Rroxscaffold_1G00069870

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0007622
Physical Location & Seq
Reverse (-)
90726127 .. 90729017
2891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069870.1

Sequence Viewer

Length: 795 bp
ATGGCCATAGCTGACCACAAGTCTTCGTCGTCTTCGTCTGACGGAAAAGTCTGGGGCTTCTTCAAACGGCCGTTTCGACCGTCCGGTAACACCGCCGCCACTACGACGCCCTCTTCTTCTATGTCGCACCACCAGCCGAACGGCGACGGATCGATTCCTCACGCCTCGACTTCCGTGTCGTCGGTAGCCAGGTCGCTGCTTCCGACTCGTCGTAGACTGAAGCTCGATCCCTGCAATAAGCTATATTTTCCTTGTGAACCTGGGAAGCAGGTTAGGAGTGCCATTAGAATTAAAAACACAAGCAAGTCCCATGTAGCGTTCAAGGTACGATCAGAGTTTCAAACGACTGCACCGAAAAGTTGTTTCATGCGTCCTCCTGGTGCTATTCTTAGTCCTGGTGAGAGTCTCATAGCCACAGTGTTCAAGTTTGTTGAGGTTCCTGAGAACAATGAAAAACTAGTGGATCAAAAGAGCCGAGTTAAATTTAAAATAATGAGCCTGAAGGTGAAGGGGCCAATGGACTATGTACCTGAGCTGTTTGATGAGCAGAAGGAACAAGTAGCAATAGAGCAGATACTACGGGTTGTCTTTCTGGATCCAGAGCGCTCTACCCCTGCTATGGAAAAATTGAAGCGCCAGTTGGCTGATGCTGATGCTGCGCTTGAAGCACGCAAGAAACCTCCAGAAGATGCTGGCCCAAAGATCATAGGAGAAGGTCTTGTCATAGATGAATGGAAGGAGCGGAGGGAAAGATATCTTGCTCGGCAGCAGGTTGAAGGGTTGGACTCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

264

Amino Acids

29.39

Weight (kDa)

9.59

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Motile_Sperm PF00635 73 - 186 8.1e-20 MSP (Major sperm protein) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 47, 175
Acc36I ACCTGC 2 cut(s) 259, 760
AccBSI CCGCTC 1 cut(s) 742
AccI GTMKAC 1 cut(s) 214
AciI CCGC 3 cut(s) 93, 96, 742
AclWI GGATC 5 cut(s) 157, 221, 471, 590, 603
AcoI YGGCCR 2 cut(s) 3, 68
AcsI RAATTY 1 cut(s) 482
AcuI CTGAAG 2 cut(s) 239, 521
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 2 cut(s) 327, 528
AfeI AGCGCT 1 cut(s) 605
AfiI CCNNNNNNNGG 1 cut(s) 619
AgsI TTSAA 7 cut(s) 64, 322, 341, 424, 631, 665, 776
AhdI GACNNNNNGTC 1 cut(s) 19
AhlI ACTAGT 1 cut(s) 457
AjnI CCWGG 4 cut(s) 188, 259, 376, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 623, 655
AluBI AGCT 4 cut(s) 11, 223, 241, 535
AluI AGCT 4 cut(s) 11, 223, 241, 535
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 5 cut(s) 157, 221, 471, 590, 603
Aor51HI AGCGCT 1 cut(s) 605
AoxI GGCC 4 cut(s) 3, 68, 512, 694
ApeKI GCWGC 3 cut(s) 196, 656, 766
ApoI RAATTY 1 cut(s) 482
AspLEI GCGC 3 cut(s) 606, 636, 661
AspS9I GGNCC 2 cut(s) 512, 695
AsuHPI GGTGA 2 cut(s) 410, 517
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 595
BbsI GAAGAC 2 cut(s) 15, 24
BbvI GCAGC 3 cut(s) 183, 643, 778
BceAI ACGGC 3 cut(s) 55, 83, 157
BciT130I CCWGG 4 cut(s) 190, 261, 378, 396
BcoDI GTCTC 1 cut(s) 410
BcuI ACTAGT 1 cut(s) 457
BfaI CTAG 1 cut(s) 458
BfoI RGCGCY 2 cut(s) 607, 637
BfuAI ACCTGC 2 cut(s) 259, 760
BisI GCNGC 4 cut(s) 96, 197, 657, 767
BlsI GCNGC 4 cut(s) 97, 198, 658, 768
Bme1390I CCNGG 4 cut(s) 190, 261, 378, 396
BmeRI GACNNNNNGTC 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 512, 695
BmiI GGNNCC 3 cut(s) 438, 513, 597
BmrFI CCNGG 4 cut(s) 190, 261, 378, 396
BmsI GCATC 3 cut(s) 637, 643, 679
BpiI GAAGAC 2 cut(s) 15, 24
BpmI CTGGAG 1 cut(s) 666
Bpu10I CCTNAGC 1 cut(s) 531
Bsa29I ATCGAT 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 260
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 619
Bse1I ACTGG 1 cut(s) 637
BseBI CCWGG 4 cut(s) 190, 261, 378, 396
BseCI ATCGAT 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 619
BseMII CTCAG 2 cut(s) 432, 522
BseNI ACTGG 1 cut(s) 637
BseX3I CGGCCG 1 cut(s) 68
BseXI GCAGC 3 cut(s) 183, 643, 778
BsgI GTGCAG 1 cut(s) 333
Bsh1285I CGRYCG 2 cut(s) 71, 80
BshFI GGCC 4 cut(s) 5, 70, 514, 696
BshVI ATCGAT 1 cut(s) 152
BsiEI CGRYCG 2 cut(s) 71, 80
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 619
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 4 cut(s) 5, 70, 514, 696
Bsp143I GATC 6 cut(s) 149, 226, 329, 463, 595, 702
BspACI CCGC 3 cut(s) 93, 96, 742
BspANI GGCC 4 cut(s) 5, 70, 514, 696
BspCNI CTCAG 2 cut(s) 433, 523
BspDI ATCGAT 1 cut(s) 152
BspLI GGNNCC 3 cut(s) 438, 513, 597
BspMI ACCTGC 2 cut(s) 259, 760
BspPI GGATC 5 cut(s) 157, 221, 471, 590, 603
BsrBI CCGCTC 1 cut(s) 742
BsrI ACTGG 1 cut(s) 637
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 6 cut(s) 149, 226, 329, 463, 595, 702
BssNI GRCGYC 1 cut(s) 107
Bst2UI CCWGG 4 cut(s) 190, 261, 378, 396
Bst4CI ACNGT 2 cut(s) 81, 418
Bst6I CTCTTC 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 670, 694
BstDEI CTNAG 3 cut(s) 389, 441, 531
BstH2I RGCGCY 2 cut(s) 607, 637
BstHHI GCGC 3 cut(s) 606, 636, 661
BstKTI GATC 6 cut(s) 152, 229, 332, 466, 598, 705
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 6 cut(s) 149, 226, 329, 463, 595, 702
BstMCI CGRYCG 2 cut(s) 71, 80
BstMWI GCNNNNNNNGC 3 cut(s) 133, 656, 665
BstNI CCWGG 4 cut(s) 190, 261, 378, 396
BstSCI CCNGG 4 cut(s) 188, 259, 376, 394
BstV1I GCAGC 3 cut(s) 183, 643, 778
BstV2I GAAGAC 2 cut(s) 15, 24
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BstZI CGGCCG 1 cut(s) 68
Bsu15I ATCGAT 1 cut(s) 152
BsuRI GGCC 4 cut(s) 5, 70, 514, 696
BsuTUI ATCGAT 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 423
BveI ACCTGC 2 cut(s) 259, 760
Cac8I GCNNGC 2 cut(s) 670, 694
CfoI GCGC 3 cut(s) 606, 636, 661
Cfr13I GGNCC 2 cut(s) 512, 695
ClaI ATCGAT 1 cut(s) 152
CseI GACGC 2 cut(s) 115, 359
Csp6I GTAC 2 cut(s) 326, 527
CviAII CATG 3 cut(s) 311, 367, 792
CviQI GTAC 2 cut(s) 326, 527
DdeI CTNAG 3 cut(s) 389, 441, 531
DpnI GATC 6 cut(s) 151, 228, 331, 465, 597, 704
DpnII GATC 6 cut(s) 149, 226, 329, 463, 595, 702
DraI TTTAAA 1 cut(s) 487
DrdI GACNNNNNNGTC 2 cut(s) 47, 175
DriI GACNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 2 cut(s) 47, 175
EaeI YGGCCR 2 cut(s) 3, 68
EagI CGGCCG 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 118
Eam1105I GACNNNNNGTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 118
EclXI CGGCCG 1 cut(s) 68
Eco32I GATATC 1 cut(s) 755
Eco47III AGCGCT 1 cut(s) 605
Eco52I CGGCCG 1 cut(s) 68
Eco57I CTGAAG 2 cut(s) 239, 521
EcoRII CCWGG 4 cut(s) 188, 259, 376, 394
EcoRV GATATC 1 cut(s) 755
FaeI CATG 3 cut(s) 314, 370, 795
FaqI GGGAC 1 cut(s) 292
FatI CATG 3 cut(s) 310, 366, 791
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 4 cut(s) 96, 197, 657, 767
Fsp4HI GCNGC 4 cut(s) 96, 197, 657, 767
FspBI CTAG 1 cut(s) 458
GlaI GCGC 3 cut(s) 605, 635, 660
GluI GCNGC 4 cut(s) 96, 197, 657, 767
GsuI CTGGAG 1 cut(s) 666
HaeII RGCGCY 2 cut(s) 607, 637
HaeIII GGCC 4 cut(s) 5, 70, 514, 696
HapII CCGG 1 cut(s) 84
HgaI GACGC 2 cut(s) 115, 359
HhaI GCGC 3 cut(s) 606, 636, 661
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 3 cut(s) 314, 370, 795
Hin6I GCGC 3 cut(s) 604, 634, 659
HinP1I GCGC 3 cut(s) 604, 634, 659
HinfI GANTC 4 cut(s) 154, 205, 403, 785
HpaII CCGG 1 cut(s) 84
HphI GGTGA 2 cut(s) 410, 517
Hpy166II GTNNAC 2 cut(s) 215, 257
Hpy188I TCNGA 3 cut(s) 40, 204, 334
Hpy188III TCNNGA 4 cut(s) 440, 593, 599, 683
Hpy8I GTNNAC 2 cut(s) 215, 257
Hpy99I CGWCG 5 cut(s) 31, 109, 149, 184, 213
HpyAV CCTTC 6 cut(s) 496, 502, 544, 707, 730, 770
HpyCH4III ACNGT 2 cut(s) 81, 418
HpyCH4V TGCA 3 cut(s) 234, 350, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 656, 665
HpyF3I CTNAG 3 cut(s) 389, 441, 531
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 3 cut(s) 314, 370, 795
HspAI GCGC 3 cut(s) 604, 634, 659
Kzo9I GATC 6 cut(s) 149, 226, 329, 463, 595, 702
LmnI GCTCC 1 cut(s) 739
Lsp1109I GCAGC 3 cut(s) 183, 643, 778
LweI GCATC 3 cut(s) 637, 643, 679
MaeI CTAG 1 cut(s) 458
MaeIII GTNAC 1 cut(s) 86
MalI GATC 6 cut(s) 151, 228, 331, 465, 597, 704
MbiI CCGCTC 1 cut(s) 742
MboI GATC 6 cut(s) 149, 226, 329, 463, 595, 702
MboII GAAGA 6 cut(s) 15, 24, 52, 105, 108, 698
MflI RGATCY 1 cut(s) 595
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 288, 482, 626
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 199, 412, 779
MmeI TCCRAC 2 cut(s) 227, 762
MnlI CCTC 7 cut(s) 121, 168, 175, 384, 427, 690, 738
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 291, 480, 486
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 4 cut(s) 190, 261, 378, 396
MvaI CCWGG 4 cut(s) 190, 261, 378, 396
MwoI GCNNNNNNNGC 3 cut(s) 133, 656, 665
NdeII GATC 6 cut(s) 149, 226, 329, 463, 595, 702
NlaIII CATG 3 cut(s) 314, 370, 795
NlaIV GGNNCC 3 cut(s) 438, 513, 597
NmeAIII GCCGAG 2 cut(s) 500, 742
PcsI WCGNNNNNNNCGW 4 cut(s) 32, 73, 200, 350
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 4 cut(s) 97, 198, 658, 768
PleI GAGTC 3 cut(s) 199, 411, 779
PpsI GAGTC 3 cut(s) 199, 411, 779
Psp6I CCWGG 4 cut(s) 188, 259, 376, 394
PspGI CCWGG 4 cut(s) 188, 259, 376, 394
PspN4I GGNNCC 3 cut(s) 438, 513, 597
PspPI GGNCC 2 cut(s) 512, 695
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 2 cut(s) 327, 528
RsaNI GTAC 2 cut(s) 326, 527
SaqAI TTAA 3 cut(s) 291, 480, 486
SatI GCNGC 4 cut(s) 96, 197, 657, 767
Sau3AI GATC 6 cut(s) 149, 226, 329, 463, 595, 702
Sau96I GGNCC 2 cut(s) 512, 695
SchI GAGTC 3 cut(s) 199, 412, 779
ScrFI CCNGG 4 cut(s) 190, 261, 378, 396
SfaNI GCATC 3 cut(s) 637, 643, 679
SpeI ACTAGT 1 cut(s) 457
Sse9I AATT 3 cut(s) 288, 482, 626
SsiI CCGC 3 cut(s) 93, 96, 742
SspMI CTAG 1 cut(s) 458
StyD4I CCNGG 4 cut(s) 188, 259, 376, 394
TaaI ACNGT 2 cut(s) 81, 418
TaqI TCGA 4 cut(s) 76, 152, 167, 225
TasI AATT 3 cut(s) 288, 482, 626
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 3 cut(s) 291, 480, 486
Tru9I TTAA 3 cut(s) 291, 480, 486
TscAI CASTG 1 cut(s) 423
TseI GCWGC 3 cut(s) 196, 656, 766
TspDTI ATGAA 3 cut(s) 355, 465, 744
TspGWI ACGGA 3 cut(s) 57, 162, 163
TspRI CASTG 1 cut(s) 423
XapI RAATTY 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 214
XspI CTAG 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.