1 RGCY 5 cut(s) 148, 209, 233, 249, 270
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 3 cut(s) 124, 176, 337
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
DraI TTTAAA 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 256
Eco88I CYCGRG 1 cut(s) 265
EcoRII CCWGG 3 cut(s) 6, 111, 129
EcoT22I ATGCAT 1 cut(s) 287
FaeI CATG 4 cut(s) 61, 105, 285, 333
FaiI YATR 7 cut(s) 59, 103, 145, 260, 283, 311, 331
FaqI GGGAC 1 cut(s) 39
FatI CATG 4 cut(s) 57, 101, 281, 329
FokI GGATG 1 cut(s) 272
FspBI CTAG 1 cut(s) 193
HaeIII GGCC 1 cut(s) 249
HgaI GACGC 1 cut(s) 94
Hin1II CATG 4 cut(s) 61, 105, 285, 333
HinfI GANTC 1 cut(s) 138
HphI GGTGA 2 cut(s) 145, 252
Hpy166II GTNNAC 1 cut(s) 4
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 4
HpyAV CCTTC 3 cut(s) 231, 237, 299
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 85, 285
HpyF3I CTNAG 3 cut(s) 124, 176, 337
Hsp92II CATG 4 cut(s) 61, 105, 285, 333
Kzo9I GATC 1 cut(s) 198
LpnPI CCDG 8 cut(s) 20, 98, 116, 125, 143, 188, 247, 256
LweI GCATC 1 cut(s) 294
MaeI CTAG 1 cut(s) 193
MaeIII GTNAC 2 cut(s) 277, 315
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MluCI AATT 2 cut(s) 35, 217
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 2 cut(s) 119, 162
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 4 cut(s) 38, 215, 221, 325
MspR9I CCNGG 3 cut(s) 8, 113, 131
MvaI CCWGG 3 cut(s) 8, 113, 131
NdeII GATC 1 cut(s) 198
NlaIII CATG 4 cut(s) 61, 105, 285, 333
NlaIV GGNNCC 2 cut(s) 173, 248
NmeAIII GCCGAG 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 1 cut(s) 285
PcsI WCGNNNNNNNCGW 1 cut(s) 85
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp6I CCWGG 3 cut(s) 6, 111, 129
PspGI CCWGG 3 cut(s) 6, 111, 129
PspN4I GGNNCC 2 cut(s) 173, 248
PspPI GGNCC 1 cut(s) 247
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SaqAI TTAA 4 cut(s) 38, 215, 221, 325
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 3 cut(s) 8, 113, 131
SetI ASST 6 cut(s) 9, 20, 173, 242, 272, 322
SfaNI GCATC 1 cut(s) 294
SpeI ACTAGT 1 cut(s) 192
Sse9I AATT 2 cut(s) 35, 217
SspMI CTAG 1 cut(s) 193
StyD4I CCNGG 3 cut(s) 6, 111, 129
TaaI ACNGT 1 cut(s) 153
TasI AATT 2 cut(s) 35, 217
Tru1I TTAA 4 cut(s) 38, 215, 221, 325
Tru9I TTAA 4 cut(s) 38, 215, 221, 325
TscAI CASTG 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 90, 200
TspRI CASTG 1 cut(s) 158
XapI RAATTY 1 cut(s) 217
XceI RCATGY 1 cut(s) 285
XspI CTAG 1 cut(s) 193
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.